RNA–Protein interactions for RNA: ENST00000469694.5

GPC1-208, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 2,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-208ENST00000469694 TERF2Q15554 542 aa16.39■□□□□ 0.21
GPC1-208ENST00000469694 EYA2O00167 538 aa16.38■□□□□ 0.21
GPC1-208ENST00000469694 NMIQ13287 307 aaPredicted RBP16.38■□□□□ 0.21
GPC1-208ENST00000469694 RASEFQ8IZ41 740 aa16.38■□□□□ 0.21
GPC1-208ENST00000469694 BCL11BQ9C0K0 894 aaPredicted RBP16.38■□□□□ 0.21
GPC1-208ENST00000469694 GREM2Q9H772 168 aa16.38■□□□□ 0.21
GPC1-208ENST00000469694 A0A0D9SFI3 127 aa16.38■□□□□ 0.21
GPC1-208ENST00000469694 VGLL3A8MV65 326 aa16.38■□□□□ 0.21
GPC1-208ENST00000469694 IRX5P78411 483 aaPredicted RBP16.38■□□□□ 0.21
GPC1-208ENST00000469694 SLFNL1Q499Z3 407 aa16.38■□□□□ 0.21
GPC1-208ENST00000469694 HSPA1LP34931 641 aa16.37■□□□□ 0.21
GPC1-208ENST00000469694 DDX46Q7L014 1031 aaKnown RBP16.37■□□□□ 0.21
GPC1-208ENST00000469694 FNBP4Q8N3X1 1017 aaPredicted RBP16.37■□□□□ 0.21
GPC1-208ENST00000469694 KIF18AQ8NI77 898 aa16.37■□□□□ 0.21
GPC1-208ENST00000469694 RAD50Q92878 1312 aa16.37■□□□□ 0.21
GPC1-208ENST00000469694 CCDC66A2RUB6 948 aa16.37■□□□□ 0.21
GPC1-208ENST00000469694 ZSCAN22P10073 491 aaPredicted RBP16.37■□□□□ 0.21
GPC1-208ENST00000469694 PTGS1P23219 599 aa16.37■□□□□ 0.21
GPC1-208ENST00000469694 KCNJ4P48050 445 aa16.37■□□□□ 0.21
GPC1-208ENST00000469694 IRS4O14654 1257 aaPredicted RBP16.36■□□□□ 0.21
GPC1-208ENST00000469694 HSPA4P34932 840 aa16.36■□□□□ 0.21
GPC1-208ENST00000469694 CPA1P15085 419 aa16.36■□□□□ 0.21
GPC1-208ENST00000469694 IL15P40933 162 aaPredicted RBP16.36■□□□□ 0.21
GPC1-208ENST00000469694 TAF7LQ5H9L4 462 aa16.36■□□□□ 0.21
GPC1-208ENST00000469694 TTLL11Q8NHH1 800 aa16.36■□□□□ 0.21
GPC1-208ENST00000469694 NWD2Q9ULI1 1742 aa16.36■□□□□ 0.21
GPC1-208ENST00000469694 A0A1B0GUL7 405 aa16.36■□□□□ 0.21
GPC1-208ENST00000469694 ATP5JP18859 108 aa16.36■□□□□ 0.21
GPC1-208ENST00000469694 CDK11BP21127 795 aaKnown RBP16.36■□□□□ 0.21
GPC1-208ENST00000469694 IFIT5Q13325 482 aaKnown RBP16.36■□□□□ 0.21
GPC1-208ENST00000469694 NAA30Q147X3 362 aaPredicted RBP16.36■□□□□ 0.21
GPC1-208ENST00000469694 PAXBP1Q9Y5B6 917 aa16.36■□□□□ 0.21
GPC1-208ENST00000469694 MEX3CQ5U5Q3 659 aaKnown RBP16.35■□□□□ 0.21
GPC1-208ENST00000469694 CERKQ8TCT0 537 aa16.35■□□□□ 0.21
GPC1-208ENST00000469694 ITGA6P23229 1130 aa16.35■□□□□ 0.21
GPC1-208ENST00000469694 SUSD4Q5VX71 490 aa16.35■□□□□ 0.21
GPC1-208ENST00000469694 ZNF589Q86UQ0 364 aaPredicted RBP16.35■□□□□ 0.21
GPC1-208ENST00000469694 C16orf45Q96MC5 204 aaPredicted RBP16.35■□□□□ 0.21
GPC1-208ENST00000469694 CSF1RP07333 972 aa16.34■□□□□ 0.21
GPC1-208ENST00000469694 TNNT1P13805 278 aa16.34■□□□□ 0.21
GPC1-208ENST00000469694 ADORA1P30542 326 aa16.34■□□□□ 0.21
GPC1-208ENST00000469694 HSP90AB3PQ58FF7 597 aa16.34■□□□□ 0.21
GPC1-208ENST00000469694 LINC00116Q8NCU8 138 aa16.34■□□□□ 0.21
GPC1-208ENST00000469694 SEC62Q99442 399 aaKnown RBP16.34■□□□□ 0.21
GPC1-208ENST00000469694 SNX14Q9Y5W7 946 aa16.34■□□□□ 0.21
GPC1-208ENST00000469694 COL9A3Q14050 684 aaPredicted RBP16.34■□□□□ 0.21
GPC1-208ENST00000469694 PRPF40BQ6NWY9 871 aaKnown RBP16.34■□□□□ 0.21
GPC1-208ENST00000469694 ZNF34Q8IZ26 560 aa16.34■□□□□ 0.21
GPC1-208ENST00000469694 KRT222Q8N1A0 295 aa16.34■□□□□ 0.21
GPC1-208ENST00000469694 ERVV-1B6SEH8 477 aa16.33■□□□□ 0.21
GPC1-208ENST00000469694 FIBPO43427 364 aa16.33■□□□□ 0.21
GPC1-208ENST00000469694 CTSWP56202 376 aa16.33■□□□□ 0.21
GPC1-208ENST00000469694 CCDC112Q8NEF3 446 aa16.33■□□□□ 0.21
GPC1-208ENST00000469694 CEP126Q9P2H0 1117 aa16.33■□□□□ 0.21
GPC1-208ENST00000469694 MYH14Q7Z406 1995 aaKnown RBP16.33■□□□□ 0.2
GPC1-208ENST00000469694 GOLIM4O00461 696 aa16.33■□□□□ 0.2
GPC1-208ENST00000469694 STX6O43752 255 aa16.33■□□□□ 0.2
GPC1-208ENST00000469694 CAMTA2O94983 1202 aa16.33■□□□□ 0.2
GPC1-208ENST00000469694 CCDC192P0DO97 292 aa16.33■□□□□ 0.2
GPC1-208ENST00000469694 RUFY2Q8WXA3 655 aa16.33■□□□□ 0.2
GPC1-208ENST00000469694 TIGD1Q96MW7 591 aa16.33■□□□□ 0.2
GPC1-208ENST00000469694 CCDC129Q6ZRS4 1044 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 CCDC186Q7Z3E2 898 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 SNRKQ9NRH2 765 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 F13A1P00488 732 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 SYT1P21579 422 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 SLC20A2Q08357 652 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 ADCK5Q3MIX3 580 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 LDHAL6AQ6ZMR3 332 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 PLA2G12BQ9BX93 195 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 FAM53CQ9NYF3 392 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 ATP6V1DQ9Y5K8 247 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 TAF6LQ9Y6J9 622 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 LRMPQ12912 555 aa16.32■□□□□ 0.2
GPC1-208ENST00000469694 AEBP2Q6ZN18 517 aaPredicted RBP16.31■□□□□ 0.2
GPC1-208ENST00000469694 FAM200AQ8TCP9 573 aa16.31■□□□□ 0.2
GPC1-208ENST00000469694 HAUS7Q99871 368 aa16.31■□□□□ 0.2
GPC1-208ENST00000469694 NIP7Q9Y221 180 aaKnown RBP eCLIP16.31■□□□□ 0.2
GPC1-208ENST00000469694 CIAO1O76071 339 aa16.31■□□□□ 0.2
GPC1-208ENST00000469694 PI16Q6UXB8 463 aa16.31■□□□□ 0.2
GPC1-208ENST00000469694 HELBQ8NG08 1087 aaPredicted RBP16.31■□□□□ 0.2
GPC1-208ENST00000469694 CCDC171Q6TFL3 1326 aa16.31■□□□□ 0.2
GPC1-208ENST00000469694 CDHR2Q9BYE9 1310 aa16.31■□□□□ 0.2
GPC1-208ENST00000469694 SNAP23O00161 211 aa16.3■□□□□ 0.2
GPC1-208ENST00000469694 BICDL1Q6ZP65 573 aa16.3■□□□□ 0.2
GPC1-208ENST00000469694 SMARCC1Q92922 1105 aaPredicted RBP16.3■□□□□ 0.2
GPC1-208ENST00000469694 SPATA31A6Q5VVP1 1343 aa16.3■□□□□ 0.2
GPC1-208ENST00000469694 ZNF609O15014 1411 aa16.3■□□□□ 0.2
GPC1-208ENST00000469694 NUP98P52948 1817 aa16.3■□□□□ 0.2
GPC1-208ENST00000469694 CNNM1Q9NRU3 951 aa16.3■□□□□ 0.2
GPC1-208ENST00000469694 RBM8AQ9Y5S9 174 aaKnown RBP16.3■□□□□ 0.2
GPC1-208ENST00000469694 AFF2P51816 1311 aa16.3■□□□□ 0.2
GPC1-208ENST00000469694 FKBP4Q02790 459 aaKnown RBP eCLIP16.29■□□□□ 0.2
GPC1-208ENST00000469694 SCARF1Q14162 830 aa16.29■□□□□ 0.2
GPC1-208ENST00000469694 KMT5BQ4FZB7 885 aa16.29■□□□□ 0.2
GPC1-208ENST00000469694 METTL24Q5JXM2 366 aa16.29■□□□□ 0.2
GPC1-208ENST00000469694 ZNF397Q8NF99 534 aaPredicted RBP16.29■□□□□ 0.2
GPC1-208ENST00000469694 XAGE2Q96GT9 111 aa16.29■□□□□ 0.2
GPC1-208ENST00000469694 SEC31BQ9NQW1 1179 aa16.29■□□□□ 0.2
GPC1-208ENST00000469694 EPB41L2O43491 1005 aaKnown RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms