RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 CHRNDQ07001 517 aa17.65■□□□□ 0.42
USP4-206ENST00000461553 GRM1Q13255 1194 aa17.65■□□□□ 0.42
USP4-206ENST00000461553 TAF7LQ5H9L4 462 aa17.65■□□□□ 0.42
USP4-206ENST00000461553 KRT26Q7Z3Y9 468 aa17.65■□□□□ 0.42
USP4-206ENST00000461553 CAPNS2Q96L46 248 aa17.65■□□□□ 0.42
USP4-206ENST00000461553 COA1Q9GZY4 146 aa17.65■□□□□ 0.42
USP4-206ENST00000461553 GGA3Q9NZ52 723 aa17.65■□□□□ 0.42
USP4-206ENST00000461553 PTPRCP08575 1304 aa17.65■□□□□ 0.42
USP4-206ENST00000461553 MYO3BQ8WXR4 1341 aa17.65■□□□□ 0.42
USP4-206ENST00000461553 CCER2I3L3R5 266 aa17.64■□□□□ 0.41
USP4-206ENST00000461553 ZNF280AP59817 542 aaPredicted RBP17.64■□□□□ 0.41
USP4-206ENST00000461553 CCDC57Q2TAC2 916 aa17.64■□□□□ 0.41
USP4-206ENST00000461553 CYP4F22Q6NT55 531 aa17.64■□□□□ 0.41
USP4-206ENST00000461553 LMBR1LQ6UX01 489 aa17.64■□□□□ 0.41
USP4-206ENST00000461553 USP48Q86UV5 1035 aa17.64■□□□□ 0.41
USP4-206ENST00000461553 WTIPA6NIX2 430 aaPredicted RBP17.63■□□□□ 0.41
USP4-206ENST00000461553 FOXN1O15353 648 aa17.63■□□□□ 0.41
USP4-206ENST00000461553 USP17L8P0C7I0 530 aa17.63■□□□□ 0.41
USP4-206ENST00000461553 MAP2K1Q02750 393 aaPredicted RBP17.63■□□□□ 0.41
USP4-206ENST00000461553 SLFN5Q08AF3 891 aa17.63■□□□□ 0.41
USP4-206ENST00000461553 SAPCD2Q86UD0 394 aa17.63■□□□□ 0.41
USP4-206ENST00000461553 SULF1Q8IWU6 871 aa17.63■□□□□ 0.41
USP4-206ENST00000461553 MRPL50Q8N5N7 158 aaKnown RBP17.63■□□□□ 0.41
USP4-206ENST00000461553 PAPPA2Q9BXP8 1791 aa17.62■□□□□ 0.41
USP4-206ENST00000461553 ADM5C9JUS6 153 aa17.62■□□□□ 0.41
USP4-206ENST00000461553 KLRK1P26718 216 aa17.62■□□□□ 0.41
USP4-206ENST00000461553 EPHA10Q5JZY3 1008 aa17.62■□□□□ 0.41
USP4-206ENST00000461553 TNS4Q8IZW8 715 aa17.62■□□□□ 0.41
USP4-206ENST00000461553 HHIPL1Q96JK4 782 aa17.62■□□□□ 0.41
USP4-206ENST00000461553 MYOZ2Q9NPC6 264 aa17.62■□□□□ 0.41
USP4-206ENST00000461553 MYH13Q9UKX3 1938 aa17.62■□□□□ 0.41
USP4-206ENST00000461553 CTCFP49711 727 aaPredicted RBP17.61■□□□□ 0.41
USP4-206ENST00000461553 DACT2Q5SW24 774 aa17.61■□□□□ 0.41
USP4-206ENST00000461553 STRIP1Q5VSL9 837 aa17.61■□□□□ 0.41
USP4-206ENST00000461553 TXNRD3Q86VQ6 643 aa17.61■□□□□ 0.41
USP4-206ENST00000461553 GMLQ99445 158 aa17.61■□□□□ 0.41
USP4-206ENST00000461553 CNNM1Q9NRU3 951 aa17.61■□□□□ 0.41
USP4-206ENST00000461553 WBP1LQ9NX94 342 aa17.61■□□□□ 0.41
USP4-206ENST00000461553 OGFOD1Q8N543 542 aa17.6■□□□□ 0.41
USP4-206ENST00000461553 SSH1Q8WYL5 1049 aa17.6■□□□□ 0.41
USP4-206ENST00000461553 SUCLG2Q96I99 432 aa17.6■□□□□ 0.41
USP4-206ENST00000461553 BEGAINQ9BUH8 593 aa17.6■□□□□ 0.41
USP4-206ENST00000461553 AKAP11Q9UKA4 1901 aa17.6■□□□□ 0.41
USP4-206ENST00000461553 ASTN2O75129 1339 aaPredicted RBP17.59■□□□□ 0.41
USP4-206ENST00000461553 PITPNM2Q9BZ72 1349 aa17.59■□□□□ 0.41
USP4-206ENST00000461553 TAF5LO75529 589 aa17.59■□□□□ 0.41
USP4-206ENST00000461553 HUNKP57058 714 aa17.59■□□□□ 0.41
USP4-206ENST00000461553 SCARF1Q14162 830 aa17.59■□□□□ 0.41
USP4-206ENST00000461553 ALDH1L2Q3SY69 923 aa17.59■□□□□ 0.41
USP4-206ENST00000461553 ANGEL2Q5VTE6 544 aaKnown RBP17.59■□□□□ 0.41
USP4-206ENST00000461553 LDHAL6AQ6ZMR3 332 aa17.59■□□□□ 0.41
USP4-206ENST00000461553 ZNF804AQ7Z570 1209 aa17.59■□□□□ 0.41
USP4-206ENST00000461553 CDCA7LQ96GN5 454 aa17.59■□□□□ 0.41
USP4-206ENST00000461553 ZNF594Q96JF6 807 aaPredicted RBP17.59■□□□□ 0.41
USP4-206ENST00000461553 SMC4Q9NTJ3 1288 aa17.59■□□□□ 0.41
USP4-206ENST00000461553 UTYO14607 1347 aa17.58■□□□□ 0.4
USP4-206ENST00000461553 NBPF7P0C2Y1 421 aaPredicted RBP17.58■□□□□ 0.4
USP4-206ENST00000461553 TTLL5Q6EMB2 1281 aa17.58■□□□□ 0.4
USP4-206ENST00000461553 HELBQ8NG08 1087 aaPredicted RBP17.58■□□□□ 0.4
USP4-206ENST00000461553 MXD3Q9BW11 206 aa17.58■□□□□ 0.4
USP4-206ENST00000461553 GBA2Q9HCG7 927 aaPredicted RBP17.58■□□□□ 0.4
USP4-206ENST00000461553 PRDM10Q9NQV6 1147 aa17.58■□□□□ 0.4
USP4-206ENST00000461553 CT47B1P0C2W7 299 aaPredicted RBP17.57■□□□□ 0.4
USP4-206ENST00000461553 MAP2K2P36507 400 aa17.57■□□□□ 0.4
USP4-206ENST00000461553 GTF2IP78347 998 aa17.57■□□□□ 0.4
USP4-206ENST00000461553 DLK2Q6UY11 383 aa17.57■□□□□ 0.4
USP4-206ENST00000461553 C15orf52Q6ZUT6 534 aaKnown RBP17.57■□□□□ 0.4
USP4-206ENST00000461553 C2orf69Q8N8R5 385 aa17.57■□□□□ 0.4
USP4-206ENST00000461553 CDCA5Q96FF9 252 aa17.57■□□□□ 0.4
USP4-206ENST00000461553 CD209Q9NNX6 404 aa17.57■□□□□ 0.4
USP4-206ENST00000461553 HDAC9Q9UKV0 1011 aa17.57■□□□□ 0.4
USP4-206ENST00000461553 IRS2Q9Y4H2 1338 aa17.56■□□□□ 0.4
USP4-206ENST00000461553 SNAP23O00161 211 aa17.56■□□□□ 0.4
USP4-206ENST00000461553 AOC2O75106 756 aa17.56■□□□□ 0.4
USP4-206ENST00000461553 MMP14P50281 582 aa17.56■□□□□ 0.4
USP4-206ENST00000461553 BICC1Q9H694 974 aaKnown RBP17.56■□□□□ 0.4
USP4-206ENST00000461553 PLIN1O60240 522 aa17.55■□□□□ 0.4
USP4-206ENST00000461553 HSPA8P11142 646 aaKnown RBP17.55■□□□□ 0.4
USP4-206ENST00000461553 LBX1P52954 281 aa17.55■□□□□ 0.4
USP4-206ENST00000461553 RABL6Q3YEC7 729 aaPredicted RBP17.55■□□□□ 0.4
USP4-206ENST00000461553 KIAA0825Q8IV33 1275 aa17.55■□□□□ 0.4
USP4-206ENST00000461553 KAZALD1Q96I82 304 aa17.55■□□□□ 0.4
USP4-206ENST00000461553 SASH1O94885 1247 aa17.54■□□□□ 0.4
USP4-206ENST00000461553 NOGQ13253 232 aa17.54■□□□□ 0.4
USP4-206ENST00000461553 MROH5Q6ZUA9 1318 aa17.53■□□□□ 0.4
USP4-206ENST00000461553 COL1A1P02452 1464 aaPredicted RBP17.53■□□□□ 0.4
USP4-206ENST00000461553 WNT10BO00744 389 aa17.53■□□□□ 0.4
USP4-206ENST00000461553 IL1R1P14778 569 aa17.53■□□□□ 0.4
USP4-206ENST00000461553 BRPF1P55201 1214 aaPredicted RBP17.53■□□□□ 0.4
USP4-206ENST00000461553 NBPF9Q3BBW0 867 aa17.53■□□□□ 0.4
USP4-206ENST00000461553 RGMBQ6NW40 437 aa17.53■□□□□ 0.4
USP4-206ENST00000461553 TRMT2AQ8IZ69 625 aaKnown RBP17.53■□□□□ 0.4
USP4-206ENST00000461553 ANKRD44Q8N8A2 993 aa17.53■□□□□ 0.4
USP4-206ENST00000461553 CASP8AP2Q9UKL3 1982 aa17.52■□□□□ 0.4
USP4-206ENST00000461553 CA12O43570 354 aa17.52■□□□□ 0.4
USP4-206ENST00000461553 UBE4AQ14139 1066 aa17.52■□□□□ 0.4
USP4-206ENST00000461553 ZNF157P51786 506 aaPredicted RBP17.51■□□□□ 0.39
USP4-206ENST00000461553 FKBP1BP68106 108 aa17.51■□□□□ 0.39
USP4-206ENST00000461553 APOBEC3FQ8IUX4 373 aaKnown RBP17.51■□□□□ 0.39
USP4-206ENST00000461553 PUS3Q9BZE2 481 aaKnown RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms