RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 LRRC24Q50LG9 513 aa19.52■□□□□ 0.72
TMEM53-208ENST00000476724 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.52■□□□□ 0.72
TMEM53-208ENST00000476724 NEUROD6Q96NK8 337 aa19.52■□□□□ 0.72
TMEM53-208ENST00000476724 TAF1LQ8IZX4 1826 aa19.52■□□□□ 0.72
TMEM53-208ENST00000476724 SPEF2Q9C093 1822 aa19.52■□□□□ 0.72
TMEM53-208ENST00000476724 VPS37CA5D8V6 355 aaPredicted RBP19.52■□□□□ 0.71
TMEM53-208ENST00000476724 MSNP26038 577 aaKnown RBP19.52■□□□□ 0.71
TMEM53-208ENST00000476724 PAG1Q9NWQ8 432 aa19.52■□□□□ 0.71
TMEM53-208ENST00000476724 FIBPO43427 364 aa19.51■□□□□ 0.71
TMEM53-208ENST00000476724 CSF1RP07333 972 aa19.51■□□□□ 0.71
TMEM53-208ENST00000476724 DNM1Q05193 864 aaKnown RBP19.51■□□□□ 0.71
TMEM53-208ENST00000476724 SUSD4Q5VX71 490 aa19.51■□□□□ 0.71
TMEM53-208ENST00000476724 DDX46Q7L014 1031 aaKnown RBP19.51■□□□□ 0.71
TMEM53-208ENST00000476724 PUS3Q9BZE2 481 aaKnown RBP19.51■□□□□ 0.71
TMEM53-208ENST00000476724 FAM177BA6PVY3 158 aa19.5■□□□□ 0.71
TMEM53-208ENST00000476724 IRS4O14654 1257 aaPredicted RBP19.5■□□□□ 0.71
TMEM53-208ENST00000476724 DSCC1Q9BVC3 393 aa19.5■□□□□ 0.71
TMEM53-208ENST00000476724 CNTNAP4Q9C0A0 1308 aa19.5■□□□□ 0.71
TMEM53-208ENST00000476724 KRT85P78386 507 aa19.5■□□□□ 0.71
TMEM53-208ENST00000476724 CCNL1Q9UK58 526 aaPredicted RBP19.5■□□□□ 0.71
TMEM53-208ENST00000476724 TAF6LQ9Y6J9 622 aa19.5■□□□□ 0.71
TMEM53-208ENST00000476724 EP400Q96L91 3159 aa19.5■□□□□ 0.71
TMEM53-208ENST00000476724 CYP21A2P08686 494 aa19.49■□□□□ 0.71
TMEM53-208ENST00000476724 NOL7Q9UMY1 257 aaKnown RBP19.49■□□□□ 0.71
TMEM53-208ENST00000476724 ELP1O95163 1332 aa19.49■□□□□ 0.71
TMEM53-208ENST00000476724 TIMM10P62072 90 aa19.48■□□□□ 0.71
TMEM53-208ENST00000476724 CCDC57Q2TAC2 916 aa19.48■□□□□ 0.71
TMEM53-208ENST00000476724 LRRFIP1Q32MZ4 808 aaKnown RBP19.48■□□□□ 0.71
TMEM53-208ENST00000476724 TTLL11Q8NHH1 800 aa19.48■□□□□ 0.71
TMEM53-208ENST00000476724 CEP126Q9P2H0 1117 aa19.48■□□□□ 0.71
TMEM53-208ENST00000476724 NDUFB9Q9Y6M9 179 aa19.48■□□□□ 0.71
TMEM53-208ENST00000476724 GOLIM4O00461 696 aa19.48■□□□□ 0.71
TMEM53-208ENST00000476724 MCM5P33992 734 aa19.48■□□□□ 0.71
TMEM53-208ENST00000476724 ZMYM1Q5SVZ6 1142 aa19.48■□□□□ 0.71
TMEM53-208ENST00000476724 TCEANC2Q96MN5 208 aa19.48■□□□□ 0.71
TMEM53-208ENST00000476724 SEC62Q99442 399 aaKnown RBP19.48■□□□□ 0.71
TMEM53-208ENST00000476724 CCDC39Q9UFE4 941 aa19.48■□□□□ 0.71
TMEM53-208ENST00000476724 AKAP2Q9Y2D5 859 aa19.48■□□□□ 0.71
TMEM53-208ENST00000476724 A0A1B0GUL7 405 aa19.47■□□□□ 0.71
TMEM53-208ENST00000476724 IFIT1P09914 478 aaKnown RBP19.47■□□□□ 0.71
TMEM53-208ENST00000476724 CTSWP56202 376 aa19.47■□□□□ 0.71
TMEM53-208ENST00000476724 CCDC129Q6ZRS4 1044 aa19.47■□□□□ 0.71
TMEM53-208ENST00000476724 RNF214Q8ND24 703 aa19.47■□□□□ 0.71
TMEM53-208ENST00000476724 GTF3C6Q969F1 213 aa19.47■□□□□ 0.71
TMEM53-208ENST00000476724 GREM2Q9H772 168 aa19.47■□□□□ 0.71
TMEM53-208ENST00000476724 ANO8Q9HCE9 1232 aaPredicted RBP19.47■□□□□ 0.71
TMEM53-208ENST00000476724 NIP7Q9Y221 180 aaKnown RBP eCLIP19.47■□□□□ 0.71
TMEM53-208ENST00000476724 DDX60Q8IY21 1712 aaKnown RBP19.47■□□□□ 0.71
TMEM53-208ENST00000476724 COL9A3Q14050 684 aaPredicted RBP19.47■□□□□ 0.71
TMEM53-208ENST00000476724 AMIGO3Q86WK7 504 aa19.47■□□□□ 0.71
TMEM53-208ENST00000476724 SCN7AQ01118 1682 aa19.46■□□□□ 0.71
TMEM53-208ENST00000476724 PDE8AO60658 829 aa19.46■□□□□ 0.71
TMEM53-208ENST00000476724 Q6ZUG5 572 aa19.46■□□□□ 0.71
TMEM53-208ENST00000476724 SCAND2PQ9GZW5 306 aaPredicted RBP19.46■□□□□ 0.71
TMEM53-208ENST00000476724 RNF113AO15541 343 aaKnown RBP19.45■□□□□ 0.7
TMEM53-208ENST00000476724 IFIT5Q13325 482 aaKnown RBP19.45■□□□□ 0.7
TMEM53-208ENST00000476724 CCDC158Q5M9N0 1113 aa19.45■□□□□ 0.7
TMEM53-208ENST00000476724 CDC37L1Q7L3B6 337 aa19.45■□□□□ 0.7
TMEM53-208ENST00000476724 DHX32Q7L7V1 743 aaKnown RBP19.45■□□□□ 0.7
TMEM53-208ENST00000476724 LLPHQ9BRT6 129 aaKnown RBP19.45■□□□□ 0.7
TMEM53-208ENST00000476724 HCLS1P14317 486 aaPredicted RBP19.45■□□□□ 0.7
TMEM53-208ENST00000476724 ITGA6P23229 1130 aa19.45■□□□□ 0.7
TMEM53-208ENST00000476724 RC3H1Q5TC82 1133 aaKnown RBP19.45■□□□□ 0.7
TMEM53-208ENST00000476724 KRT27Q7Z3Y8 459 aa19.45■□□□□ 0.7
TMEM53-208ENST00000476724 CHMP4CQ96CF2 233 aa19.45■□□□□ 0.7
TMEM53-208ENST00000476724 UTP14AQ9BVJ6 771 aaKnown RBP19.45■□□□□ 0.7
TMEM53-208ENST00000476724 BCL11BQ9C0K0 894 aaPredicted RBP19.45■□□□□ 0.7
TMEM53-208ENST00000476724 GNPATO15228 680 aa19.44■□□□□ 0.7
TMEM53-208ENST00000476724 RPS6KA4O75676 772 aa19.44■□□□□ 0.7
TMEM53-208ENST00000476724 NTSR2O95665 410 aa19.44■□□□□ 0.7
TMEM53-208ENST00000476724 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.44■□□□□ 0.7
TMEM53-208ENST00000476724 C4BP0C0L5 1744 aa19.44■□□□□ 0.7
TMEM53-208ENST00000476724 PARP10Q53GL7 1025 aa19.44■□□□□ 0.7
TMEM53-208ENST00000476724 NAP1L5Q96NT1 182 aaPredicted RBP19.44■□□□□ 0.7
TMEM53-208ENST00000476724 BCL2L12Q9HB09 334 aa19.44■□□□□ 0.7
TMEM53-208ENST00000476724 ZFYP08048 801 aaPredicted RBP19.43■□□□□ 0.7
TMEM53-208ENST00000476724 HSP90B1P14625 803 aaKnown RBP19.43■□□□□ 0.7
TMEM53-208ENST00000476724 STK3Q13188 491 aa19.43■□□□□ 0.7
TMEM53-208ENST00000476724 TAF7LQ5H9L4 462 aa19.43■□□□□ 0.7
TMEM53-208ENST00000476724 LRRC4BQ9NT99 713 aa19.43■□□□□ 0.7
TMEM53-208ENST00000476724 SRP68Q9UHB9 627 aaKnown RBP19.43■□□□□ 0.7
TMEM53-208ENST00000476724 LAMB2P55268 1798 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 ABCC12Q96J65 1359 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 ZNF500O60304 480 aaPredicted RBP19.42■□□□□ 0.7
TMEM53-208ENST00000476724 CHGBP05060 677 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 FGD1P98174 961 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 ZNF652Q9Y2D9 606 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 ZKSCAN5Q9Y2L8 839 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 PFKFB2O60825 505 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 HSPD1P10809 573 aaKnown RBP19.42■□□□□ 0.7
TMEM53-208ENST00000476724 CLEC4GQ6UXB4 293 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 TTC6Q86TZ1 520 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 FUCA2Q9BTY2 467 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 AGXT2Q9BYV1 514 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 ZSCAN16Q9H4T2 348 aaPredicted RBP19.42■□□□□ 0.7
TMEM53-208ENST00000476724 LAMA4Q16363 1823 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 C4AP0C0L4 1744 aa19.42■□□□□ 0.7
TMEM53-208ENST00000476724 CASZ1Q86V15 1759 aa19.41■□□□□ 0.7
TMEM53-208ENST00000476724 ANKRD18BA2A2Z9 1011 aa19.41■□□□□ 0.7
TMEM53-208ENST00000476724 EXOSC10Q01780 885 aaKnown RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms