RNA–Protein interactions for RNA: ENST00000470463.1

SND1-208, Transcript of staphylococcal nuclease and tudor domain containing 1, human

TSL 4

Gene SND1, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SND1-208	ENST00000470463	RNF113A	O15541	343 aa	Known RBP	13.19	□□□□□ -0.3
SND1-208	ENST00000470463	PTGER2	P43116	358 aa		13.19	□□□□□ -0.3
SND1-208	ENST00000470463	RPS8	P62241	208 aa	Known RBP	13.19	□□□□□ -0.3
SND1-208	ENST00000470463	KRT32	Q14532	448 aa		13.19	□□□□□ -0.3
SND1-208	ENST00000470463	NFIX	Q14938	502 aa		13.19	□□□□□ -0.3
SND1-208	ENST00000470463	TMED8	Q6PL24	325 aa	Predicted RBP	13.19	□□□□□ -0.3
SND1-208	ENST00000470463	NLGN1	Q8N2Q7	840 aa		13.19	□□□□□ -0.3
SND1-208	ENST00000470463	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.19	□□□□□ -0.3
SND1-208	ENST00000470463	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.19	□□□□□ -0.3
SND1-208	ENST00000470463	SEC31B	Q9NQW1	1179 aa		13.19	□□□□□ -0.3
SND1-208	ENST00000470463		U3KPZ7	1027 aa	Predicted RBP	13.19	□□□□□ -0.3
SND1-208	ENST00000470463	ARAP2	Q8WZ64	1704 aa		13.19	□□□□□ -0.3
SND1-208	ENST00000470463	TNS1	Q9HBL0	1735 aa	Known RBP	13.19	□□□□□ -0.3
SND1-208	ENST00000470463	GYS1	P13807	737 aa		13.18	□□□□□ -0.3
SND1-208	ENST00000470463	SLC4A3	P48751	1232 aa		13.18	□□□□□ -0.3
SND1-208	ENST00000470463	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
SND1-208	ENST00000470463	CHRND	Q07001	517 aa		13.18	□□□□□ -0.3
SND1-208	ENST00000470463	ZMYM1	Q5SVZ6	1142 aa		13.18	□□□□□ -0.3
SND1-208	ENST00000470463	CCDC102B	Q68D86	513 aa		13.18	□□□□□ -0.3
SND1-208	ENST00000470463	DSCC1	Q9BVC3	393 aa		13.18	□□□□□ -0.3
SND1-208	ENST00000470463	TFCP2L1	Q9NZI6	479 aa		13.18	□□□□□ -0.3
SND1-208	ENST00000470463		A0A0D9SFI3	127 aa		13.17	□□□□□ -0.3
SND1-208	ENST00000470463	SEMA3E	O15041	775 aa		13.17	□□□□□ -0.3
SND1-208	ENST00000470463	TM4SF1	P30408	202 aa		13.17	□□□□□ -0.3
SND1-208	ENST00000470463	NEK4	P51957	841 aa		13.17	□□□□□ -0.3
SND1-208	ENST00000470463	NECTIN1	Q15223	517 aa		13.17	□□□□□ -0.3
SND1-208	ENST00000470463	TSGA10IP	Q3SY00	556 aa		13.17	□□□□□ -0.3
SND1-208	ENST00000470463	CAVIN4	Q5BKX8	364 aa		13.17	□□□□□ -0.3
SND1-208	ENST00000470463	TMC4	Q7Z404	712 aa		13.17	□□□□□ -0.3
SND1-208	ENST00000470463	FAM227B	Q96M60	508 aa		13.17	□□□□□ -0.3
SND1-208	ENST00000470463	CWC22	Q9HCG8	908 aa	Known RBP	13.17	□□□□□ -0.3
SND1-208	ENST00000470463	CHMP5	Q9NZZ3	219 aa		13.17	□□□□□ -0.3
SND1-208	ENST00000470463	TAF5L	O75529	589 aa		13.16	□□□□□ -0.3
SND1-208	ENST00000470463	ADORA1	P30542	326 aa		13.16	□□□□□ -0.3
SND1-208	ENST00000470463	ANP32E	Q9BTT0	268 aa		13.16	□□□□□ -0.3
SND1-208	ENST00000470463	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.16	□□□□□ -0.3
SND1-208	ENST00000470463	CTNNA3	Q9UI47	895 aa		13.16	□□□□□ -0.3
SND1-208	ENST00000470463	RBM8A	Q9Y5S9	174 aa	Known RBP	13.16	□□□□□ -0.3
SND1-208	ENST00000470463	SERPINB2	P05120	415 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	MCAM	P43121	646 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	MAP3K12	Q12852	859 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	GRAP	Q13588	217 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	ANKRD1	Q15327	319 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	UBE3C	Q15386	1083 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	GPR162	Q16538	588 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	SPATA5	Q8NB90	893 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	GRAPL	Q8TC17	118 aa	Predicted RBP	13.15	□□□□□ -0.3
SND1-208	ENST00000470463	APPBP2	Q92624	585 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	RPGR	Q92834	1020 aa	Known RBP	13.15	□□□□□ -0.3
SND1-208	ENST00000470463	AKT1S1	Q96B36	256 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	RBM17	Q96I25	401 aa	Known RBP	13.15	□□□□□ -0.3
SND1-208	ENST00000470463	IL25	Q9H293	177 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	MINPP1	Q9UNW1	487 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	SNX14	Q9Y5W7	946 aa		13.15	□□□□□ -0.3
SND1-208	ENST00000470463	PDS5A	Q29RF7	1337 aa	Known RBP	13.14	□□□□□ -0.31
SND1-208	ENST00000470463	HMGB1	P09429	215 aa	Known RBP	13.14	□□□□□ -0.31
SND1-208	ENST00000470463	ZAP70	P43403	619 aa		13.14	□□□□□ -0.31
SND1-208	ENST00000470463	PTH1R	Q03431	593 aa		13.14	□□□□□ -0.31
SND1-208	ENST00000470463	CRY2	Q49AN0	593 aa		13.14	□□□□□ -0.31
SND1-208	ENST00000470463	CREB3L3	Q68CJ9	461 aa		13.14	□□□□□ -0.31
SND1-208	ENST00000470463	PRR5L	Q6MZQ0	368 aa		13.14	□□□□□ -0.31
SND1-208	ENST00000470463	PRPF40B	Q6NWY9	871 aa	Known RBP	13.14	□□□□□ -0.31
SND1-208	ENST00000470463	AMIGO3	Q86WK7	504 aa		13.14	□□□□□ -0.31
SND1-208	ENST00000470463	HELB	Q8NG08	1087 aa	Predicted RBP	13.14	□□□□□ -0.31
SND1-208	ENST00000470463	EDC3	Q96F86	508 aa	Known RBP	13.14	□□□□□ -0.31
SND1-208	ENST00000470463	ANTXR1	Q9H6X2	564 aa		13.14	□□□□□ -0.31
SND1-208	ENST00000470463	LEMD3	Q9Y2U8	911 aa		13.14	□□□□□ -0.31
SND1-208	ENST00000470463	CYP46A1	Q9Y6A2	500 aa		13.14	□□□□□ -0.31
SND1-208	ENST00000470463	ZNF804B	A4D1E1	1349 aa		13.13	□□□□□ -0.31
SND1-208	ENST00000470463	BBOX1	O75936	387 aa		13.13	□□□□□ -0.31
SND1-208	ENST00000470463	PHKA1	P46020	1223 aa		13.13	□□□□□ -0.31
SND1-208	ENST00000470463	IFFO2	Q5TF58	517 aa		13.13	□□□□□ -0.31
SND1-208	ENST00000470463	VPS53	Q5VIR6	699 aa		13.13	□□□□□ -0.31
SND1-208	ENST00000470463	VPS37D	Q86XT2	251 aa		13.13	□□□□□ -0.31
SND1-208	ENST00000470463	INTS4	Q96HW7	963 aa	Known RBP	13.13	□□□□□ -0.31
SND1-208	ENST00000470463	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.13	□□□□□ -0.31
SND1-208	ENST00000470463	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.13	□□□□□ -0.31
SND1-208	ENST00000470463	DENND2A	Q9ULE3	1009 aa		13.13	□□□□□ -0.31
SND1-208	ENST00000470463	PALD1	Q9ULE6	856 aa		13.13	□□□□□ -0.31
SND1-208	ENST00000470463	KLRG2	A4D1S0	409 aa	Predicted RBP	13.12	□□□□□ -0.31
SND1-208	ENST00000470463	SLC27A2	O14975	620 aa		13.12	□□□□□ -0.31
SND1-208	ENST00000470463	PDIA4	P13667	645 aa	Known RBP	13.12	□□□□□ -0.31
SND1-208	ENST00000470463	POLD1	P28340	1107 aa		13.12	□□□□□ -0.31
SND1-208	ENST00000470463	ADD2	P35612	726 aa		13.12	□□□□□ -0.31
SND1-208	ENST00000470463	WASHC4	Q2M389	1173 aa		13.12	□□□□□ -0.31
SND1-208	ENST00000470463	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.12	□□□□□ -0.31
SND1-208	ENST00000470463	SLC16A10	Q8TF71	515 aa		13.12	□□□□□ -0.31
SND1-208	ENST00000470463	CELF1	Q92879	486 aa	Known RBP	13.12	□□□□□ -0.31
SND1-208	ENST00000470463	CHMP4C	Q96CF2	233 aa		13.12	□□□□□ -0.31
SND1-208	ENST00000470463	CRAMP1	Q96RY5	1269 aa		13.12	□□□□□ -0.31
SND1-208	ENST00000470463	SLK	Q9H2G2	1235 aa	Predicted RBP	13.12	□□□□□ -0.31
SND1-208	ENST00000470463	ZSWIM6	Q9HCJ5	1215 aa		13.12	□□□□□ -0.31
SND1-208	ENST00000470463	POLRMT	O00411	1230 aa	Known RBP	13.11	□□□□□ -0.31
SND1-208	ENST00000470463	CYP2E1	P05181	493 aa	Predicted RBP	13.11	□□□□□ -0.31
SND1-208	ENST00000470463	CAST	P20810	708 aa	Known RBP	13.11	□□□□□ -0.31
SND1-208	ENST00000470463	HOXA10	P31260	410 aa	Predicted RBP	13.11	□□□□□ -0.31
SND1-208	ENST00000470463	NUCB2	P80303	420 aa		13.11	□□□□□ -0.31
SND1-208	ENST00000470463	SCARF1	Q14162	830 aa		13.11	□□□□□ -0.31
SND1-208	ENST00000470463	SLC9C2	Q5TAH2	1124 aa		13.11	□□□□□ -0.31
SND1-208	ENST00000470463	C3orf67	Q6ZVT6	689 aa		13.11	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms