RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 TAF5LO75529 589 aa16.19■□□□□ 0.18
CHMP3-208ENST00000486404 VIL1P09327 827 aaKnown RBP16.19■□□□□ 0.18
CHMP3-208ENST00000486404 KIF4BQ2VIQ3 1234 aa16.19■□□□□ 0.18
CHMP3-208ENST00000486404 TBC1D10BQ4KMP7 808 aaPredicted RBP16.19■□□□□ 0.18
CHMP3-208ENST00000486404 AGBL3Q8NEM8 1001 aa16.19■□□□□ 0.18
CHMP3-208ENST00000486404 HELBQ8NG08 1087 aaPredicted RBP16.19■□□□□ 0.18
CHMP3-208ENST00000486404 MKRN1Q9UHC7 482 aaKnown RBP16.19■□□□□ 0.18
CHMP3-208ENST00000486404 ABT1Q9ULW3 272 aaKnown RBP16.19■□□□□ 0.18
CHMP3-208ENST00000486404 WTIPA6NIX2 430 aaPredicted RBP16.18■□□□□ 0.18
CHMP3-208ENST00000486404 PLIN1O60240 522 aa16.18■□□□□ 0.18
CHMP3-208ENST00000486404 KLRK1P26718 216 aa16.18■□□□□ 0.18
CHMP3-208ENST00000486404 RARSP54136 660 aaKnown RBP16.18■□□□□ 0.18
CHMP3-208ENST00000486404 RBM26Q5T8P6 1007 aaKnown RBP16.18■□□□□ 0.18
CHMP3-208ENST00000486404 SAMD7Q7Z3H4 446 aa16.18■□□□□ 0.18
CHMP3-208ENST00000486404 ZC3H15Q8WU90 426 aaKnown RBP16.18■□□□□ 0.18
CHMP3-208ENST00000486404 MYO3BQ8WXR4 1341 aa16.18■□□□□ 0.18
CHMP3-208ENST00000486404 CNTNAP1P78357 1384 aa16.17■□□□□ 0.18
CHMP3-208ENST00000486404 UBTFL1P0CB47 393 aaPredicted RBP16.17■□□□□ 0.18
CHMP3-208ENST00000486404 ZNF804AQ7Z570 1209 aa16.17■□□□□ 0.18
CHMP3-208ENST00000486404 GLIS2Q9BZE0 524 aaPredicted RBP16.17■□□□□ 0.18
CHMP3-208ENST00000486404 ECM29Q5VYK3 1845 aa16.17■□□□□ 0.18
CHMP3-208ENST00000486404 TRAF5O00463 557 aa16.16■□□□□ 0.18
CHMP3-208ENST00000486404 USP17L8P0C7I0 530 aa16.16■□□□□ 0.18
CHMP3-208ENST00000486404 HIRAP54198 1017 aaPredicted RBP16.16■□□□□ 0.18
CHMP3-208ENST00000486404 BRPF1P55201 1214 aaPredicted RBP16.16■□□□□ 0.18
CHMP3-208ENST00000486404 RABL6Q3YEC7 729 aaPredicted RBP16.16■□□□□ 0.18
CHMP3-208ENST00000486404 PAXIP1Q6ZW49 1069 aaPredicted RBP16.16■□□□□ 0.18
CHMP3-208ENST00000486404 TXNRD3Q86VQ6 643 aa16.16■□□□□ 0.18
CHMP3-208ENST00000486404 ANKRD44Q8N8A2 993 aa16.16■□□□□ 0.18
CHMP3-208ENST00000486404 JMYQ8N9B5 988 aa16.16■□□□□ 0.18
CHMP3-208ENST00000486404 KAZALD1Q96I82 304 aa16.16■□□□□ 0.18
CHMP3-208ENST00000486404 USP44Q9H0E7 712 aa16.16■□□□□ 0.18
CHMP3-208ENST00000486404 MROH5Q6ZUA9 1318 aa16.16■□□□□ 0.18
CHMP3-208ENST00000486404 STRIP1Q5VSL9 837 aa16.15■□□□□ 0.18
CHMP3-208ENST00000486404 CDC37L1Q7L3B6 337 aa16.15■□□□□ 0.18
CHMP3-208ENST00000486404 FRAT1Q92837 279 aaPredicted RBP16.15■□□□□ 0.18
CHMP3-208ENST00000486404 DCPSQ96C86 337 aaKnown RBP16.15■□□□□ 0.18
CHMP3-208ENST00000486404 ZNF408Q9H9D4 720 aa16.15■□□□□ 0.18
CHMP3-208ENST00000486404 RNF216Q9NWF9 866 aaPredicted RBP16.15■□□□□ 0.18
CHMP3-208ENST00000486404 HDAC5Q9UQL6 1122 aa16.15■□□□□ 0.18
CHMP3-208ENST00000486404 ZBED9Q6R2W3 1325 aa16.15■□□□□ 0.18
CHMP3-208ENST00000486404 IPO8O15397 1037 aaKnown RBP16.14■□□□□ 0.17
CHMP3-208ENST00000486404 EGFRP00533 1210 aa16.14■□□□□ 0.17
CHMP3-208ENST00000486404 METTL24Q5JXM2 366 aa16.14■□□□□ 0.17
CHMP3-208ENST00000486404 KRT26Q7Z3Y9 468 aa16.14■□□□□ 0.17
CHMP3-208ENST00000486404 OGFOD1Q8N543 542 aa16.14■□□□□ 0.17
CHMP3-208ENST00000486404 GGA3Q9NZ52 723 aa16.14■□□□□ 0.17
CHMP3-208ENST00000486404 THSD7BQ9C0I4 1608 aa16.14■□□□□ 0.17
CHMP3-208ENST00000486404 SNAP23O00161 211 aa16.13■□□□□ 0.17
CHMP3-208ENST00000486404 CELF2O95319 508 aaKnown RBP16.13■□□□□ 0.17
CHMP3-208ENST00000486404 ZNF280AP59817 542 aaPredicted RBP16.13■□□□□ 0.17
CHMP3-208ENST00000486404 FMR1Q06787 632 aaKnown RBP eCLIP16.13■□□□□ 0.17
CHMP3-208ENST00000486404 DACT2Q5SW24 774 aa16.13■□□□□ 0.17
CHMP3-208ENST00000486404 TTLL5Q6EMB2 1281 aa16.13■□□□□ 0.17
CHMP3-208ENST00000486404 C15orf52Q6ZUT6 534 aaKnown RBP16.13■□□□□ 0.17
CHMP3-208ENST00000486404 SULF1Q8IWU6 871 aa16.13■□□□□ 0.17
CHMP3-208ENST00000486404 ARHGAP45Q92619 1136 aa16.13■□□□□ 0.17
CHMP3-208ENST00000486404 CD209Q9NNX6 404 aa16.13■□□□□ 0.17
CHMP3-208ENST00000486404 MYOZ2Q9NPC6 264 aa16.13■□□□□ 0.17
CHMP3-208ENST00000486404 PGAP2Q9UHJ9 254 aa16.13■□□□□ 0.17
CHMP3-208ENST00000486404 GTF2IP78347 998 aa16.12■□□□□ 0.17
CHMP3-208ENST00000486404 MXD3Q9BW11 206 aa16.12■□□□□ 0.17
CHMP3-208ENST00000486404 PUS3Q9BZE2 481 aaKnown RBP16.12■□□□□ 0.17
CHMP3-208ENST00000486404 HDAC9Q9UKV0 1011 aa16.12■□□□□ 0.17
CHMP3-208ENST00000486404 RASSF10A6NK89 507 aa16.11■□□□□ 0.17
CHMP3-208ENST00000486404 UBE4AQ14139 1066 aa16.11■□□□□ 0.17
CHMP3-208ENST00000486404 DEFB115Q30KQ5 88 aa16.11■□□□□ 0.17
CHMP3-208ENST00000486404 USP48Q86UV5 1035 aa16.11■□□□□ 0.17
CHMP3-208ENST00000486404 VPS37DQ86XT2 251 aa16.11■□□□□ 0.17
CHMP3-208ENST00000486404 GMLQ99445 158 aa16.11■□□□□ 0.17
CHMP3-208ENST00000486404 LRRFIP2Q9Y608 721 aaKnown RBP16.11■□□□□ 0.17
CHMP3-208ENST00000486404 IRS2Q9Y4H2 1338 aa16.11■□□□□ 0.17
CHMP3-208ENST00000486404 ADM5C9JUS6 153 aa16.1■□□□□ 0.17
CHMP3-208ENST00000486404 BCAR3O75815 825 aa16.1■□□□□ 0.17
CHMP3-208ENST00000486404 TRIM27P14373 513 aa16.1■□□□□ 0.17
CHMP3-208ENST00000486404 VEGFBP49765 207 aa16.1■□□□□ 0.17
CHMP3-208ENST00000486404 GRM1Q13255 1194 aa16.1■□□□□ 0.17
CHMP3-208ENST00000486404 SCARF1Q14162 830 aa16.1■□□□□ 0.17
CHMP3-208ENST00000486404 LRRC24Q50LG9 513 aa16.1■□□□□ 0.17
CHMP3-208ENST00000486404 ANGEL2Q5VTE6 544 aaKnown RBP16.1■□□□□ 0.17
CHMP3-208ENST00000486404 ATF7IPQ6VMQ6 1270 aa16.1■□□□□ 0.17
CHMP3-208ENST00000486404 KIAA0825Q8IV33 1275 aa16.1■□□□□ 0.17
CHMP3-208ENST00000486404 KLHDC4Q8TBB5 520 aa16.1■□□□□ 0.17
CHMP3-208ENST00000486404 GNAI3P08754 354 aa16.09■□□□□ 0.17
CHMP3-208ENST00000486404 HSPA1AP0DMV8 641 aaKnown RBP16.09■□□□□ 0.17
CHMP3-208ENST00000486404 HSPA1BP0DMV9 641 aaKnown RBP16.09■□□□□ 0.17
CHMP3-208ENST00000486404 IL1R1P14778 569 aa16.09■□□□□ 0.17
CHMP3-208ENST00000486404 ECE1P42892 770 aa16.09■□□□□ 0.17
CHMP3-208ENST00000486404 MMP14P50281 582 aa16.09■□□□□ 0.17
CHMP3-208ENST00000486404 INTS3Q68E01 1043 aaKnown RBP16.09■□□□□ 0.17
CHMP3-208ENST00000486404 MEIS3Q99687 375 aa16.09■□□□□ 0.17
CHMP3-208ENST00000486404 RIPOR2Q9Y4F9 1068 aa16.09■□□□□ 0.17
CHMP3-208ENST00000486404 TLL2Q9Y6L7 1015 aa16.09■□□□□ 0.17
CHMP3-208ENST00000486404 ASTN2O75129 1339 aaPredicted RBP16.09■□□□□ 0.17
CHMP3-208ENST00000486404 PAPPA2Q9BXP8 1791 aa16.08■□□□□ 0.17
CHMP3-208ENST00000486404 SASH1O94885 1247 aa16.08■□□□□ 0.16
CHMP3-208ENST00000486404 HIBADHP31937 336 aaKnown RBP16.08■□□□□ 0.16
CHMP3-208ENST00000486404 GYG1P46976 350 aa16.08■□□□□ 0.16
CHMP3-208ENST00000486404 CAVIN4Q5BKX8 364 aa16.08■□□□□ 0.16
CHMP3-208ENST00000486404 CST9Q5W186 159 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms