RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 RSPO4Q2I0M5 234 aaPredicted RBP3.93□□□□□ -1.78
HMGB1-208ENST00000490788 NKAPLQ5M9Q1 402 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 CEP135Q66GS9 1140 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 C20orf204Q6ZNR8 217 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 CACTIN-AS1Q8N1I8 211 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 DCAF11Q8TEB1 546 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 TRIM11Q96F44 468 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 NACC1Q96RE7 527 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 CITED4Q96RK1 184 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 LPIN3Q9BQK8 851 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 KANSL3Q9P2N6 904 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 NAGPAQ9UK23 515 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 TNFRSF21O75509 655 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 HOXD8P13378 290 aaPredicted RBP3.92□□□□□ -1.78
HMGB1-208ENST00000490788 MAPK1P28482 360 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 CABP4P57796 275 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 FOXD4L6Q3SYB3 417 aaPredicted RBP3.92□□□□□ -1.78
HMGB1-208ENST00000490788 MSL1Q68DK7 614 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 FAM117BQ6P1L5 589 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 FOXD4L3Q6VB84 417 aaPredicted RBP3.92□□□□□ -1.78
HMGB1-208ENST00000490788 DMRTC2Q8IXT2 367 aaPredicted RBP3.92□□□□□ -1.78
HMGB1-208ENST00000490788 GJD3Q8N144 294 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 IL22RA1Q8N6P7 574 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 C1orf127Q8N9H9 656 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 TTC9Q92623 222 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 DMRTB1Q96MA1 342 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 MUC3BQ9H195 1237 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 CNTN3Q9P232 1028 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 AMOTL2Q9Y2J4 779 aa3.92□□□□□ -1.78
HMGB1-208ENST00000490788 NISCHQ9Y2I1 1504 aa3.91□□□□□ -1.78
HMGB1-208ENST00000490788 CYP2E1P05181 493 aaPredicted RBP3.91□□□□□ -1.78
HMGB1-208ENST00000490788 NID1P14543 1247 aa3.91□□□□□ -1.78
HMGB1-208ENST00000490788 PTPRAP18433 802 aa3.91□□□□□ -1.78
HMGB1-208ENST00000490788 ARHGAP4P98171 946 aa3.91□□□□□ -1.78
HMGB1-208ENST00000490788 ZSCAN29Q8IWY8 852 aaPredicted RBP3.91□□□□□ -1.78
HMGB1-208ENST00000490788 DTWD1Q8N5C7 304 aa3.91□□□□□ -1.78
HMGB1-208ENST00000490788 LACRTQ9GZZ8 138 aa3.91□□□□□ -1.78
HMGB1-208ENST00000490788 FOXD3Q9UJU5 478 aaPredicted RBP3.91□□□□□ -1.78
HMGB1-208ENST00000490788 DCTN4Q9UJW0 460 aa3.91□□□□□ -1.78
HMGB1-208ENST00000490788 A0A0A0MRY4 1105 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 FAM229AH3BQW9 127 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 EREGO14944 169 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 CPNE3O75131 537 aaKnown RBP3.9□□□□□ -1.79
HMGB1-208ENST00000490788 KIF4AO95239 1232 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 ELNP15502 786 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 CDC27P30260 824 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 ATP11AP98196 1134 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 COL13A1Q5TAT6 717 aaPredicted RBP3.9□□□□□ -1.79
HMGB1-208ENST00000490788 MAP4K3Q8IVH8 894 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 OSMRQ99650 979 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 PBX4Q9BYU1 374 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 RASSF4Q9H2L5 321 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 ZFYVE28Q9HCC9 887 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 USP21Q9UK80 565 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 TRIM33Q9UPN9 1127 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 PPME1Q9Y570 386 aa3.9□□□□□ -1.79
HMGB1-208ENST00000490788 C9orf172C9J069 976 aa3.89□□□□□ -1.79
HMGB1-208ENST00000490788 PDE2AO00408 941 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-208ENST00000490788 DYRK3O43781 588 aa3.89□□□□□ -1.79
HMGB1-208ENST00000490788 CDC25BP30305 580 aa3.89□□□□□ -1.79
HMGB1-208ENST00000490788 ARL4DP49703 201 aa3.89□□□□□ -1.79
HMGB1-208ENST00000490788 NRG1Q02297 640 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-208ENST00000490788 CEP120Q8N960 986 aa3.89□□□□□ -1.79
HMGB1-208ENST00000490788 ASAP3Q8TDY4 903 aa3.89□□□□□ -1.79
HMGB1-208ENST00000490788 RBCK1Q9BYM8 510 aa3.89□□□□□ -1.79
HMGB1-208ENST00000490788 NIF3L1Q9GZT8 377 aa3.89□□□□□ -1.79
HMGB1-208ENST00000490788 SRA1Q9HD15 236 aaKnown RBP3.89□□□□□ -1.79
HMGB1-208ENST00000490788 TPSG1Q9NRR2 321 aa3.89□□□□□ -1.79
HMGB1-208ENST00000490788 SALL4Q9UJQ4 1053 aa3.89□□□□□ -1.79
HMGB1-208ENST00000490788 LINC01387J3KSC0 135 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 GADD45BO75293 160 aaPredicted RBP3.88□□□□□ -1.79
HMGB1-208ENST00000490788 POLR3DP05423 398 aaPredicted RBP3.88□□□□□ -1.79
HMGB1-208ENST00000490788 H2AFB1P0C5Y9 115 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 H2AFB2P0C5Z0 115 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 PLCB3Q01970 1234 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 GRIK4Q16099 956 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 GRIK5Q16478 980 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 ECM1Q16610 540 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 HOMEZQ8IX15 550 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 FMR1NBQ8N0W7 255 aaPredicted RBP3.88□□□□□ -1.79
HMGB1-208ENST00000490788 FAM129BQ96TA1 746 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 DNAJC25Q9H1X3 360 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 CHRDQ9H2X0 955 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 DZANK1Q9NVP4 752 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 NLRP2Q9NX02 1062 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 PPP4R2Q9NY27 417 aa3.88□□□□□ -1.79
HMGB1-208ENST00000490788 COL17A1Q9UMD9 1497 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-208ENST00000490788 ATP2B2Q01814 1243 aa3.87□□□□□ -1.79
HMGB1-208ENST00000490788 ORC1Q13415 861 aa3.87□□□□□ -1.79
HMGB1-208ENST00000490788 COL9A3Q14050 684 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-208ENST00000490788 LRP8Q14114 963 aa3.87□□□□□ -1.79
HMGB1-208ENST00000490788 PRSS36Q5K4E3 855 aa3.87□□□□□ -1.79
HMGB1-208ENST00000490788 TXNDC11Q6PKC3 985 aa3.87□□□□□ -1.79
HMGB1-208ENST00000490788 TMC7Q7Z402 723 aa3.87□□□□□ -1.79
HMGB1-208ENST00000490788 FBXO11Q86XK2 927 aa3.87□□□□□ -1.79
HMGB1-208ENST00000490788 TMEM102Q8N9M5 508 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-208ENST00000490788 SLC7A3Q8WY07 619 aa3.87□□□□□ -1.79
HMGB1-208ENST00000490788 POP1Q99575 1024 aaKnown RBP3.87□□□□□ -1.79
HMGB1-208ENST00000490788 ZKSCAN3Q9BRR0 538 aa3.87□□□□□ -1.79
HMGB1-208ENST00000490788 EHD4Q9H223 541 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms