RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 OTUD7AQ8TE49 926 aaPredicted RBP12.38□□□□□ -0.43
USP39-215ENST00000481409 HAUS7Q99871 368 aa12.38□□□□□ -0.43
USP39-215ENST00000481409 DBNDD2Q9BQY9 259 aa12.38□□□□□ -0.43
USP39-215ENST00000481409 ANKIB1Q9P2G1 1089 aa12.38□□□□□ -0.43
USP39-215ENST00000481409 U3KPZ7 1027 aaPredicted RBP12.38□□□□□ -0.43
USP39-215ENST00000481409 RFX7Q2KHR2 1363 aa12.38□□□□□ -0.43
USP39-215ENST00000481409 ZNF804BA4D1E1 1349 aa12.37□□□□□ -0.43
USP39-215ENST00000481409 PDS5AQ29RF7 1337 aaKnown RBP12.37□□□□□ -0.43
USP39-215ENST00000481409 GSPT1P15170 499 aaKnown RBP12.37□□□□□ -0.43
USP39-215ENST00000481409 DSG3P32926 999 aa12.37□□□□□ -0.43
USP39-215ENST00000481409 PTGER2P43116 358 aa12.37□□□□□ -0.43
USP39-215ENST00000481409 TTF1Q15361 905 aaPredicted RBP12.37□□□□□ -0.43
USP39-215ENST00000481409 TTC39AQ5SRH9 613 aa12.37□□□□□ -0.43
USP39-215ENST00000481409 TTLL6Q8N841 843 aa12.37□□□□□ -0.43
USP39-215ENST00000481409 ZNF622Q969S3 477 aaKnown RBP eCLIP12.37□□□□□ -0.43
USP39-215ENST00000481409 VPS33BQ9H267 617 aa12.37□□□□□ -0.43
USP39-215ENST00000481409 GGA1Q9UJY5 639 aa12.37□□□□□ -0.43
USP39-215ENST00000481409 ATF5Q9Y2D1 282 aaPredicted RBP12.37□□□□□ -0.43
USP39-215ENST00000481409 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.37□□□□□ -0.43
USP39-215ENST00000481409 COL4A1P02462 1669 aa12.36□□□□□ -0.43
USP39-215ENST00000481409 CDC45O75419 566 aa12.36□□□□□ -0.43
USP39-215ENST00000481409 TAF5LO75529 589 aa12.36□□□□□ -0.43
USP39-215ENST00000481409 SDSP20132 328 aa12.36□□□□□ -0.43
USP39-215ENST00000481409 CCDC102BQ68D86 513 aa12.36□□□□□ -0.43
USP39-215ENST00000481409 PRPF40BQ6NWY9 871 aaKnown RBP12.36□□□□□ -0.43
USP39-215ENST00000481409 SKAP1Q86WV1 359 aa12.36□□□□□ -0.43
USP39-215ENST00000481409 SUPT20HQ8NEM7 779 aa12.36□□□□□ -0.43
USP39-215ENST00000481409 HELBQ8NG08 1087 aaPredicted RBP12.36□□□□□ -0.43
USP39-215ENST00000481409 EYA3Q99504 573 aa12.36□□□□□ -0.43
USP39-215ENST00000481409 TLR7Q9NYK1 1049 aaKnown RBP12.36□□□□□ -0.43
USP39-215ENST00000481409 LTBP1Q14766 1721 aa12.36□□□□□ -0.43
USP39-215ENST00000481409 AK9Q5TCS8 1911 aa12.35□□□□□ -0.43
USP39-215ENST00000481409 MED23Q9ULK4 1368 aa12.35□□□□□ -0.43
USP39-215ENST00000481409 PSDA5PKW4 1024 aaPredicted RBP12.35□□□□□ -0.43
USP39-215ENST00000481409 CAPN15O75808 1086 aa12.35□□□□□ -0.43
USP39-215ENST00000481409 FBXO33Q7Z6M2 555 aa12.35□□□□□ -0.43
USP39-215ENST00000481409 RTKN2Q8IZC4 609 aa12.35□□□□□ -0.43
USP39-215ENST00000481409 MPNDQ8N594 471 aa12.35□□□□□ -0.43
USP39-215ENST00000481409 RTFDC1Q9BY42 306 aaPredicted RBP12.35□□□□□ -0.43
USP39-215ENST00000481409 PIM2Q9P1W9 311 aa12.35□□□□□ -0.43
USP39-215ENST00000481409 NSFL1CQ9UNZ2 370 aaKnown RBP12.35□□□□□ -0.43
USP39-215ENST00000481409 TRIM6-TRIM34B2RNG4 842 aa12.34□□□□□ -0.43
USP39-215ENST00000481409 EPB41L2O43491 1005 aaKnown RBP12.34□□□□□ -0.43
USP39-215ENST00000481409 HIBADHP31937 336 aaKnown RBP12.34□□□□□ -0.43
USP39-215ENST00000481409 GPSM2P81274 684 aa12.34□□□□□ -0.43
USP39-215ENST00000481409 DPP8Q6V1X1 898 aaPredicted RBP12.34□□□□□ -0.43
USP39-215ENST00000481409 ZNF804AQ7Z570 1209 aa12.34□□□□□ -0.43
USP39-215ENST00000481409 VPS37DQ86XT2 251 aa12.34□□□□□ -0.43
USP39-215ENST00000481409 C7orf43Q8WVR3 580 aa12.34□□□□□ -0.43
USP39-215ENST00000481409 BACH2Q9BYV9 841 aa12.34□□□□□ -0.43
USP39-215ENST00000481409 BOLA2Q9H3K6 86 aa12.34□□□□□ -0.43
USP39-215ENST00000481409 DENND2AQ9ULE3 1009 aa12.34□□□□□ -0.43
USP39-215ENST00000481409 DUOX1Q9NRD9 1551 aa12.34□□□□□ -0.43
USP39-215ENST00000481409 IRS2Q9Y4H2 1338 aa12.34□□□□□ -0.43
USP39-215ENST00000481409 KIAA1551Q9HCM1 1747 aa12.34□□□□□ -0.43
USP39-215ENST00000481409 UFL1O94874 794 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 ZFYP08048 801 aaPredicted RBP12.33□□□□□ -0.44
USP39-215ENST00000481409 DPEP1P16444 411 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 KCNA3P22001 575 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 CHRNA5P30532 468 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 ADORA1P30542 326 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 C8orf34Q49A92 452 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 CCDC93Q567U6 631 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 ZSCAN25Q6NSZ9 544 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 TBC1D16Q8TBP0 767 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 RUFY2Q8WXA3 655 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 RILPL2Q969X0 211 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 BCL11AQ9H165 835 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 PAG1Q9NWQ8 432 aa12.33□□□□□ -0.44
USP39-215ENST00000481409 BRCA1P38398 1863 aaKnown RBP12.33□□□□□ -0.44
USP39-215ENST00000481409 SLX4Q8IY92 1834 aa12.32□□□□□ -0.44
USP39-215ENST00000481409 ZGPATQ8N5A5 531 aaKnown RBP12.32□□□□□ -0.44
USP39-215ENST00000481409 KBTBD3Q8NAB2 608 aa12.32□□□□□ -0.44
USP39-215ENST00000481409 FAM84BQ96KN1 310 aaPredicted RBP12.32□□□□□ -0.44
USP39-215ENST00000481409 PSMD1Q99460 953 aa12.32□□□□□ -0.44
USP39-215ENST00000481409 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.32□□□□□ -0.44
USP39-215ENST00000481409 COA1Q9GZY4 146 aa12.32□□□□□ -0.44
USP39-215ENST00000481409 AKAP11Q9UKA4 1901 aa12.32□□□□□ -0.44
USP39-215ENST00000481409 RAD50Q92878 1312 aa12.32□□□□□ -0.44
USP39-215ENST00000481409 CACNA1SQ13698 1873 aa12.31□□□□□ -0.44
USP39-215ENST00000481409 IL1R1P14778 569 aa12.31□□□□□ -0.44
USP39-215ENST00000481409 PHKA1P46020 1223 aa12.31□□□□□ -0.44
USP39-215ENST00000481409 DALRD3Q5D0E6 543 aaKnown RBP12.31□□□□□ -0.44
USP39-215ENST00000481409 TSHZ3Q63HK5 1081 aa12.31□□□□□ -0.44
USP39-215ENST00000481409 SPATA5Q8NB90 893 aa12.31□□□□□ -0.44
USP39-215ENST00000481409 ZC3H12CQ9C0D7 883 aaKnown RBP12.31□□□□□ -0.44
USP39-215ENST00000481409 UPF2Q9HAU5 1272 aaKnown RBP12.31□□□□□ -0.44
USP39-215ENST00000481409 SNED1Q8TER0 1413 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 A0A0G2JLW4 131 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 C6orf229H3BNL8 230 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 SOCS7O14512 581 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 REC8O95072 547 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 MCAMP43121 646 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 BCAMP50895 628 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 FKBP4Q02790 459 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP39-215ENST00000481409 TBC1D9Q6ZT07 1266 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 TDRD7Q8NHU6 1098 aaKnown RBP12.3□□□□□ -0.44
USP39-215ENST00000481409 WDR66Q8TBY9 1149 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 FSD1Q9BTV5 496 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 POLLQ9UGP5 575 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms