RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 IFIT5Q13325 482 aaKnown RBP15.02■□□□□ -0
COL6A3-209ENST00000472056 METTL24Q5JXM2 366 aa15.02■□□□□ -0
COL6A3-209ENST00000472056 SSH1Q8WYL5 1049 aa15.02■□□□□ -0
COL6A3-209ENST00000472056 NUP58Q9BVL2 599 aa15.02■□□□□ -0
COL6A3-209ENST00000472056 IFIT3O14879 490 aaKnown RBP15.02□□□□□ -0.01
COL6A3-209ENST00000472056 RBBP5Q15291 538 aaKnown RBP15.02□□□□□ -0.01
COL6A3-209ENST00000472056 TAF7Q15545 349 aaPredicted RBP15.02□□□□□ -0.01
COL6A3-209ENST00000472056 KRBA2Q6ZNG9 492 aa15.02□□□□□ -0.01
COL6A3-209ENST00000472056 GOLGA8AA7E2F4 631 aa15.02□□□□□ -0.01
COL6A3-209ENST00000472056 DNAJC8O75937 253 aaPredicted RBP15.02□□□□□ -0.01
COL6A3-209ENST00000472056 MFSD6Q6ZSS7 791 aa15.02□□□□□ -0.01
COL6A3-209ENST00000472056 BAG3O95817 575 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 IBSPP21815 317 aaPredicted RBP15.01□□□□□ -0.01
COL6A3-209ENST00000472056 HAUS2Q9NVX0 235 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 DBF4Q9UBU7 674 aaPredicted RBP15.01□□□□□ -0.01
COL6A3-209ENST00000472056 TTC41PQ6P2S7 1318 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 ZNF444Q8N0Y2 327 aaPredicted RBP15.01□□□□□ -0.01
COL6A3-209ENST00000472056 PARP2Q9UGN5 583 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 NUP160Q12769 1436 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 NAIPQ13075 1403 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 KRT13P13646 458 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 CALM1P0DP23 149 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 CALM2P0DP24 149 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 CALM3P0DP25 149 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 ZGPATQ8N5A5 531 aaKnown RBP15.01□□□□□ -0.01
COL6A3-209ENST00000472056 IMPG2Q9BZV3 1241 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 NUCKS1Q9H1E3 243 aaKnown RBP15.01□□□□□ -0.01
COL6A3-209ENST00000472056 RNF10Q8N5U6 811 aaKnown RBP15.01□□□□□ -0.01
COL6A3-209ENST00000472056 EXOC6BQ9Y2D4 811 aa15.01□□□□□ -0.01
COL6A3-209ENST00000472056 CLNS1AP54105 237 aaKnown RBP15.01□□□□□ -0.01
COL6A3-209ENST00000472056 GBP7Q8N8V2 638 aaPredicted RBP15.01□□□□□ -0.01
COL6A3-209ENST00000472056 WDHD1O75717 1129 aaPredicted RBP15□□□□□ -0.01
COL6A3-209ENST00000472056 CHMP4BP1P59074 171 aa15□□□□□ -0.01
COL6A3-209ENST00000472056 NEK11Q8NG66 645 aa15□□□□□ -0.01
COL6A3-209ENST00000472056 ZEB2O60315 1214 aa15□□□□□ -0.01
COL6A3-209ENST00000472056 PRXQ9BXM0 1461 aa15□□□□□ -0.01
COL6A3-209ENST00000472056 TCERG1LQ5VWI1 586 aa15□□□□□ -0.01
COL6A3-209ENST00000472056 RPUSD2Q8IZ73 545 aaKnown RBP15□□□□□ -0.01
COL6A3-209ENST00000472056 SEC62Q99442 399 aaKnown RBP15□□□□□ -0.01
COL6A3-209ENST00000472056 CDK19Q9BWU1 502 aa15□□□□□ -0.01
COL6A3-209ENST00000472056 RTL9Q8NET4 1388 aa15□□□□□ -0.01
COL6A3-209ENST00000472056 TPD52P55327 224 aaPredicted RBP15□□□□□ -0.01
COL6A3-209ENST00000472056 HSP90AA5PQ58FG0 334 aa15□□□□□ -0.01
COL6A3-209ENST00000472056 RBM26Q5T8P6 1007 aaKnown RBP15□□□□□ -0.01
COL6A3-209ENST00000472056 SNX16P57768 344 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 BRD3Q15059 726 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 SYNCQ9H7C4 482 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 ATP6V1AP38606 617 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 PPP2R3AQ06190 1150 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 TMEM67Q5HYA8 995 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 UBL4BQ8N7F7 174 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 BIVM-ERCC5R4GMW8 1640 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 EVI5O60447 810 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 PPFIA4O75335 1185 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 F13A1P00488 732 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 GNAT2P19087 354 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 RPL13P26373 211 aaKnown RBP14.99□□□□□ -0.01
COL6A3-209ENST00000472056 LLPHQ9BRT6 129 aaKnown RBP14.99□□□□□ -0.01
COL6A3-209ENST00000472056 TRIM27P14373 513 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 TMX3Q96JJ7 454 aa14.99□□□□□ -0.01
COL6A3-209ENST00000472056 BAG1Q99933 345 aaPredicted RBP14.99□□□□□ -0.01
COL6A3-209ENST00000472056 AKR1B15C9JRZ8 316 aaPredicted RBP14.99□□□□□ -0.01
COL6A3-209ENST00000472056 CCDC186Q7Z3E2 898 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 TRERF1Q96PN7 1200 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 PRAM1Q96QH2 718 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 ORC3Q9UBD5 711 aaPredicted RBP14.98□□□□□ -0.01
COL6A3-209ENST00000472056 UBA5Q9GZZ9 404 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 CYP26C1Q6V0L0 522 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 FCHSD1Q86WN1 690 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 NAPGQ99747 312 aaPredicted RBP14.98□□□□□ -0.01
COL6A3-209ENST00000472056 TEX13AQ9BXU3 409 aaPredicted RBP14.98□□□□□ -0.01
COL6A3-209ENST00000472056 ARHGEF12Q9NZN5 1544 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 HVCN1Q96D96 273 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 SRGAP1Q7Z6B7 1085 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 SYCE1Q8N0S2 351 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 PSMC4P43686 418 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 GSTO1P78417 241 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 GSTA5Q7RTV2 222 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 UTP14AQ9BVJ6 771 aaKnown RBP14.98□□□□□ -0.01
COL6A3-209ENST00000472056 ANKRD36BQ8N2N9 1353 aa14.98□□□□□ -0.01
COL6A3-209ENST00000472056 USP48Q86UV5 1035 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 MCUR1Q96AQ8 359 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 NAP1L4Q99733 375 aaKnown RBP14.97□□□□□ -0.01
COL6A3-209ENST00000472056 POGZQ7Z3K3 1410 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 ZNF445P59923 1031 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 SEL1L2Q5TEA6 688 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 ARMC9Q7Z3E5 817 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 HMGB3O15347 200 aaKnown RBP14.97□□□□□ -0.01
COL6A3-209ENST00000472056 LDHCP07864 332 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 GOLGA6BA6NDN3 693 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 VIMP08670 466 aaKnown RBP14.97□□□□□ -0.01
COL6A3-209ENST00000472056 SLMAPQ14BN4 828 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 PHLDB3Q6NSJ2 640 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 KIFAP3Q92845 792 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 LGSNQ5TDP6 509 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 PPP1R9BQ96SB3 815 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 USP16Q9Y5T5 823 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 GOLGA8QA0A0J9YX86 632 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 GOLGA8OA6NCC3 632 aa14.97□□□□□ -0.01
COL6A3-209ENST00000472056 GOLGA8NF8WBI6 632 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms