RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 TMC6Q7Z403 805 aa12.12□□□□□ -0.47
PTPRE-205ENST00000463727 C19orf44Q9H6X5 657 aa12.12□□□□□ -0.47
PTPRE-205ENST00000463727 EYA2O00167 538 aa12.12□□□□□ -0.47
PTPRE-205ENST00000463727 CBFA2T2O43439 604 aa12.12□□□□□ -0.47
PTPRE-205ENST00000463727 PRC1O43663 620 aa12.12□□□□□ -0.47
PTPRE-205ENST00000463727 TOB2Q14106 344 aaPredicted RBP12.12□□□□□ -0.47
PTPRE-205ENST00000463727 BCL2L12Q9HB09 334 aa12.12□□□□□ -0.47
PTPRE-205ENST00000463727 CGNQ9P2M7 1197 aaKnown RBP12.12□□□□□ -0.47
PTPRE-205ENST00000463727 A0A1B0GVL5 298 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 CCDC69A6NI79 296 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 PTPN12Q05209 780 aaKnown RBP12.11□□□□□ -0.47
PTPRE-205ENST00000463727 ISM2Q6H9L7 571 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 LDHAL6AQ6ZMR3 332 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 TRIM22Q8IYM9 498 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.11□□□□□ -0.47
PTPRE-205ENST00000463727 SPTLC2O15270 562 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 SCRN1Q12765 414 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 EPHA10Q5JZY3 1008 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 AIDAQ96BJ3 306 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 SLIT1O75093 1534 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 PFKFB2O60825 505 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 ZNF594Q96JF6 807 aaPredicted RBP12.11□□□□□ -0.47
PTPRE-205ENST00000463727 DSCC1Q9BVC3 393 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 DLG5Q8TDM6 1919 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 ARHGAP23Q9P227 1491 aa12.11□□□□□ -0.47
PTPRE-205ENST00000463727 USP28Q96RU2 1077 aa12.1□□□□□ -0.47
PTPRE-205ENST00000463727 E7EWF7 191 aa12.1□□□□□ -0.47
PTPRE-205ENST00000463727 ZCRB1Q8TBF4 217 aaKnown RBP12.1□□□□□ -0.47
PTPRE-205ENST00000463727 STARD3NLO95772 234 aa12.1□□□□□ -0.47
PTPRE-205ENST00000463727 NRBP1Q9UHY1 535 aa12.1□□□□□ -0.47
PTPRE-205ENST00000463727 TPM1P09493 284 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 METAP2P50579 478 aaKnown RBP eCLIP12.09□□□□□ -0.47
PTPRE-205ENST00000463727 SNW1Q13573 536 aaKnown RBP12.09□□□□□ -0.47
PTPRE-205ENST00000463727 MICU3Q86XE3 530 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 FAM177A1Q8N128 213 aaPredicted RBP12.09□□□□□ -0.47
PTPRE-205ENST00000463727 STK11IPQ8N1F8 1099 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 TDRD7Q8NHU6 1098 aaKnown RBP12.09□□□□□ -0.47
PTPRE-205ENST00000463727 TMOD3Q9NYL9 352 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 NCAPD2Q15021 1401 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 ADGRL3Q9HAR2 1447 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 OTUD7BQ6GQQ9 843 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 RASSF8Q8NHQ8 419 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 NACAP1Q9BZK3 213 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 ERBB3P21860 1342 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 A1BGP04217 495 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 XBP1P17861 261 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 GPTP24298 496 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 MARCKSP29966 332 aaPredicted RBP12.09□□□□□ -0.47
PTPRE-205ENST00000463727 SYKP43405 635 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 HSP90AB3PQ58FF7 597 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 SMAP1Q8IYB5 467 aaPredicted RBP12.09□□□□□ -0.47
PTPRE-205ENST00000463727 AXIN2Q9Y2T1 843 aa12.09□□□□□ -0.47
PTPRE-205ENST00000463727 HSPD1P10809 573 aaKnown RBP12.08□□□□□ -0.47
PTPRE-205ENST00000463727 IARSP41252 1262 aaKnown RBP12.08□□□□□ -0.47
PTPRE-205ENST00000463727 RESTQ13127 1097 aa12.08□□□□□ -0.47
PTPRE-205ENST00000463727 ATP2B3Q16720 1220 aa12.08□□□□□ -0.47
PTPRE-205ENST00000463727 CCDC144CPQ8IYA2 1237 aa12.08□□□□□ -0.47
PTPRE-205ENST00000463727 CCDC150Q8NCX0 1101 aa12.08□□□□□ -0.47
PTPRE-205ENST00000463727 ERCC4Q92889 916 aaPredicted RBP12.08□□□□□ -0.47
PTPRE-205ENST00000463727 IL17RAQ96F46 866 aa12.08□□□□□ -0.47
PTPRE-205ENST00000463727 ALG1Q9BT22 464 aa12.08□□□□□ -0.47
PTPRE-205ENST00000463727 DIP2AQ14689 1571 aa12.08□□□□□ -0.48
PTPRE-205ENST00000463727 BRAPQ7Z569 592 aa12.08□□□□□ -0.48
PTPRE-205ENST00000463727 CCDC191Q8NCU4 936 aa12.08□□□□□ -0.48
PTPRE-205ENST00000463727 NAPBQ9H115 298 aa12.08□□□□□ -0.48
PTPRE-205ENST00000463727 GTF2E1P29083 439 aaPredicted RBP12.08□□□□□ -0.48
PTPRE-205ENST00000463727 LMOD1P29536 600 aaPredicted RBP12.08□□□□□ -0.48
PTPRE-205ENST00000463727 CNNM3Q8NE01 707 aa12.08□□□□□ -0.48
PTPRE-205ENST00000463727 NSUN7Q8NE18 718 aaKnown RBP12.08□□□□□ -0.48
PTPRE-205ENST00000463727 ZNF274Q96GC6 653 aaPredicted RBP12.08□□□□□ -0.48
PTPRE-205ENST00000463727 MPHOSPH8Q99549 860 aa12.08□□□□□ -0.48
PTPRE-205ENST00000463727 ZHX1Q9UKY1 873 aaPredicted RBP12.08□□□□□ -0.48
PTPRE-205ENST00000463727 RIMS1Q86UR5 1692 aaKnown RBP12.08□□□□□ -0.48
PTPRE-205ENST00000463727 GOLGA8AA7E2F4 631 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 TDO2P48775 406 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 NUP133Q8WUM0 1156 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 WASF1Q92558 559 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 SPTLC3Q9NUV7 552 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 IFNKQ9P0W0 207 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 ANKRD18BA2A2Z9 1011 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 TOP1P11387 765 aaKnown RBP12.07□□□□□ -0.48
PTPRE-205ENST00000463727 SLC9C2Q5TAH2 1124 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 TTLL5Q6EMB2 1281 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 CCDC82Q8N4S0 544 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 UBXN4Q92575 508 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 PGBD1Q96JS3 809 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 DACH1Q9UI36 760 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 MON2Q7Z3U7 1717 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 IFIT3O14879 490 aaKnown RBP12.07□□□□□ -0.48
PTPRE-205ENST00000463727 TTF1Q15361 905 aaPredicted RBP12.07□□□□□ -0.48
PTPRE-205ENST00000463727 TSGA10IPQ3SY00 556 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 CADPS2Q86UW7 1296 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 FTOQ9C0B1 505 aaKnown RBP eCLIP12.07□□□□□ -0.48
PTPRE-205ENST00000463727 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.07□□□□□ -0.48
PTPRE-205ENST00000463727 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.07□□□□□ -0.48
PTPRE-205ENST00000463727 RCOR1Q9UKL0 485 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 SLC12A7Q9Y666 1083 aa12.07□□□□□ -0.48
PTPRE-205ENST00000463727 V9GYY5 206 aaPredicted RBP12.07□□□□□ -0.48
PTPRE-205ENST00000463727 PES1O00541 588 aaKnown RBP12.06□□□□□ -0.48
PTPRE-205ENST00000463727 KCNB2Q92953 911 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms