RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 SCN11AQ9UI33 1791 aa21.02■□□□□ 0.96
MCF2L-221ENST00000469415 CTDNEP1O95476 244 aa21.02■□□□□ 0.95
MCF2L-221ENST00000469415 ANO6Q4KMQ2 910 aa21.02■□□□□ 0.95
MCF2L-221ENST00000469415 FAM13BQ9NYF5 915 aa21.02■□□□□ 0.95
MCF2L-221ENST00000469415 ALS2Q96Q42 1657 aa21.01■□□□□ 0.95
MCF2L-221ENST00000469415 STARD3NLO95772 234 aa21.01■□□□□ 0.95
MCF2L-221ENST00000469415 ATP2B3Q16720 1220 aa21.01■□□□□ 0.95
MCF2L-221ENST00000469415 TSC1Q92574 1164 aa21.01■□□□□ 0.95
MCF2L-221ENST00000469415 FGAP02671 866 aa21.01■□□□□ 0.95
MCF2L-221ENST00000469415 TYRO3Q06418 890 aa21.01■□□□□ 0.95
MCF2L-221ENST00000469415 NSUN7Q8NE18 718 aaKnown RBP21.01■□□□□ 0.95
MCF2L-221ENST00000469415 DNAJC25Q9H1X3 360 aa21.01■□□□□ 0.95
MCF2L-221ENST00000469415 IQSEC3Q9UPP2 1182 aaPredicted RBP21.01■□□□□ 0.95
MCF2L-221ENST00000469415 SLC4A9Q96Q91 983 aa21■□□□□ 0.95
MCF2L-221ENST00000469415 SCAND2PQ9GZW5 306 aaPredicted RBP21■□□□□ 0.95
MCF2L-221ENST00000469415 PDZRN4Q6ZMN7 1036 aaPredicted RBP21■□□□□ 0.95
MCF2L-221ENST00000469415 ISCA1Q9BUE6 129 aa21■□□□□ 0.95
MCF2L-221ENST00000469415 SIPA1L3O60292 1781 aaPredicted RBP21■□□□□ 0.95
MCF2L-221ENST00000469415 CPDO75976 1380 aa21■□□□□ 0.95
MCF2L-221ENST00000469415 HELLSQ9NRZ9 838 aa20.99■□□□□ 0.95
MCF2L-221ENST00000469415 STRCP1A6NGW2 1772 aa20.99■□□□□ 0.95
MCF2L-221ENST00000469415 IRS4O14654 1257 aaPredicted RBP20.99■□□□□ 0.95
MCF2L-221ENST00000469415 TSGA10IPQ3SY00 556 aa20.99■□□□□ 0.95
MCF2L-221ENST00000469415 SLC9C2Q5TAH2 1124 aa20.99■□□□□ 0.95
MCF2L-221ENST00000469415 LETM1O95202 739 aaPredicted RBP20.99■□□□□ 0.95
MCF2L-221ENST00000469415 ME1P48163 572 aa20.98■□□□□ 0.95
MCF2L-221ENST00000469415 KCNQ4P56696 695 aa20.98■□□□□ 0.95
MCF2L-221ENST00000469415 KIAA2012Q0VF49 1180 aa20.98■□□□□ 0.95
MCF2L-221ENST00000469415 RESTQ13127 1097 aa20.98■□□□□ 0.95
MCF2L-221ENST00000469415 NKX2-3Q8TAU0 364 aa20.98■□□□□ 0.95
MCF2L-221ENST00000469415 USP28Q96RU2 1077 aa20.98■□□□□ 0.95
MCF2L-221ENST00000469415 COL5A2P05997 1499 aaPredicted RBP20.98■□□□□ 0.95
MCF2L-221ENST00000469415 PDIA3P30101 505 aaKnown RBP20.98■□□□□ 0.95
MCF2L-221ENST00000469415 SMIM5Q71RC9 77 aa20.98■□□□□ 0.95
MCF2L-221ENST00000469415 SH3TC1Q8TE82 1336 aa20.98■□□□□ 0.95
MCF2L-221ENST00000469415 KLF18A0A0U1RQI7 1052 aa20.97■□□□□ 0.95
MCF2L-221ENST00000469415 MCAMP43121 646 aa20.97■□□□□ 0.95
MCF2L-221ENST00000469415 FUCA2Q9BTY2 467 aa20.97■□□□□ 0.95
MCF2L-221ENST00000469415 MRVI1Q9Y6F6 885 aa20.97■□□□□ 0.95
MCF2L-221ENST00000469415 KIF1AQ12756 1690 aa20.97■□□□□ 0.95
MCF2L-221ENST00000469415 GPAA1O43292 621 aa20.97■□□□□ 0.95
MCF2L-221ENST00000469415 TOMM22Q9NS69 142 aa20.97■□□□□ 0.95
MCF2L-221ENST00000469415 AFDNP55196 1824 aaKnown RBP20.97■□□□□ 0.95
MCF2L-221ENST00000469415 SOS2Q07890 1332 aaPredicted RBP20.97■□□□□ 0.95
MCF2L-221ENST00000469415 HSP90AA2PQ14568 343 aaPredicted RBP20.96■□□□□ 0.95
MCF2L-221ENST00000469415 GOLGA8BA8MQT2 603 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 PRC1O43663 620 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 PHKA1P46020 1223 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 HS1BP3Q53T59 392 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 SASS6Q6UVJ0 657 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 RALYLQ86SE5 291 aaKnown RBP20.96■□□□□ 0.95
MCF2L-221ENST00000469415 NLRP10Q86W26 655 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 TTLL11Q8NHH1 800 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 DSCC1Q9BVC3 393 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 UQCRHLA0A096LP55 91 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 PFKFB2O60825 505 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 UQCRHP07919 91 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 IMMTQ16891 758 aaKnown RBP20.96■□□□□ 0.95
MCF2L-221ENST00000469415 ZBTB38Q8NAP3 1195 aaPredicted RBP20.96■□□□□ 0.95
MCF2L-221ENST00000469415 AIFM3Q96NN9 605 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 MYL10Q9BUA6 226 aa20.96■□□□□ 0.95
MCF2L-221ENST00000469415 CPLX1O14810 134 aa20.95■□□□□ 0.94
MCF2L-221ENST00000469415 CCDC82Q8N4S0 544 aa20.95■□□□□ 0.94
MCF2L-221ENST00000469415 TRIM5Q9C035 493 aa20.95■□□□□ 0.94
MCF2L-221ENST00000469415 AKAP2Q9Y2D5 859 aa20.95■□□□□ 0.94
MCF2L-221ENST00000469415 NUTM2BA6NNL0 878 aaPredicted RBP20.95■□□□□ 0.94
MCF2L-221ENST00000469415 NUTM2EB1AL46 878 aaPredicted RBP20.95■□□□□ 0.94
MCF2L-221ENST00000469415 DZIP3Q86Y13 1208 aaKnown RBP20.95■□□□□ 0.94
MCF2L-221ENST00000469415 NUTM2AQ8IVF1 878 aaPredicted RBP20.95■□□□□ 0.94
MCF2L-221ENST00000469415 CCAR1Q8IX12 1150 aaKnown RBP20.95■□□□□ 0.94
MCF2L-221ENST00000469415 CBX8Q9HC52 389 aa20.95■□□□□ 0.94
MCF2L-221ENST00000469415 COL18A1P39060 1754 aa20.94■□□□□ 0.94
MCF2L-221ENST00000469415 ZNF500O60304 480 aaPredicted RBP20.94■□□□□ 0.94
MCF2L-221ENST00000469415 NKX1-1Q15270 411 aaPredicted RBP20.94■□□□□ 0.94
MCF2L-221ENST00000469415 GIGYF2Q6Y7W6 1299 aaKnown RBP20.94■□□□□ 0.94
MCF2L-221ENST00000469415 NRBP1Q9UHY1 535 aa20.94■□□□□ 0.94
MCF2L-221ENST00000469415 ANKRD18BA2A2Z9 1011 aa20.94■□□□□ 0.94
MCF2L-221ENST00000469415 ZNF213O14771 459 aa20.94■□□□□ 0.94
MCF2L-221ENST00000469415 FOXP2O15409 715 aa20.94■□□□□ 0.94
MCF2L-221ENST00000469415 PCCAP05165 728 aaPredicted RBP20.94■□□□□ 0.94
MCF2L-221ENST00000469415 EXOSC10Q01780 885 aaKnown RBP20.94■□□□□ 0.94
MCF2L-221ENST00000469415 SEC31BQ9NQW1 1179 aa20.94■□□□□ 0.94
MCF2L-221ENST00000469415 MAP3K15Q6ZN16 1313 aa20.93■□□□□ 0.94
MCF2L-221ENST00000469415 CRYBG1Q9Y4K1 1723 aa20.93■□□□□ 0.94
MCF2L-221ENST00000469415 EXOC5O00471 708 aa20.93■□□□□ 0.94
MCF2L-221ENST00000469415 RRP12Q5JTH9 1297 aaKnown RBP20.93■□□□□ 0.94
MCF2L-221ENST00000469415 ISM2Q6H9L7 571 aa20.93■□□□□ 0.94
MCF2L-221ENST00000469415 PIH1D3Q9NQM4 214 aaKnown RBP20.93■□□□□ 0.94
MCF2L-221ENST00000469415 HMGB1P09429 215 aaKnown RBP20.93■□□□□ 0.94
MCF2L-221ENST00000469415 PTGS1P23219 599 aa20.93■□□□□ 0.94
MCF2L-221ENST00000469415 ZNF165P49910 485 aa20.93■□□□□ 0.94
MCF2L-221ENST00000469415 SF3A1Q15459 793 aaKnown RBP20.93■□□□□ 0.94
MCF2L-221ENST00000469415 SENP2Q9HC62 589 aa20.93■□□□□ 0.94
MCF2L-221ENST00000469415 UVSSAQ2YD98 709 aa20.92■□□□□ 0.94
MCF2L-221ENST00000469415 GLIPR1L2Q4G1C9 344 aa20.92■□□□□ 0.94
MCF2L-221ENST00000469415 GOLPH3LQ9H4A5 285 aa20.92■□□□□ 0.94
MCF2L-221ENST00000469415 PYCARDQ9ULZ3 195 aa20.92■□□□□ 0.94
MCF2L-221ENST00000469415 A0A1B0GVL5 298 aa20.92■□□□□ 0.94
MCF2L-221ENST00000469415 FAM200AQ8TCP9 573 aa20.92■□□□□ 0.94
MCF2L-221ENST00000469415 GPR108Q9NPR9 543 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms