RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 CLEC4GQ6UXB4 293 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 VSIG10Q8N0Z9 540 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 TMC1Q8TDI8 760 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 TIFAQ96CG3 184 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 IRF2BPLQ9H1B7 796 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 TERF2IPQ9NYB0 399 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 ATP6V0A2Q9Y487 856 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 CEP290O15078 2479 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 FLT4P35916 1363 aa3.72□□□□□ -1.81
USP40-211ENST00000464956 COL5A3P25940 1745 aaPredicted RBP3.72□□□□□ -1.81
USP40-211ENST00000464956 FAM177BA6PVY3 158 aa3.71□□□□□ -1.82
USP40-211ENST00000464956 ERC2O15083 957 aa3.71□□□□□ -1.82
USP40-211ENST00000464956 PPP1R12BO60237 982 aaPredicted RBP3.71□□□□□ -1.82
USP40-211ENST00000464956 ADCY3O60266 1144 aa3.71□□□□□ -1.82
USP40-211ENST00000464956 ZNF280AP59817 542 aaPredicted RBP3.71□□□□□ -1.82
USP40-211ENST00000464956 C1orf141Q5JVX7 400 aa3.71□□□□□ -1.82
USP40-211ENST00000464956 C9orf50Q5SZB4 431 aa3.71□□□□□ -1.82
USP40-211ENST00000464956 HERVK_113Q902F9 699 aa3.71□□□□□ -1.82
USP40-211ENST00000464956 ZNF496Q96IT1 587 aaPredicted RBP3.71□□□□□ -1.82
USP40-211ENST00000464956 RNPC3Q96LT9 517 aaKnown RBP3.71□□□□□ -1.82
USP40-211ENST00000464956 CRAMP1Q96RY5 1269 aa3.71□□□□□ -1.82
USP40-211ENST00000464956 PRDM12Q9H4Q4 367 aa3.71□□□□□ -1.82
USP40-211ENST00000464956 SH2B1Q9NRF2 756 aaPredicted RBP3.71□□□□□ -1.82
USP40-211ENST00000464956 SCAF8Q9UPN6 1271 aaKnown RBP3.71□□□□□ -1.82
USP40-211ENST00000464956 NIP7Q9Y221 180 aaKnown RBP eCLIP3.71□□□□□ -1.82
USP40-211ENST00000464956 AFDNP55196 1824 aaKnown RBP3.71□□□□□ -1.82
USP40-211ENST00000464956 LTN1O94822 1766 aa3.71□□□□□ -1.82
USP40-211ENST00000464956 ITGB4P16144 1822 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 CCL15-CCL14A0A0B4J2E2 113 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.7□□□□□ -1.82
USP40-211ENST00000464956 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.7□□□□□ -1.82
USP40-211ENST00000464956 TLL1O43897 1013 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 U2AF1L5P0DN76 240 aaPredicted RBP3.7□□□□□ -1.82
USP40-211ENST00000464956 SSTR3P32745 418 aaPredicted RBP3.7□□□□□ -1.82
USP40-211ENST00000464956 IL6STP40189 918 aaPredicted RBP3.7□□□□□ -1.82
USP40-211ENST00000464956 GTF2A2P52657 109 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 FCGRTP55899 365 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 U2AF1Q01081 240 aaKnown RBP eCLIP3.7□□□□□ -1.82
USP40-211ENST00000464956 PRKCZQ05513 592 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 CCL15Q16663 113 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 PLEKHO1Q53GL0 409 aaPredicted RBP3.7□□□□□ -1.82
USP40-211ENST00000464956 ZNF530Q6P9A1 599 aaPredicted RBP3.7□□□□□ -1.82
USP40-211ENST00000464956 SLC51AQ86UW1 340 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 DZIP3Q86Y13 1208 aaKnown RBP3.7□□□□□ -1.82
USP40-211ENST00000464956 MICALL1Q8N3F8 863 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 AGBL3Q8NEM8 1001 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 PRSS33Q8NF86 280 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 PXYLP1Q8TE99 480 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 CLMNQ96JQ2 1002 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 NYXQ9GZU5 481 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.7□□□□□ -1.82
USP40-211ENST00000464956 ZCCHC17Q9NP64 241 aaKnown RBP3.7□□□□□ -1.82
USP40-211ENST00000464956 MYOZ2Q9NPC6 264 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 RALYQ9UKM9 306 aaKnown RBP3.7□□□□□ -1.82
USP40-211ENST00000464956 COG5Q9UP83 839 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 ATRNL1Q5VV63 1379 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 SSC5DA1L4H1 1573 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 CENPFP49454 3210 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 PFASO15067 1338 aa3.7□□□□□ -1.82
USP40-211ENST00000464956 ANKRD31Q8N7Z5 1873 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 BAHCC1Q9P281 2608 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 SOBPA7XYQ1 873 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 DCXO43602 365 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 VIL1P09327 827 aaKnown RBP3.69□□□□□ -1.82
USP40-211ENST00000464956 USP17L8P0C7I0 530 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 ELNP15502 786 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 GJA5P36382 358 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 IREB2P48200 963 aaKnown RBP3.69□□□□□ -1.82
USP40-211ENST00000464956 PKN1Q16512 942 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 LRRC26Q2I0M4 334 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 WASHC4Q2M389 1173 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 AMOTQ4VCS5 1084 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 HFE2Q6ZVN8 426 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 RIC3Q7Z5B4 369 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 APOBEC3FQ8IUX4 373 aaKnown RBP3.69□□□□□ -1.82
USP40-211ENST00000464956 ANKRD13AQ8IZ07 590 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 GJD3Q8N144 294 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 FAM43AQ8N2R8 423 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 BRI3BPQ8WY22 251 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 ATOH1Q92858 354 aaPredicted RBP3.69□□□□□ -1.82
USP40-211ENST00000464956 OPTNQ96CV9 577 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 MS4A4AQ96JQ5 239 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 TEX13AQ9BXU3 409 aaPredicted RBP3.69□□□□□ -1.82
USP40-211ENST00000464956 DBNDD1Q9H9R9 158 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 FAM86C1Q9NVL1 165 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 TRPC6Q9Y210 931 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 ANKRD26Q9UPS8 1709 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 CACNA1BQ00975 2339 aa3.69□□□□□ -1.82
USP40-211ENST00000464956 KDM3BQ7LBC6 1761 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 ARFGEF2Q9Y6D5 1785 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 SOWAHBA6NEL2 793 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 G3V3G9 751 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 ECE2O60344 883 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 BBOX1O75936 387 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 HOXB3P14651 431 aaPredicted RBP3.68□□□□□ -1.82
USP40-211ENST00000464956 TNNT2P45379 298 aaPredicted RBP3.68□□□□□ -1.82
USP40-211ENST00000464956 FLT3LGP49771 235 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 ADGRE1Q14246 886 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 DCAF8Q5TAQ9 597 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 LURAP1LQ8IV03 231 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms