RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 CNTNAP1P78357 1384 aa27.41■■□□□ 1.98
COL9A3-211ENST00000477612 LDHAL6AQ6ZMR3 332 aa27.41■■□□□ 1.98
COL9A3-211ENST00000477612 BICC1Q9H694 974 aaKnown RBP27.41■■□□□ 1.98
COL9A3-211ENST00000477612 ZNF280AP59817 542 aaPredicted RBP27.4■■□□□ 1.98
COL9A3-211ENST00000477612 ANKRD44Q8N8A2 993 aa27.4■■□□□ 1.98
COL9A3-211ENST00000477612 TAF5LO75529 589 aa27.39■■□□□ 1.98
COL9A3-211ENST00000477612 EGFRP00533 1210 aa27.39■■□□□ 1.98
COL9A3-211ENST00000477612 KLRK1P26718 216 aa27.39■■□□□ 1.98
COL9A3-211ENST00000477612 TAF7LQ5H9L4 462 aa27.39■■□□□ 1.98
COL9A3-211ENST00000477612 STRIP1Q5VSL9 837 aa27.39■■□□□ 1.98
COL9A3-211ENST00000477612 ARHGAP45Q92619 1136 aa27.39■■□□□ 1.98
COL9A3-211ENST00000477612 API5Q9BZZ5 524 aaKnown RBP27.39■■□□□ 1.98
COL9A3-211ENST00000477612 FMR1Q06787 632 aaKnown RBP eCLIP27.38■■□□□ 1.97
COL9A3-211ENST00000477612 TBC1D10BQ4KMP7 808 aaPredicted RBP27.38■■□□□ 1.97
COL9A3-211ENST00000477612 DACT2Q5SW24 774 aa27.38■■□□□ 1.97
COL9A3-211ENST00000477612 CDC37L1Q7L3B6 337 aa27.38■■□□□ 1.97
COL9A3-211ENST00000477612 HELBQ8NG08 1087 aaPredicted RBP27.38■■□□□ 1.97
COL9A3-211ENST00000477612 RASSF10A6NK89 507 aa27.37■■□□□ 1.97
COL9A3-211ENST00000477612 TRAF5O00463 557 aa27.37■■□□□ 1.97
COL9A3-211ENST00000477612 KCNJ4P48050 445 aa27.37■■□□□ 1.97
COL9A3-211ENST00000477612 CST9Q5W186 159 aa27.37■■□□□ 1.97
COL9A3-211ENST00000477612 CNNM1Q9NRU3 951 aa27.37■■□□□ 1.97
COL9A3-211ENST00000477612 MKRN1Q9UHC7 482 aaKnown RBP27.37■■□□□ 1.97
COL9A3-211ENST00000477612 SNAP23O00161 211 aa27.36■■□□□ 1.97
COL9A3-211ENST00000477612 GLIS2Q9BZE0 524 aaPredicted RBP27.36■■□□□ 1.97
COL9A3-211ENST00000477612 CD209Q9NNX6 404 aa27.36■■□□□ 1.97
COL9A3-211ENST00000477612 RIPOR2Q9Y4F9 1068 aa27.36■■□□□ 1.97
COL9A3-211ENST00000477612 MYO3BQ8WXR4 1341 aa27.36■■□□□ 1.97
COL9A3-211ENST00000477612 USP17L8P0C7I0 530 aa27.35■■□□□ 1.97
COL9A3-211ENST00000477612 HNRNPUQ00839 825 aaKnown RBP eCLIP27.35■■□□□ 1.97
COL9A3-211ENST00000477612 KIF4BQ2VIQ3 1234 aa27.35■■□□□ 1.97
COL9A3-211ENST00000477612 KIF16BQ96L93 1317 aa27.35■■□□□ 1.97
COL9A3-211ENST00000477612 MMP14P50281 582 aa27.34■■□□□ 1.97
COL9A3-211ENST00000477612 PUS3Q9BZE2 481 aaKnown RBP27.34■■□□□ 1.97
COL9A3-211ENST00000477612 UBE4AQ14139 1066 aa27.33■■□□□ 1.97
COL9A3-211ENST00000477612 DEFB115Q30KQ5 88 aa27.33■■□□□ 1.97
COL9A3-211ENST00000477612 RBM26Q5T8P6 1007 aaKnown RBP27.33■■□□□ 1.97
COL9A3-211ENST00000477612 TTLL5Q6EMB2 1281 aa27.33■■□□□ 1.97
COL9A3-211ENST00000477612 IL1R1P14778 569 aa27.32■■□□□ 1.96
COL9A3-211ENST00000477612 MROH5Q6ZUA9 1318 aa27.32■■□□□ 1.96
COL9A3-211ENST00000477612 VEGFBP49765 207 aa27.31■■□□□ 1.96
COL9A3-211ENST00000477612 MYOZ2Q9NPC6 264 aa27.31■■□□□ 1.96
COL9A3-211ENST00000477612 INTS3Q68E01 1043 aaKnown RBP27.3■■□□□ 1.96
COL9A3-211ENST00000477612 ZNF804AQ7Z570 1209 aa27.3■■□□□ 1.96
COL9A3-211ENST00000477612 USP48Q86UV5 1035 aa27.3■■□□□ 1.96
COL9A3-211ENST00000477612 DCPSQ96C86 337 aaKnown RBP27.3■■□□□ 1.96
COL9A3-211ENST00000477612 TLL2Q9Y6L7 1015 aa27.3■■□□□ 1.96
COL9A3-211ENST00000477612 PLIN1O60240 522 aa27.29■■□□□ 1.96
COL9A3-211ENST00000477612 RFX5P48382 616 aaPredicted RBP27.29■■□□□ 1.96
COL9A3-211ENST00000477612 GTF2IP78347 998 aa27.29■■□□□ 1.96
COL9A3-211ENST00000477612 MXD3Q9BW11 206 aa27.29■■□□□ 1.96
COL9A3-211ENST00000477612 ABT1Q9ULW3 272 aaKnown RBP27.29■■□□□ 1.96
COL9A3-211ENST00000477612 CELF2O95319 508 aaKnown RBP27.28■■□□□ 1.96
COL9A3-211ENST00000477612 UBTFL1P0CB47 393 aaPredicted RBP27.28■■□□□ 1.96
COL9A3-211ENST00000477612 SCARF1Q14162 830 aa27.28■■□□□ 1.96
COL9A3-211ENST00000477612 LRRC24Q50LG9 513 aa27.28■■□□□ 1.96
COL9A3-211ENST00000477612 KRT26Q7Z3Y9 468 aa27.28■■□□□ 1.96
COL9A3-211ENST00000477612 HDAC5Q9UQL6 1122 aa27.28■■□□□ 1.96
COL9A3-211ENST00000477612 ZBED9Q6R2W3 1325 aa27.27■■□□□ 1.96
COL9A3-211ENST00000477612 IPO8O15397 1037 aaKnown RBP27.27■■□□□ 1.96
COL9A3-211ENST00000477612 FKBP1AP62942 108 aaKnown RBP27.27■■□□□ 1.96
COL9A3-211ENST00000477612 OGFOD1Q8N543 542 aa27.27■■□□□ 1.96
COL9A3-211ENST00000477612 VGLL2Q8N8G2 317 aa27.27■■□□□ 1.96
COL9A3-211ENST00000477612 HHIPL1Q96JK4 782 aa27.27■■□□□ 1.96
COL9A3-211ENST00000477612 PITPNM2Q9BZ72 1349 aa27.26■■□□□ 1.95
COL9A3-211ENST00000477612 SAPCD2Q86UD0 394 aa27.26■■□□□ 1.95
COL9A3-211ENST00000477612 FBXW7Q969H0 707 aa27.26■■□□□ 1.95
COL9A3-211ENST00000477612 GGA3Q9NZ52 723 aa27.26■■□□□ 1.95
COL9A3-211ENST00000477612 ASTN2O75129 1339 aaPredicted RBP27.25■■□□□ 1.95
COL9A3-211ENST00000477612 BCAR3O75815 825 aa27.25■■□□□ 1.95
COL9A3-211ENST00000477612 PDE8BO95263 885 aa27.25■■□□□ 1.95
COL9A3-211ENST00000477612 PTPN12Q05209 780 aaKnown RBP27.25■■□□□ 1.95
COL9A3-211ENST00000477612 KLHDC4Q8TBB5 520 aa27.25■■□□□ 1.95
COL9A3-211ENST00000477612 THSD7BQ9C0I4 1608 aa27.25■■□□□ 1.95
COL9A3-211ENST00000477612 WDR33Q9C0J8 1336 aaKnown RBP27.24■■□□□ 1.95
COL9A3-211ENST00000477612 SASH1O94885 1247 aa27.24■■□□□ 1.95
COL9A3-211ENST00000477612 HSPA1AP0DMV8 641 aaKnown RBP27.24■■□□□ 1.95
COL9A3-211ENST00000477612 HSPA1BP0DMV9 641 aaKnown RBP27.24■■□□□ 1.95
COL9A3-211ENST00000477612 ATF7IPQ6VMQ6 1270 aa27.24■■□□□ 1.95
COL9A3-211ENST00000477612 TDRD7Q8NHU6 1098 aaKnown RBP27.24■■□□□ 1.95
COL9A3-211ENST00000477612 FAM84BQ96KN1 310 aaPredicted RBP27.24■■□□□ 1.95
COL9A3-211ENST00000477612 FBXO3Q9UK99 471 aa27.24■■□□□ 1.95
COL9A3-211ENST00000477612 ECM29Q5VYK3 1845 aa27.23■■□□□ 1.95
COL9A3-211ENST00000477612 FAM205AQ6ZU69 1335 aa27.23■■□□□ 1.95
COL9A3-211ENST00000477612 TRIM27P14373 513 aa27.23■■□□□ 1.95
COL9A3-211ENST00000477612 ANGEL2Q5VTE6 544 aaKnown RBP27.23■■□□□ 1.95
COL9A3-211ENST00000477612 SULF1Q8IWU6 871 aa27.23■■□□□ 1.95
COL9A3-211ENST00000477612 HDAC9Q9UKV0 1011 aa27.23■■□□□ 1.95
COL9A3-211ENST00000477612 ADM5C9JUS6 153 aa27.22■■□□□ 1.95
COL9A3-211ENST00000477612 EYA2O00167 538 aa27.22■■□□□ 1.95
COL9A3-211ENST00000477612 WNT10BO00744 389 aa27.22■■□□□ 1.95
COL9A3-211ENST00000477612 HIBADHP31937 336 aaKnown RBP27.22■■□□□ 1.95
COL9A3-211ENST00000477612 METTL24Q5JXM2 366 aa27.22■■□□□ 1.95
COL9A3-211ENST00000477612 DLK2Q6UY11 383 aa27.22■■□□□ 1.95
COL9A3-211ENST00000477612 CERS5Q8N5B7 392 aa27.22■■□□□ 1.95
COL9A3-211ENST00000477612 ZBED3Q96IU2 234 aaPredicted RBP27.22■■□□□ 1.95
COL9A3-211ENST00000477612 MEIS3Q99687 375 aa27.22■■□□□ 1.95
COL9A3-211ENST00000477612 ECE1P42892 770 aa27.21■■□□□ 1.95
COL9A3-211ENST00000477612 NBPF9Q3BBW0 867 aa27.21■■□□□ 1.95
COL9A3-211ENST00000477612 FBXO33Q7Z6M2 555 aa27.21■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms