RNA–Protein interactions for RNA: ENST00000461115.5

IFT88-204, Transcript of intraflagellar transport 88, humanhuman

TSL 2

Gene IFT88, Length 1,440 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-204ENST00000461115 ZSWIM6Q9HCJ5 1215 aa13.08□□□□□ -0.32
IFT88-204ENST00000461115 PAG1Q9NWQ8 432 aa13.08□□□□□ -0.32
IFT88-204ENST00000461115 HMG20BQ9P0W2 317 aa13.08□□□□□ -0.32
IFT88-204ENST00000461115 MROH5Q6ZUA9 1318 aa13.08□□□□□ -0.32
IFT88-204ENST00000461115 SSFA2P28290 1259 aa13.07□□□□□ -0.32
IFT88-204ENST00000461115 MCMDC2Q4G0Z9 681 aa13.07□□□□□ -0.32
IFT88-204ENST00000461115 TAF7LQ5H9L4 462 aa13.07□□□□□ -0.32
IFT88-204ENST00000461115 CCDC158Q5M9N0 1113 aa13.07□□□□□ -0.32
IFT88-204ENST00000461115 ZMYM1Q5SVZ6 1142 aa13.07□□□□□ -0.32
IFT88-204ENST00000461115 ZNF467Q7Z7K2 595 aaPredicted RBP13.07□□□□□ -0.32
IFT88-204ENST00000461115 EDC3Q96F86 508 aaKnown RBP13.07□□□□□ -0.32
IFT88-204ENST00000461115 TMX3Q96JJ7 454 aa13.07□□□□□ -0.32
IFT88-204ENST00000461115 NEUROD6Q96NK8 337 aa13.07□□□□□ -0.32
IFT88-204ENST00000461115 ARXQ96QS3 562 aa13.07□□□□□ -0.32
IFT88-204ENST00000461115 NIP7Q9Y221 180 aaKnown RBP eCLIP13.07□□□□□ -0.32
IFT88-204ENST00000461115 RBM8AQ9Y5S9 174 aaKnown RBP13.07□□□□□ -0.32
IFT88-204ENST00000461115 IFIT1P09914 478 aaKnown RBP13.06□□□□□ -0.32
IFT88-204ENST00000461115 MCM4P33991 863 aa13.06□□□□□ -0.32
IFT88-204ENST00000461115 ATP2B3Q16720 1220 aa13.06□□□□□ -0.32
IFT88-204ENST00000461115 CCDC152Q4G0S7 254 aa13.06□□□□□ -0.32
IFT88-204ENST00000461115 VPS53Q5VIR6 699 aa13.06□□□□□ -0.32
IFT88-204ENST00000461115 CREB3L3Q68CJ9 461 aa13.06□□□□□ -0.32
IFT88-204ENST00000461115 SEPT12Q8IYM1 358 aa13.06□□□□□ -0.32
IFT88-204ENST00000461115 BCL11BQ9C0K0 894 aaPredicted RBP13.06□□□□□ -0.32
IFT88-204ENST00000461115 PCDHB8Q9UN66 801 aa13.06□□□□□ -0.32
IFT88-204ENST00000461115 LAMA4Q16363 1823 aa13.06□□□□□ -0.32
IFT88-204ENST00000461115 MYO5AQ9Y4I1 1855 aaKnown RBP13.06□□□□□ -0.32
IFT88-204ENST00000461115 ZFYP08048 801 aaPredicted RBP13.05□□□□□ -0.32
IFT88-204ENST00000461115 CHRM1P11229 460 aaPredicted RBP13.05□□□□□ -0.32
IFT88-204ENST00000461115 ARID4AP29374 1257 aaPredicted RBP13.05□□□□□ -0.32
IFT88-204ENST00000461115 NUCB2P80303 420 aa13.05□□□□□ -0.32
IFT88-204ENST00000461115 METTL24Q5JXM2 366 aa13.05□□□□□ -0.32
IFT88-204ENST00000461115 MEX3CQ5U5Q3 659 aaKnown RBP13.05□□□□□ -0.32
IFT88-204ENST00000461115 MAMSTRQ6ZN01 415 aa13.05□□□□□ -0.32
IFT88-204ENST00000461115 ZNF589Q86UQ0 364 aaPredicted RBP13.05□□□□□ -0.32
IFT88-204ENST00000461115 SPRYD3Q8NCJ5 442 aa13.05□□□□□ -0.32
IFT88-204ENST00000461115 POTEB2H3BUK9 544 aa13.05□□□□□ -0.32
IFT88-204ENST00000461115 SLC27A2O14975 620 aa13.05□□□□□ -0.32
IFT88-204ENST00000461115 ZKSCAN1P17029 563 aaPredicted RBP13.05□□□□□ -0.32
IFT88-204ENST00000461115 ADORA1P30542 326 aa13.05□□□□□ -0.32
IFT88-204ENST00000461115 LRRFIP1Q32MZ4 808 aaKnown RBP13.05□□□□□ -0.32
IFT88-204ENST00000461115 RNF20Q5VTR2 975 aa13.05□□□□□ -0.32
IFT88-204ENST00000461115 DDX46Q7L014 1031 aaKnown RBP13.05□□□□□ -0.32
IFT88-204ENST00000461115 LPIN2Q92539 896 aa13.05□□□□□ -0.32
IFT88-204ENST00000461115 TNPO1Q92973 898 aaKnown RBP13.05□□□□□ -0.32
IFT88-204ENST00000461115 DNAJC2Q99543 621 aaKnown RBP13.05□□□□□ -0.32
IFT88-204ENST00000461115 DSCC1Q9BVC3 393 aa13.05□□□□□ -0.32
IFT88-204ENST00000461115 CCNL1Q9UK58 526 aaPredicted RBP13.05□□□□□ -0.32
IFT88-204ENST00000461115 GOLIM4O00461 696 aa13.04□□□□□ -0.32
IFT88-204ENST00000461115 RNF113AO15541 343 aaKnown RBP13.04□□□□□ -0.32
IFT88-204ENST00000461115 HSP90AA1P07900 732 aaKnown RBP13.04□□□□□ -0.32
IFT88-204ENST00000461115 PUM3Q15397 648 aaKnown RBP13.04□□□□□ -0.32
IFT88-204ENST00000461115 PRPF40BQ6NWY9 871 aaKnown RBP13.04□□□□□ -0.32
IFT88-204ENST00000461115 UPF3BQ9BZI7 483 aaKnown RBP13.04□□□□□ -0.32
IFT88-204ENST00000461115 CNNM1Q9NRU3 951 aa13.04□□□□□ -0.32
IFT88-204ENST00000461115 COL4A1P02462 1669 aa13.03□□□□□ -0.32
IFT88-204ENST00000461115 A0A0G2JS52 829 aa13.03□□□□□ -0.32
IFT88-204ENST00000461115 UQCRFS1P1P0C7P4 283 aa13.03□□□□□ -0.32
IFT88-204ENST00000461115 HCLS1P14317 486 aaPredicted RBP13.03□□□□□ -0.32
IFT88-204ENST00000461115 HMGB2P26583 209 aaKnown RBP13.03□□□□□ -0.32
IFT88-204ENST00000461115 PSMA5P28066 241 aa13.03□□□□□ -0.32
IFT88-204ENST00000461115 KRT32Q14532 448 aa13.03□□□□□ -0.32
IFT88-204ENST00000461115 ADCK5Q3MIX3 580 aa13.03□□□□□ -0.32
IFT88-204ENST00000461115 IER5LQ5T953 404 aa13.03□□□□□ -0.32
IFT88-204ENST00000461115 RUFY3Q7L099 469 aa13.03□□□□□ -0.32
IFT88-204ENST00000461115 CCDC85AQ96PX6 553 aaPredicted RBP13.03□□□□□ -0.32
IFT88-204ENST00000461115 NYXQ9GZU5 481 aa13.03□□□□□ -0.32
IFT88-204ENST00000461115 NDUFB9Q9Y6M9 179 aa13.03□□□□□ -0.32
IFT88-204ENST00000461115 DDX11L8A8MPP1 907 aa13.02□□□□□ -0.33
IFT88-204ENST00000461115 PTMSP20962 102 aa13.02□□□□□ -0.33
IFT88-204ENST00000461115 SCARF1Q14162 830 aa13.02□□□□□ -0.33
IFT88-204ENST00000461115 TTC39AQ5SRH9 613 aa13.02□□□□□ -0.33
IFT88-204ENST00000461115 ZSCAN31Q96LW9 406 aaPredicted RBP13.02□□□□□ -0.33
IFT88-204ENST00000461115 QTRT2Q9H974 415 aaKnown RBP13.02□□□□□ -0.33
IFT88-204ENST00000461115 LIMCH1Q9UPQ0 1083 aa13.02□□□□□ -0.33
IFT88-204ENST00000461115 RTCBQ9Y3I0 505 aaKnown RBP13.02□□□□□ -0.33
IFT88-204ENST00000461115 TAF1P21675 1872 aa13.01□□□□□ -0.33
IFT88-204ENST00000461115 MCAMP43121 646 aa13.01□□□□□ -0.33
IFT88-204ENST00000461115 AK2P54819 239 aa13.01□□□□□ -0.33
IFT88-204ENST00000461115 TTF1Q15361 905 aaPredicted RBP13.01□□□□□ -0.33
IFT88-204ENST00000461115 SLC27A3Q5K4L6 730 aa13.01□□□□□ -0.33
IFT88-204ENST00000461115 TBC1D9BQ66K14 1250 aa13.01□□□□□ -0.33
IFT88-204ENST00000461115 FAM196AQ6ZSG2 479 aa13.01□□□□□ -0.33
IFT88-204ENST00000461115 ZGPATQ8N5A5 531 aaKnown RBP13.01□□□□□ -0.33
IFT88-204ENST00000461115 CDC5LQ99459 802 aaKnown RBP13.01□□□□□ -0.33
IFT88-204ENST00000461115 SEC31BQ9NQW1 1179 aa13.01□□□□□ -0.33
IFT88-204ENST00000461115 SH2B1Q9NRF2 756 aaPredicted RBP13.01□□□□□ -0.33
IFT88-204ENST00000461115 CYP46A1Q9Y6A2 500 aa13.01□□□□□ -0.33
IFT88-204ENST00000461115 MAST3O60307 1309 aa13□□□□□ -0.33
IFT88-204ENST00000461115 CASTP20810 708 aaKnown RBP13□□□□□ -0.33
IFT88-204ENST00000461115 IGHMBP2P38935 993 aaKnown RBP13□□□□□ -0.33
IFT88-204ENST00000461115 UBE3CQ15386 1083 aa13□□□□□ -0.33
IFT88-204ENST00000461115 ERFEQ4G0M1 354 aa13□□□□□ -0.33
IFT88-204ENST00000461115 GORABQ5T7V8 394 aa13□□□□□ -0.33
IFT88-204ENST00000461115 CCDC102BQ68D86 513 aa13□□□□□ -0.33
IFT88-204ENST00000461115 ARHGEF1Q92888 912 aaKnown RBP13□□□□□ -0.33
IFT88-204ENST00000461115 OTUD5Q96G74 571 aa13□□□□□ -0.33
IFT88-204ENST00000461115 JAKMIP1Q96N16 626 aaKnown RBP13□□□□□ -0.33
IFT88-204ENST00000461115 GBP4Q96PP9 640 aa13□□□□□ -0.33
IFT88-204ENST00000461115 SEC62Q99442 399 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms