RNA–Protein interactions for RNA: ENST00000475558.5

SHQ1-207, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 5

Gene SHQ1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-207ENST00000475558 PARP10Q53GL7 1025 aa8.71□□□□□ -1.02
SHQ1-207ENST00000475558 CC2D2BQ6DHV5 1058 aa8.71□□□□□ -1.02
SHQ1-207ENST00000475558 GIGYF2Q6Y7W6 1299 aaKnown RBP8.71□□□□□ -1.02
SHQ1-207ENST00000475558 HS3ST6Q96QI5 342 aa8.71□□□□□ -1.02
SHQ1-207ENST00000475558 PSMD1Q99460 953 aa8.71□□□□□ -1.02
SHQ1-207ENST00000475558 BEGAINQ9BUH8 593 aa8.71□□□□□ -1.02
SHQ1-207ENST00000475558 DCTPP1Q9H773 170 aa8.71□□□□□ -1.02
SHQ1-207ENST00000475558 CWC25Q9NXE8 425 aaPredicted RBP8.71□□□□□ -1.02
SHQ1-207ENST00000475558 NIP7Q9Y221 180 aaKnown RBP eCLIP8.71□□□□□ -1.02
SHQ1-207ENST00000475558 PCDHB15Q9Y5E8 787 aa8.71□□□□□ -1.02
SHQ1-207ENST00000475558 BCORQ6W2J9 1755 aa8.71□□□□□ -1.02
SHQ1-207ENST00000475558 NEURL1BA8MQ27 555 aa8.7□□□□□ -1.02
SHQ1-207ENST00000475558 LMOD1P29536 600 aaPredicted RBP8.7□□□□□ -1.02
SHQ1-207ENST00000475558 GCKRQ14397 625 aa8.7□□□□□ -1.02
SHQ1-207ENST00000475558 PROSER3Q2NL68 480 aa8.7□□□□□ -1.02
SHQ1-207ENST00000475558 FAM161AQ3B820 660 aa8.7□□□□□ -1.02
SHQ1-207ENST00000475558 GRIPAP1Q4V328 841 aa8.7□□□□□ -1.02
SHQ1-207ENST00000475558 SMC5Q8IY18 1101 aa8.7□□□□□ -1.02
SHQ1-207ENST00000475558 MAP3K15Q6ZN16 1313 aa8.7□□□□□ -1.02
SHQ1-207ENST00000475558 ADAMTSL1Q8N6G6 1762 aa8.7□□□□□ -1.02
SHQ1-207ENST00000475558 FAM177BA6PVY3 158 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 H7C1W4 665 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 ANXA1P04083 346 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 PIP4K2AP48426 406 aaPredicted RBP8.69□□□□□ -1.02
SHQ1-207ENST00000475558 RGS19P49795 217 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 MLLT1Q03111 559 aaPredicted RBP8.69□□□□□ -1.02
SHQ1-207ENST00000475558 MTX1Q13505 466 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 OLFM4Q6UX06 510 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 PPP1R42Q7Z4L9 355 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 SPOCK2Q92563 424 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 CAPNS2Q96L46 248 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 GPR101Q96P66 508 aaPredicted RBP8.69□□□□□ -1.02
SHQ1-207ENST00000475558 MYD88Q99836 296 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 ISCA1Q9BUE6 129 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 NYXQ9GZU5 481 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 TNNQ9UQP3 1299 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 GJA3Q9Y6H8 435 aa8.69□□□□□ -1.02
SHQ1-207ENST00000475558 CCDC85CA6NKD9 419 aa8.68□□□□□ -1.02
SHQ1-207ENST00000475558 IGHDP01880 384 aa8.68□□□□□ -1.02
SHQ1-207ENST00000475558 MAP2K2P36507 400 aa8.68□□□□□ -1.02
SHQ1-207ENST00000475558 CRY2Q49AN0 593 aa8.68□□□□□ -1.02
SHQ1-207ENST00000475558 CEP85Q6P2H3 762 aa8.68□□□□□ -1.02
SHQ1-207ENST00000475558 PAXIP1Q6ZW49 1069 aaPredicted RBP8.68□□□□□ -1.02
SHQ1-207ENST00000475558 USP50Q70EL3 339 aaPredicted RBP8.68□□□□□ -1.02
SHQ1-207ENST00000475558 ERC1Q8IUD2 1116 aa8.68□□□□□ -1.02
SHQ1-207ENST00000475558 ZBTB38Q8NAP3 1195 aaPredicted RBP8.68□□□□□ -1.02
SHQ1-207ENST00000475558 SSH3Q8TE77 659 aa8.68□□□□□ -1.02
SHQ1-207ENST00000475558 MEIS3Q99687 375 aa8.68□□□□□ -1.02
SHQ1-207ENST00000475558 BOLA1Q9Y3E2 137 aa8.68□□□□□ -1.02
SHQ1-207ENST00000475558 PCCAP05165 728 aaPredicted RBP8.67□□□□□ -1.02
SHQ1-207ENST00000475558 IGKV5-2P06315 115 aa8.67□□□□□ -1.02
SHQ1-207ENST00000475558 HOXA10P31260 410 aaPredicted RBP8.67□□□□□ -1.02
SHQ1-207ENST00000475558 EPS15P42566 896 aa8.67□□□□□ -1.02
SHQ1-207ENST00000475558 HLFQ16534 295 aa8.67□□□□□ -1.02
SHQ1-207ENST00000475558 CYP4F22Q6NT55 531 aa8.67□□□□□ -1.02
SHQ1-207ENST00000475558 TTLL7Q6ZT98 887 aa8.67□□□□□ -1.02
SHQ1-207ENST00000475558 LARGE2Q8N3Y3 721 aa8.67□□□□□ -1.02
SHQ1-207ENST00000475558 RPGRQ92834 1020 aaKnown RBP8.67□□□□□ -1.02
SHQ1-207ENST00000475558 PLA2G12BQ9BX93 195 aa8.67□□□□□ -1.02
SHQ1-207ENST00000475558 TRPM7Q96QT4 1865 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 KDM3BQ7LBC6 1761 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 SNED1Q8TER0 1413 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 CA12O43570 354 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 NBPF7P0C2Y1 421 aaPredicted RBP8.66□□□□□ -1.02
SHQ1-207ENST00000475558 SCNN1DP51172 638 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 NUCB1Q02818 461 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 GRM1Q13255 1194 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 CST9Q5W186 159 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 ZNF34Q8IZ26 560 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 ZNF710Q8N1W2 664 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 CRAMP1Q96RY5 1269 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 TMX4Q9H1E5 349 aaPredicted RBP8.66□□□□□ -1.02
SHQ1-207ENST00000475558 VPS33BQ9H267 617 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 NOP58Q9Y2X3 529 aaKnown RBP8.66□□□□□ -1.02
SHQ1-207ENST00000475558 LRRFIP2Q9Y608 721 aaKnown RBP8.66□□□□□ -1.02
SHQ1-207ENST00000475558 TLL2Q9Y6L7 1015 aa8.66□□□□□ -1.02
SHQ1-207ENST00000475558 CDHR2Q9BYE9 1310 aa8.65□□□□□ -1.02
SHQ1-207ENST00000475558 SRGAP3O43295 1099 aa8.65□□□□□ -1.02
SHQ1-207ENST00000475558 FMR1Q06787 632 aaKnown RBP eCLIP8.65□□□□□ -1.02
SHQ1-207ENST00000475558 G3BP1Q13283 466 aaKnown RBP eCLIP8.65□□□□□ -1.02
SHQ1-207ENST00000475558 CWF19L2Q2TBE0 894 aaKnown RBP8.65□□□□□ -1.02
SHQ1-207ENST00000475558 ANKRD45Q5TZF3 282 aa8.65□□□□□ -1.02
SHQ1-207ENST00000475558 CHD1LQ86WJ1 897 aa8.65□□□□□ -1.02
SHQ1-207ENST00000475558 NIM1KQ8IY84 436 aa8.65□□□□□ -1.02
SHQ1-207ENST00000475558 KIF1BPQ96EK5 621 aa8.65□□□□□ -1.02
SHQ1-207ENST00000475558 RBM17Q96I25 401 aaKnown RBP8.65□□□□□ -1.02
SHQ1-207ENST00000475558 UTP14AQ9BVJ6 771 aaKnown RBP8.65□□□□□ -1.02
SHQ1-207ENST00000475558 ZBTB3Q9H5J0 574 aa8.65□□□□□ -1.02
SHQ1-207ENST00000475558 ADARB2Q9NS39 739 aaKnown RBP8.65□□□□□ -1.02
SHQ1-207ENST00000475558 CACNA1FO60840 1977 aa8.64□□□□□ -1.03
SHQ1-207ENST00000475558 POTEB3A0JP26 581 aa8.64□□□□□ -1.03
SHQ1-207ENST00000475558 ATP5J2-PTCD1G3V325 749 aa8.64□□□□□ -1.03
SHQ1-207ENST00000475558 TRAF5O00463 557 aa8.64□□□□□ -1.03
SHQ1-207ENST00000475558 RABL6Q3YEC7 729 aaPredicted RBP8.64□□□□□ -1.03
SHQ1-207ENST00000475558 POTEBQ6S5H4 581 aa8.64□□□□□ -1.03
SHQ1-207ENST00000475558 SAPCD2Q86UD0 394 aa8.64□□□□□ -1.03
SHQ1-207ENST00000475558 NLRP10Q86W26 655 aa8.64□□□□□ -1.03
SHQ1-207ENST00000475558 NUTM1Q86Y26 1132 aa8.64□□□□□ -1.03
SHQ1-207ENST00000475558 SIRT2Q8IXJ6 389 aa8.64□□□□□ -1.03
SHQ1-207ENST00000475558 HHIPL1Q96JK4 782 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms