RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 SLC10A5Q5PT55 438 aa14.61□□□□□ -0.07
SYNE1-222ENST00000474655 BLOC1S2Q6QNY1 142 aa14.61□□□□□ -0.07
SYNE1-222ENST00000474655 BCL2L12Q9HB09 334 aa14.61□□□□□ -0.07
SYNE1-222ENST00000474655 CYP21A2P08686 494 aa14.6□□□□□ -0.07
SYNE1-222ENST00000474655 SF3B3Q15393 1217 aaKnown RBP14.6□□□□□ -0.07
SYNE1-222ENST00000474655 OSBP2Q969R2 916 aa14.6□□□□□ -0.07
SYNE1-222ENST00000474655 SEC31BQ9NQW1 1179 aa14.6□□□□□ -0.07
SYNE1-222ENST00000474655 TRPC5Q9UL62 973 aaPredicted RBP14.6□□□□□ -0.07
SYNE1-222ENST00000474655 UQCRFS1P1P0C7P4 283 aa14.6□□□□□ -0.07
SYNE1-222ENST00000474655 HSPD1P10809 573 aaKnown RBP14.6□□□□□ -0.07
SYNE1-222ENST00000474655 COL9A3Q14050 684 aaPredicted RBP14.6□□□□□ -0.07
SYNE1-222ENST00000474655 TTF1Q15361 905 aaPredicted RBP14.6□□□□□ -0.07
SYNE1-222ENST00000474655 SLFNL1Q499Z3 407 aa14.6□□□□□ -0.07
SYNE1-222ENST00000474655 MEX3CQ5U5Q3 659 aaKnown RBP14.6□□□□□ -0.07
SYNE1-222ENST00000474655 CCDC102BQ68D86 513 aa14.6□□□□□ -0.07
SYNE1-222ENST00000474655 MPHOSPH8Q99549 860 aa14.6□□□□□ -0.07
SYNE1-222ENST00000474655 FAM177BA6PVY3 158 aa14.59□□□□□ -0.07
SYNE1-222ENST00000474655 LARGE1O95461 756 aa14.59□□□□□ -0.07
SYNE1-222ENST00000474655 KCNQ4P56696 695 aa14.59□□□□□ -0.07
SYNE1-222ENST00000474655 APPBP2Q92624 585 aa14.59□□□□□ -0.07
SYNE1-222ENST00000474655 NEK1Q96PY6 1258 aa14.59□□□□□ -0.07
SYNE1-222ENST00000474655 CCNL1Q9UK58 526 aaPredicted RBP14.59□□□□□ -0.07
SYNE1-222ENST00000474655 COL4A1P02462 1669 aa14.59□□□□□ -0.07
SYNE1-222ENST00000474655 M0R2C6 588 aa14.58□□□□□ -0.08
SYNE1-222ENST00000474655 IGHMBP2P38935 993 aaKnown RBP14.58□□□□□ -0.08
SYNE1-222ENST00000474655 TOB2Q14106 344 aaPredicted RBP14.58□□□□□ -0.08
SYNE1-222ENST00000474655 ME3Q16798 604 aa14.58□□□□□ -0.08
SYNE1-222ENST00000474655 TPCN1Q9ULQ1 816 aa14.58□□□□□ -0.08
SYNE1-222ENST00000474655 TAF1P21675 1872 aa14.58□□□□□ -0.08
SYNE1-222ENST00000474655 TCHHQ07283 1943 aa14.58□□□□□ -0.08
SYNE1-222ENST00000474655 HMGB1P09429 215 aaKnown RBP14.57□□□□□ -0.08
SYNE1-222ENST00000474655 SLC5A1P13866 664 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 PHKA1P46020 1223 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 ST3GAL1Q11201 340 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 ERFEQ4G0M1 354 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 TBC1D9BQ66K14 1250 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 ZSCAN25Q6NSZ9 544 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 PI16Q6UXB8 463 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 CDC5LQ99459 802 aaKnown RBP14.57□□□□□ -0.08
SYNE1-222ENST00000474655 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.57□□□□□ -0.08
SYNE1-222ENST00000474655 WDR33Q9C0J8 1336 aaKnown RBP14.57□□□□□ -0.08
SYNE1-222ENST00000474655 FOXP2O15409 715 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 PDIA4P13667 645 aaKnown RBP14.57□□□□□ -0.08
SYNE1-222ENST00000474655 ADD2P35612 726 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 FAM182BQ5T319 152 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 SEPT12Q8IYM1 358 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 LARP6Q9BRS8 491 aaKnown RBP14.57□□□□□ -0.08
SYNE1-222ENST00000474655 NYXQ9GZU5 481 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 LMBRD1Q9NUN5 540 aa14.57□□□□□ -0.08
SYNE1-222ENST00000474655 UBR3Q6ZT12 1888 aa14.56□□□□□ -0.08
SYNE1-222ENST00000474655 UBE3CQ15386 1083 aa14.56□□□□□ -0.08
SYNE1-222ENST00000474655 KLHL40Q2TBA0 621 aa14.56□□□□□ -0.08
SYNE1-222ENST00000474655 MCTP1Q6DN14 999 aa14.56□□□□□ -0.08
SYNE1-222ENST00000474655 STOX1Q6ZVD7 989 aa14.56□□□□□ -0.08
SYNE1-222ENST00000474655 HELBQ8NG08 1087 aaPredicted RBP14.56□□□□□ -0.08
SYNE1-222ENST00000474655 AGXT2Q9BYV1 514 aa14.56□□□□□ -0.08
SYNE1-222ENST00000474655 BCL11BQ9C0K0 894 aaPredicted RBP14.56□□□□□ -0.08
SYNE1-222ENST00000474655 RTCBQ9Y3I0 505 aaKnown RBP14.56□□□□□ -0.08
SYNE1-222ENST00000474655 BRWD3Q6RI45 1802 aa14.56□□□□□ -0.08
SYNE1-222ENST00000474655 GNPATO15228 680 aa14.55□□□□□ -0.08
SYNE1-222ENST00000474655 FBXL16Q8N461 479 aa14.55□□□□□ -0.08
SYNE1-222ENST00000474655 PUS7LQ9H0K6 701 aaKnown RBP14.55□□□□□ -0.08
SYNE1-222ENST00000474655 SMC3Q9UQE7 1217 aa14.55□□□□□ -0.08
SYNE1-222ENST00000474655 FSD2A1L4K1 749 aa14.55□□□□□ -0.08
SYNE1-222ENST00000474655 CHRNDQ07001 517 aa14.55□□□□□ -0.08
SYNE1-222ENST00000474655 CCDC83Q8IWF9 413 aa14.55□□□□□ -0.08
SYNE1-222ENST00000474655 SETDB2Q96T68 719 aa14.55□□□□□ -0.08
SYNE1-222ENST00000474655 BSDC1Q9NW68 430 aaPredicted RBP14.55□□□□□ -0.08
SYNE1-222ENST00000474655 CTNNA3Q9UI47 895 aa14.55□□□□□ -0.08
SYNE1-222ENST00000474655 ZPR1O75312 459 aa14.54□□□□□ -0.08
SYNE1-222ENST00000474655 SYT1P21579 422 aa14.54□□□□□ -0.08
SYNE1-222ENST00000474655 EXOSC10Q01780 885 aaKnown RBP14.54□□□□□ -0.08
SYNE1-222ENST00000474655 WASHC4Q2M389 1173 aa14.54□□□□□ -0.08
SYNE1-222ENST00000474655 C3orf67Q6ZVT6 689 aa14.54□□□□□ -0.08
SYNE1-222ENST00000474655 DHX32Q7L7V1 743 aaKnown RBP14.54□□□□□ -0.08
SYNE1-222ENST00000474655 SPATA5Q8NB90 893 aa14.54□□□□□ -0.08
SYNE1-222ENST00000474655 ARHGEF1Q92888 912 aaKnown RBP14.54□□□□□ -0.08
SYNE1-222ENST00000474655 PIH1D3Q9NQM4 214 aaKnown RBP14.54□□□□□ -0.08
SYNE1-222ENST00000474655 TCRBV5S4A2TA0A5A2 114 aa14.53□□□□□ -0.08
SYNE1-222ENST00000474655 E7EWF7 191 aa14.53□□□□□ -0.08
SYNE1-222ENST00000474655 STX6O43752 255 aa14.53□□□□□ -0.08
SYNE1-222ENST00000474655 GJB2P29033 226 aa14.53□□□□□ -0.08
SYNE1-222ENST00000474655 RASGRF1Q13972 1273 aa14.53□□□□□ -0.08
SYNE1-222ENST00000474655 SLC9C2Q5TAH2 1124 aa14.53□□□□□ -0.08
SYNE1-222ENST00000474655 AMIGO3Q86WK7 504 aa14.53□□□□□ -0.08
SYNE1-222ENST00000474655 ANKRD18AQ8IVF6 992 aa14.53□□□□□ -0.08
SYNE1-222ENST00000474655 TCEANC2Q96MN5 208 aa14.53□□□□□ -0.08
SYNE1-222ENST00000474655 SRP68Q9UHB9 627 aaKnown RBP14.53□□□□□ -0.08
SYNE1-222ENST00000474655 ISY1Q9ULR0 285 aaKnown RBP14.53□□□□□ -0.08
SYNE1-222ENST00000474655 ZNF804BA4D1E1 1349 aa14.53□□□□□ -0.08
SYNE1-222ENST00000474655 GPAA1O43292 621 aa14.52□□□□□ -0.08
SYNE1-222ENST00000474655 ZSCAN22P10073 491 aaPredicted RBP14.52□□□□□ -0.08
SYNE1-222ENST00000474655 UBE4AQ14139 1066 aa14.52□□□□□ -0.08
SYNE1-222ENST00000474655 SMIM5Q71RC9 77 aa14.52□□□□□ -0.08
SYNE1-222ENST00000474655 QTRT2Q9H974 415 aaKnown RBP14.52□□□□□ -0.08
SYNE1-222ENST00000474655 SNAP23O00161 211 aa14.52□□□□□ -0.09
SYNE1-222ENST00000474655 FGAP02671 866 aa14.52□□□□□ -0.09
SYNE1-222ENST00000474655 PDE6AP16499 860 aa14.52□□□□□ -0.09
SYNE1-222ENST00000474655 ADRA2BP18089 450 aa14.52□□□□□ -0.09
SYNE1-222ENST00000474655 TPTE2Q6XPS3 522 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms