RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 PIM2Q9P1W9 311 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 SALL2Q9Y467 1007 aaPredicted RBP6.64□□□□□ -1.35
CCDC39-205ENST00000485055 CACNA1SQ13698 1873 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 BTBD11A6QL63 1104 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 HMOX1P09601 288 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 PDE4AP27815 886 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 TNNI2P48788 182 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 TEFQ10587 303 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 CRY2Q49AN0 593 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 TTC5Q8N0Z6 440 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 C7orf43Q8WVR3 580 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 RBM42Q9BTD8 480 aaKnown RBP6.64□□□□□ -1.35
CCDC39-205ENST00000485055 PCDH12Q9NPG4 1184 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 ZMIZ1Q9ULJ6 1067 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 ZBTB1Q9Y2K1 713 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 GRXCR2A6NFK2 248 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 CHL1O00533 1208 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 ZPR1O75312 459 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 GIGYF1O75420 1035 aaPredicted RBP6.63□□□□□ -1.35
CCDC39-205ENST00000485055 HOXA10P31260 410 aaPredicted RBP6.63□□□□□ -1.35
CCDC39-205ENST00000485055 MDM2Q00987 491 aaPredicted RBP6.63□□□□□ -1.35
CCDC39-205ENST00000485055 LDLRAD1Q5T700 205 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 PHOX2BQ99453 314 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 IFT57Q9NWB7 429 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 IL16Q14005 1332 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 HMGB1P1B2RPK0 211 aaPredicted RBP6.63□□□□□ -1.35
CCDC39-205ENST00000485055 SSTR3P32745 418 aaPredicted RBP6.63□□□□□ -1.35
CCDC39-205ENST00000485055 PPP4CP60510 307 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 FILIP1Q7Z7B0 1213 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 NLRP7Q8WX94 980 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 WWC3Q9ULE0 1092 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 MYH3P11055 1940 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 A0A1B0GUL6 1792 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 DPEP1P16444 411 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 C1QTNF8P60827 252 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 FSTL1Q12841 308 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 GPR162Q16538 588 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 EMILIN3Q9NT22 766 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 NRBP1Q9UHY1 535 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 COMMD10Q9Y6G5 202 aa6.63□□□□□ -1.35
CCDC39-205ENST00000485055 SERPINB2P05120 415 aa6.62□□□□□ -1.35
CCDC39-205ENST00000485055 TRIM28Q13263 835 aaKnown RBP6.62□□□□□ -1.35
CCDC39-205ENST00000485055 DALRD3Q5D0E6 543 aaKnown RBP6.62□□□□□ -1.35
CCDC39-205ENST00000485055 WDR78Q5VTH9 848 aa6.62□□□□□ -1.35
CCDC39-205ENST00000485055 NT5DC4Q86YG4 428 aa6.62□□□□□ -1.35
CCDC39-205ENST00000485055 ZNF34Q8IZ26 560 aa6.62□□□□□ -1.35
CCDC39-205ENST00000485055 RUNDC1Q96C34 613 aa6.62□□□□□ -1.35
CCDC39-205ENST00000485055 FBXO9Q9UK97 447 aaPredicted RBP6.62□□□□□ -1.35
CCDC39-205ENST00000485055 ZNF652Q9Y2D9 606 aa6.62□□□□□ -1.35
CCDC39-205ENST00000485055 NBPF26B4DH59 902 aa6.62□□□□□ -1.35
CCDC39-205ENST00000485055 CLK2P49760 499 aaKnown RBP6.62□□□□□ -1.35
CCDC39-205ENST00000485055 VAC14Q08AM6 782 aa6.62□□□□□ -1.35
CCDC39-205ENST00000485055 USPL1Q5W0Q7 1092 aa6.62□□□□□ -1.35
CCDC39-205ENST00000485055 NBPF10Q6P3W6 841 aaKnown RBP6.62□□□□□ -1.35
CCDC39-205ENST00000485055 NBPF15Q8N660 670 aa6.62□□□□□ -1.35
CCDC39-205ENST00000485055 RTF1Q92541 710 aaKnown RBP6.62□□□□□ -1.35
CCDC39-205ENST00000485055 MAP3K20Q9NYL2 800 aaKnown RBP6.62□□□□□ -1.35
CCDC39-205ENST00000485055 ATP2B1P20020 1258 aa6.61□□□□□ -1.35
CCDC39-205ENST00000485055 DNAJA1P31689 397 aaKnown RBP6.61□□□□□ -1.35
CCDC39-205ENST00000485055 TMPOP42166 694 aaKnown RBP6.61□□□□□ -1.35
CCDC39-205ENST00000485055 PDIA6Q15084 440 aa6.61□□□□□ -1.35
CCDC39-205ENST00000485055 GET4Q7L5D6 327 aaPredicted RBP6.61□□□□□ -1.35
CCDC39-205ENST00000485055 CREBRFQ8IUR6 639 aa6.61□□□□□ -1.35
CCDC39-205ENST00000485055 TMC2Q8TDI7 906 aa6.61□□□□□ -1.35
CCDC39-205ENST00000485055 JDP2Q8WYK2 163 aa6.61□□□□□ -1.35
CCDC39-205ENST00000485055 PRKRIP1Q9H875 184 aaPredicted RBP6.61□□□□□ -1.35
CCDC39-205ENST00000485055 MAP3K15Q6ZN16 1313 aa6.61□□□□□ -1.35
CCDC39-205ENST00000485055 KIF3CO14782 793 aa6.61□□□□□ -1.35
CCDC39-205ENST00000485055 U2AF1L5P0DN76 240 aaPredicted RBP6.61□□□□□ -1.35
CCDC39-205ENST00000485055 U2AF1Q01081 240 aaKnown RBP eCLIP6.61□□□□□ -1.35
CCDC39-205ENST00000485055 PRR5LQ6MZQ0 368 aa6.61□□□□□ -1.35
CCDC39-205ENST00000485055 CNKSR1Q969H4 720 aa6.61□□□□□ -1.35
CCDC39-205ENST00000485055 NYXQ9GZU5 481 aa6.61□□□□□ -1.35
CCDC39-205ENST00000485055 SRP68Q9UHB9 627 aaKnown RBP6.61□□□□□ -1.35
CCDC39-205ENST00000485055 PTCD1O75127 700 aaKnown RBP6.6□□□□□ -1.35
CCDC39-205ENST00000485055 S100BP04271 92 aaPredicted RBP6.6□□□□□ -1.35
CCDC39-205ENST00000485055 SRGNP10124 158 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 CALD1Q05682 793 aaKnown RBP6.6□□□□□ -1.35
CCDC39-205ENST00000485055 SLC39A6Q13433 755 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 PARP10Q53GL7 1025 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 L3MBTL3Q96JM7 780 aaPredicted RBP6.6□□□□□ -1.35
CCDC39-205ENST00000485055 CRAMP1Q96RY5 1269 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 TMUB1Q9BVT8 246 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 CAPN10Q9HC96 672 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 LIMD1Q9UGP4 676 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 TRIM35Q9UPQ4 493 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 TRPM7Q96QT4 1865 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 STK10O94804 968 aaKnown RBP6.6□□□□□ -1.35
CCDC39-205ENST00000485055 TBC1D9BQ66K14 1250 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 MSL1Q68DK7 614 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 TMC4Q7Z404 712 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 AMOTL1Q8IY63 956 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 TTLL6Q8N841 843 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 MASTLQ96GX5 879 aa6.6□□□□□ -1.35
CCDC39-205ENST00000485055 RTFDC1Q9BY42 306 aaPredicted RBP6.6□□□□□ -1.35
CCDC39-205ENST00000485055 DDX56Q9NY93 547 aaKnown RBP6.6□□□□□ -1.35
CCDC39-205ENST00000485055 PHF14O94880 888 aa6.59□□□□□ -1.35
CCDC39-205ENST00000485055 NPR1P16066 1061 aa6.59□□□□□ -1.35
CCDC39-205ENST00000485055 HIC1Q14526 733 aa6.59□□□□□ -1.35
CCDC39-205ENST00000485055 ENOX2Q16206 610 aaKnown RBP6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms