RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 KDM6AO15550 1401 aaPredicted RBP6.17□□□□□ -1.42
SF3B1-208ENST00000470268 CEMIPQ8WUJ3 1361 aa6.17□□□□□ -1.42
SF3B1-208ENST00000470268 PKD1L3Q7Z443 1732 aa6.17□□□□□ -1.42
SF3B1-208ENST00000470268 PALM3A6NDB9 673 aaPredicted RBP6.17□□□□□ -1.42
SF3B1-208ENST00000470268 GNAT3A8MTJ3 354 aa6.17□□□□□ -1.42
SF3B1-208ENST00000470268 EXOC5O00471 708 aa6.17□□□□□ -1.42
SF3B1-208ENST00000470268 DDB1Q16531 1140 aa6.17□□□□□ -1.42
SF3B1-208ENST00000470268 ZNF772Q68DY9 489 aaPredicted RBP6.17□□□□□ -1.42
SF3B1-208ENST00000470268 SH3BP5LQ7L8J4 393 aa6.17□□□□□ -1.42
SF3B1-208ENST00000470268 IFNL2Q8IZJ0 200 aa6.17□□□□□ -1.42
SF3B1-208ENST00000470268 MARCH10Q8NA82 808 aaPredicted RBP6.17□□□□□ -1.42
SF3B1-208ENST00000470268 PURBQ96QR8 312 aaKnown RBP6.17□□□□□ -1.42
SF3B1-208ENST00000470268 KLF16Q9BXK1 252 aaPredicted RBP6.17□□□□□ -1.42
SF3B1-208ENST00000470268 TNS2Q63HR2 1409 aa6.17□□□□□ -1.42
SF3B1-208ENST00000470268 PCDH11XQ9BZA7 1347 aa6.17□□□□□ -1.42
SF3B1-208ENST00000470268 PCDH11YQ9BZA8 1340 aa6.17□□□□□ -1.42
SF3B1-208ENST00000470268 SHANK3Q9BYB0 1731 aa6.17□□□□□ -1.42
SF3B1-208ENST00000470268 NR5A1Q13285 461 aa6.16□□□□□ -1.42
SF3B1-208ENST00000470268 FAM182BQ5T319 152 aa6.16□□□□□ -1.42
SF3B1-208ENST00000470268 NGEFQ8N5V2 710 aa6.16□□□□□ -1.42
SF3B1-208ENST00000470268 NFATC2IPQ8NCF5 419 aa6.16□□□□□ -1.42
SF3B1-208ENST00000470268 PBXIP1Q96AQ6 731 aa6.16□□□□□ -1.42
SF3B1-208ENST00000470268 CDCA7Q9BWT1 371 aaPredicted RBP6.16□□□□□ -1.42
SF3B1-208ENST00000470268 PARP4Q9UKK3 1724 aaKnown RBP6.16□□□□□ -1.42
SF3B1-208ENST00000470268 LRRC37A3O60309 1634 aa6.16□□□□□ -1.42
SF3B1-208ENST00000470268 THSD7AQ9UPZ6 1657 aa6.16□□□□□ -1.42
SF3B1-208ENST00000470268 RNMTO43148 476 aaKnown RBP6.16□□□□□ -1.42
SF3B1-208ENST00000470268 HTATSF1O43719 755 aaKnown RBP6.16□□□□□ -1.42
SF3B1-208ENST00000470268 C1orf141Q5JVX7 400 aa6.16□□□□□ -1.42
SF3B1-208ENST00000470268 WDR63Q8IWG1 891 aa6.16□□□□□ -1.42
SF3B1-208ENST00000470268 SEPT12Q8IYM1 358 aa6.16□□□□□ -1.42
SF3B1-208ENST00000470268 TFIP11Q9UBB9 837 aaKnown RBP6.16□□□□□ -1.42
SF3B1-208ENST00000470268 WNK3Q9BYP7 1800 aa6.15□□□□□ -1.42
SF3B1-208ENST00000470268 ZNF853P0CG23 659 aa6.15□□□□□ -1.42
SF3B1-208ENST00000470268 RBM6P78332 1123 aaKnown RBP6.15□□□□□ -1.42
SF3B1-208ENST00000470268 SLFN5Q08AF3 891 aa6.15□□□□□ -1.42
SF3B1-208ENST00000470268 LMOD3Q0VAK6 560 aa6.15□□□□□ -1.42
SF3B1-208ENST00000470268 SH3RF1Q7Z6J0 888 aa6.15□□□□□ -1.42
SF3B1-208ENST00000470268 TRMT2AQ8IZ69 625 aaKnown RBP6.15□□□□□ -1.42
SF3B1-208ENST00000470268 RTF1Q92541 710 aaKnown RBP6.15□□□□□ -1.42
SF3B1-208ENST00000470268 TSR2Q969E8 191 aaKnown RBP6.15□□□□□ -1.42
SF3B1-208ENST00000470268 DCAF5Q96JK2 942 aa6.15□□□□□ -1.42
SF3B1-208ENST00000470268 ARHGAP9Q9BRR9 750 aa6.15□□□□□ -1.42
SF3B1-208ENST00000470268 MIS18AQ9NYP9 233 aa6.15□□□□□ -1.42
SF3B1-208ENST00000470268 DLG5Q8TDM6 1919 aa6.15□□□□□ -1.43
SF3B1-208ENST00000470268 ATP9BO43861 1147 aa6.15□□□□□ -1.43
SF3B1-208ENST00000470268 UPP2O95045 317 aa6.15□□□□□ -1.43
SF3B1-208ENST00000470268 DUSP27Q5VZP5 1158 aa6.15□□□□□ -1.43
SF3B1-208ENST00000470268 ADAM32Q8TC27 787 aa6.15□□□□□ -1.43
SF3B1-208ENST00000470268 MAFBQ9Y5Q3 323 aaPredicted RBP6.15□□□□□ -1.43
SF3B1-208ENST00000470268 ADAMTS7Q9UKP4 1686 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 EP400Q96L91 3159 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 LOC100996750A0A140TA64 210 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 CHL1O00533 1208 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 KCNQ3O43525 872 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 MAN1A2O60476 641 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 RXRBP28702 533 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 ZBTB33Q86T24 672 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 BPHLQ86WA6 291 aaPredicted RBP6.14□□□□□ -1.43
SF3B1-208ENST00000470268 KRTAP4-6Q9BYQ5 205 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 MBIPQ9NS73 344 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 CEP126Q9P2H0 1117 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 LAS1LQ9Y4W2 734 aaKnown RBP6.14□□□□□ -1.43
SF3B1-208ENST00000470268 IL16Q14005 1332 aa6.14□□□□□ -1.43
SF3B1-208ENST00000470268 RGS12O14924 1447 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 E9PSI1 815 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 KCNQ2O43526 872 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 ZIC2O95409 532 aaPredicted RBP6.13□□□□□ -1.43
SF3B1-208ENST00000470268 HSP90AB1P08238 724 aaKnown RBP6.13□□□□□ -1.43
SF3B1-208ENST00000470268 PDIA4P13667 645 aaKnown RBP6.13□□□□□ -1.43
SF3B1-208ENST00000470268 LMOD1P29536 600 aaPredicted RBP6.13□□□□□ -1.43
SF3B1-208ENST00000470268 KCNMA1Q12791 1236 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 PDE3BQ13370 1112 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 KRT24Q2M2I5 525 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 TBC1D9Q6ZT07 1266 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 PTF1AQ7RTS3 328 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 SLC52A2Q9HAB3 445 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 IFT57Q9NWB7 429 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 FANCIQ9NVI1 1328 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 MRC1P22897 1456 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 TEFQ10587 303 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 SLC39A6Q13433 755 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 TAF7Q15545 349 aaPredicted RBP6.13□□□□□ -1.43
SF3B1-208ENST00000470268 ACSBG1Q96GR2 724 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 PCDHB9Q9Y5E1 797 aa6.13□□□□□ -1.43
SF3B1-208ENST00000470268 TOGARAM1Q9Y4F4 1720 aa6.12□□□□□ -1.43
SF3B1-208ENST00000470268 ERVV-2B6SEH9 535 aa6.12□□□□□ -1.43
SF3B1-208ENST00000470268 RFX1P22670 979 aa6.12□□□□□ -1.43
SF3B1-208ENST00000470268 CABP4P57796 275 aa6.12□□□□□ -1.43
SF3B1-208ENST00000470268 GNAI1P63096 354 aa6.12□□□□□ -1.43
SF3B1-208ENST00000470268 KRT27Q7Z3Y8 459 aa6.12□□□□□ -1.43
SF3B1-208ENST00000470268 TSPYL6Q8N831 410 aa6.12□□□□□ -1.43
SF3B1-208ENST00000470268 PIGBQ92521 554 aa6.12□□□□□ -1.43
SF3B1-208ENST00000470268 TSPYL4Q9UJ04 414 aa6.12□□□□□ -1.43
SF3B1-208ENST00000470268 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-208ENST00000470268 BTBD11A6QL63 1104 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 PPFIA3O75145 1194 aa6.11□□□□□ -1.43
SF3B1-208ENST00000470268 CALD1Q05682 793 aaKnown RBP6.11□□□□□ -1.43
SF3B1-208ENST00000470268 EXOSC9Q06265 439 aaKnown RBP6.11□□□□□ -1.43
SF3B1-208ENST00000470268 PDE4CQ08493 712 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms