RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 TSHZ2Q9NRE2 1034 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 CEP126Q9P2H0 1117 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 RIC1Q4ADV7 1423 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 TTC41PQ6P2S7 1318 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 AFDNP55196 1824 aaKnown RBP8.53□□□□□ -1.04
SYNE1-229ENST00000490866 PNMA6EA0A0J9YXQ4 647 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 EYA2O00167 538 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 PHF14O94880 888 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 NTSR2O95665 410 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 IFIT2P09913 472 aaKnown RBP8.53□□□□□ -1.04
SYNE1-229ENST00000490866 ALDH1B1P30837 517 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 FOSBP53539 338 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 TBC1D9BQ66K14 1250 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 TMED8Q6PL24 325 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-229ENST00000490866 LDHAL6AQ6ZMR3 332 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 DDX46Q7L014 1031 aaKnown RBP8.53□□□□□ -1.04
SYNE1-229ENST00000490866 RHPN1Q8TCX5 695 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 KAZALD1Q96I82 304 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 ANKRD2Q9GZV1 360 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 C1orf115Q9H7X2 142 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 CHMP3Q9Y3E7 222 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 ANKRD36CQ5JPF3 1778 aa8.53□□□□□ -1.04
SYNE1-229ENST00000490866 KLRG2A4D1S0 409 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-229ENST00000490866 SERPINB2P05120 415 aa8.52□□□□□ -1.05
SYNE1-229ENST00000490866 PTPN12Q05209 780 aaKnown RBP8.52□□□□□ -1.05
SYNE1-229ENST00000490866 NFIXQ14938 502 aa8.52□□□□□ -1.05
SYNE1-229ENST00000490866 EZH2Q15910 746 aaKnown RBP8.52□□□□□ -1.05
SYNE1-229ENST00000490866 ANKRD18AQ8IVF6 992 aa8.52□□□□□ -1.05
SYNE1-229ENST00000490866 RBM17Q96I25 401 aaKnown RBP8.52□□□□□ -1.05
SYNE1-229ENST00000490866 BCL2L12Q9HB09 334 aa8.52□□□□□ -1.05
SYNE1-229ENST00000490866 BSDC1Q9NW68 430 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-229ENST00000490866 STAP2Q9UGK3 403 aa8.52□□□□□ -1.05
SYNE1-229ENST00000490866 UBR3Q6ZT12 1888 aa8.51□□□□□ -1.05
SYNE1-229ENST00000490866 GLRX3O76003 335 aaKnown RBP8.51□□□□□ -1.05
SYNE1-229ENST00000490866 ITGA6P23229 1130 aa8.51□□□□□ -1.05
SYNE1-229ENST00000490866 KCNQ4P56696 695 aa8.51□□□□□ -1.05
SYNE1-229ENST00000490866 RPS8P62241 208 aaKnown RBP8.51□□□□□ -1.05
SYNE1-229ENST00000490866 LSM11P83369 360 aaKnown RBP eCLIP8.51□□□□□ -1.05
SYNE1-229ENST00000490866 BMP2KLQ5H9B9 411 aa8.51□□□□□ -1.05
SYNE1-229ENST00000490866 CCDC158Q5M9N0 1113 aa8.51□□□□□ -1.05
SYNE1-229ENST00000490866 COL23A1Q86Y22 540 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-229ENST00000490866 ZNF454Q8N9F8 522 aa8.51□□□□□ -1.05
SYNE1-229ENST00000490866 FBXW7Q969H0 707 aa8.51□□□□□ -1.05
SYNE1-229ENST00000490866 CRAMP1Q96RY5 1269 aa8.51□□□□□ -1.05
SYNE1-229ENST00000490866 CNNM1Q9NRU3 951 aa8.51□□□□□ -1.05
SYNE1-229ENST00000490866 UBN2Q6ZU65 1347 aa8.51□□□□□ -1.05
SYNE1-229ENST00000490866 TK2O00142 265 aa8.5□□□□□ -1.05
SYNE1-229ENST00000490866 HIP1O00291 1037 aa8.5□□□□□ -1.05
SYNE1-229ENST00000490866 EPB41L2O43491 1005 aaKnown RBP8.5□□□□□ -1.05
SYNE1-229ENST00000490866 POLD1P28340 1107 aa8.5□□□□□ -1.05
SYNE1-229ENST00000490866 HOXA10P31260 410 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-229ENST00000490866 RFX5P48382 616 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-229ENST00000490866 QSER1Q2KHR3 1735 aa8.5□□□□□ -1.05
SYNE1-229ENST00000490866 CC2D2BQ6DHV5 1058 aa8.5□□□□□ -1.05
SYNE1-229ENST00000490866 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.5□□□□□ -1.05
SYNE1-229ENST00000490866 RPGRQ92834 1020 aaKnown RBP8.5□□□□□ -1.05
SYNE1-229ENST00000490866 ZDHHC16Q969W1 377 aa8.5□□□□□ -1.05
SYNE1-229ENST00000490866 ZNF512BQ96KM6 892 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-229ENST00000490866 UPF2Q9HAU5 1272 aaKnown RBP8.5□□□□□ -1.05
SYNE1-229ENST00000490866 TNS1Q9HBL0 1735 aaKnown RBP8.5□□□□□ -1.05
SYNE1-229ENST00000490866 ECHDC1Q9NTX5 307 aa8.5□□□□□ -1.05
SYNE1-229ENST00000490866 EXOC6BQ9Y2D4 811 aa8.5□□□□□ -1.05
SYNE1-229ENST00000490866 BCORQ6W2J9 1755 aa8.5□□□□□ -1.05
SYNE1-229ENST00000490866 MYH3P11055 1940 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 H0YIN7 160 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 POLRMTO00411 1230 aaKnown RBP8.49□□□□□ -1.05
SYNE1-229ENST00000490866 DPYSL4O14531 572 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 PDE8BO95263 885 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 IFIT1P09914 478 aaKnown RBP8.49□□□□□ -1.05
SYNE1-229ENST00000490866 NPR1P16066 1061 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 MX1P20591 662 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 FAM161AQ3B820 660 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 CRY2Q49AN0 593 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 ERFEQ4G0M1 354 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 BICDL1Q6ZP65 573 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 LPIN2Q92539 896 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 EPAS1Q99814 870 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 LNPKQ9C0E8 428 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 GNL3LQ9NVN8 582 aaKnown RBP8.49□□□□□ -1.05
SYNE1-229ENST00000490866 SRP68Q9UHB9 627 aaKnown RBP8.49□□□□□ -1.05
SYNE1-229ENST00000490866 RIPOR2Q9Y4F9 1068 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 SCN7AQ01118 1682 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 PNPLA7Q6ZV29 1317 aa8.49□□□□□ -1.05
SYNE1-229ENST00000490866 UQCRFS1P1P0C7P4 283 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 HCLS1P14317 486 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-229ENST00000490866 PDE1AP54750 535 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 UBE4AQ14139 1066 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 TTF1Q15361 905 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-229ENST00000490866 PUM3Q15397 648 aaKnown RBP8.48□□□□□ -1.05
SYNE1-229ENST00000490866 ZNF827Q17R98 1081 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 CAVIN4Q5BKX8 364 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 RTL5Q5HYW3 569 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-229ENST00000490866 METTL24Q5JXM2 366 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 EPHA10Q5JZY3 1008 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 GORABQ5T7V8 394 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 SOGA3Q5TF21 947 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 PRR5LQ6MZQ0 368 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 PLEKHM2Q8IWE5 1019 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 CNTROBQ8N137 903 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 RUFY2Q8WXA3 655 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms