RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ATP5JP18859 108 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 RXRAP19793 462 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 LUZP1Q86V48 1076 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 ZSWIM6Q9HCJ5 1215 aa13.56□□□□□ -0.24
NPHP4-204ENST00000460696 RGS12O14924 1447 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 FER1L4A9Z1Z3 1794 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 PRC1O43663 620 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 SLC5A1P13866 664 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 SMIM5Q71RC9 77 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 C16orf45Q96MC5 204 aaPredicted RBP13.55□□□□□ -0.24
NPHP4-204ENST00000460696 PTPRUQ92729 1446 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 C1orf167Q5SNV9 1468 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 GOLGA8AA7E2F4 631 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 EPB41L2O43491 1005 aaKnown RBP13.55□□□□□ -0.24
NPHP4-204ENST00000460696 MTMR6Q9Y217 621 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 SLC12A7Q9Y666 1083 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 ZFYP08048 801 aaPredicted RBP13.55□□□□□ -0.24
NPHP4-204ENST00000460696 PRKCSHP14314 528 aaPredicted RBP13.55□□□□□ -0.24
NPHP4-204ENST00000460696 TMEM67Q5HYA8 995 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 CCDC186Q7Z3E2 898 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 ZNF589Q86UQ0 364 aaPredicted RBP13.55□□□□□ -0.24
NPHP4-204ENST00000460696 BRMS1Q9HCU9 246 aa13.55□□□□□ -0.24
NPHP4-204ENST00000460696 RTCBQ9Y3I0 505 aaKnown RBP13.55□□□□□ -0.24
NPHP4-204ENST00000460696 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.55□□□□□ -0.24
NPHP4-204ENST00000460696 METAP2P50579 478 aaKnown RBP eCLIP13.54□□□□□ -0.24
NPHP4-204ENST00000460696 CCDC191Q8NCU4 936 aa13.54□□□□□ -0.24
NPHP4-204ENST00000460696 ZDHHC9Q9Y397 364 aa13.54□□□□□ -0.24
NPHP4-204ENST00000460696 IRS4O14654 1257 aaPredicted RBP13.54□□□□□ -0.24
NPHP4-204ENST00000460696 IGKV5-2P06315 115 aa13.54□□□□□ -0.24
NPHP4-204ENST00000460696 LRRC24Q50LG9 513 aa13.54□□□□□ -0.24
NPHP4-204ENST00000460696 EPHA10Q5JZY3 1008 aa13.54□□□□□ -0.24
NPHP4-204ENST00000460696 OTUD7BQ6GQQ9 843 aa13.54□□□□□ -0.24
NPHP4-204ENST00000460696 RRP9O43818 475 aaKnown RBP13.54□□□□□ -0.24
NPHP4-204ENST00000460696 IARSP41252 1262 aaKnown RBP13.54□□□□□ -0.24
NPHP4-204ENST00000460696 NOLC1Q14978 699 aaKnown RBP eCLIP13.54□□□□□ -0.24
NPHP4-204ENST00000460696 FAM177A1Q8N128 213 aaPredicted RBP13.54□□□□□ -0.24
NPHP4-204ENST00000460696 MAP4K1Q92918 833 aa13.54□□□□□ -0.24
NPHP4-204ENST00000460696 TPM1P09493 284 aa13.53□□□□□ -0.24
NPHP4-204ENST00000460696 CCDC112Q8NEF3 446 aa13.53□□□□□ -0.24
NPHP4-204ENST00000460696 MAP7D2Q96T17 732 aa13.53□□□□□ -0.24
NPHP4-204ENST00000460696 TRMT1Q9NXH9 659 aaKnown RBP13.53□□□□□ -0.24
NPHP4-204ENST00000460696 RANBP6O60518 1105 aaKnown RBP13.53□□□□□ -0.24
NPHP4-204ENST00000460696 XAGE2Q96GT9 111 aa13.53□□□□□ -0.24
NPHP4-204ENST00000460696 COPRSQ9NQ92 184 aa13.53□□□□□ -0.24
NPHP4-204ENST00000460696 ZBTB7AO95365 584 aa13.53□□□□□ -0.24
NPHP4-204ENST00000460696 POLD1P28340 1107 aa13.53□□□□□ -0.24
NPHP4-204ENST00000460696 MARCKSP29966 332 aaPredicted RBP13.53□□□□□ -0.24
NPHP4-204ENST00000460696 FAM196AQ6ZSG2 479 aa13.53□□□□□ -0.24
NPHP4-204ENST00000460696 C17orf53Q8N3J3 647 aaPredicted RBP13.53□□□□□ -0.24
NPHP4-204ENST00000460696 NOL7Q9UMY1 257 aaKnown RBP13.53□□□□□ -0.24
NPHP4-204ENST00000460696 ANKARQ7Z5J8 1434 aa13.53□□□□□ -0.24
NPHP4-204ENST00000460696 SHPRHQ149N8 1683 aa13.52□□□□□ -0.24
NPHP4-204ENST00000460696 CTAGE5O15320 804 aa13.52□□□□□ -0.24
NPHP4-204ENST00000460696 SLC3A2P08195 630 aaKnown RBP13.52□□□□□ -0.24
NPHP4-204ENST00000460696 TTF1Q15361 905 aaPredicted RBP13.52□□□□□ -0.24
NPHP4-204ENST00000460696 DZIP3Q86Y13 1208 aaKnown RBP13.52□□□□□ -0.24
NPHP4-204ENST00000460696 SLC26A6Q9BXS9 759 aa13.52□□□□□ -0.24
NPHP4-204ENST00000460696 ASAP1Q9ULH1 1129 aa13.52□□□□□ -0.24
NPHP4-204ENST00000460696 ADGRB2O60241 1585 aa13.52□□□□□ -0.25
NPHP4-204ENST00000460696 OFD1O75665 1012 aa13.52□□□□□ -0.25
NPHP4-204ENST00000460696 CFAP100Q494V2 611 aa13.52□□□□□ -0.25
NPHP4-204ENST00000460696 HS1BP3Q53T59 392 aa13.52□□□□□ -0.25
NPHP4-204ENST00000460696 TTLL5Q6EMB2 1281 aa13.52□□□□□ -0.25
NPHP4-204ENST00000460696 IL25Q9H293 177 aa13.52□□□□□ -0.25
NPHP4-204ENST00000460696 TAF5LO75529 589 aa13.52□□□□□ -0.25
NPHP4-204ENST00000460696 SAMD1Q6SPF0 538 aaPredicted RBP13.52□□□□□ -0.25
NPHP4-204ENST00000460696 STX1AQ16623 288 aa13.51□□□□□ -0.25
NPHP4-204ENST00000460696 PPP1R9BQ96SB3 815 aa13.51□□□□□ -0.25
NPHP4-204ENST00000460696 PUS3Q9BZE2 481 aaKnown RBP13.51□□□□□ -0.25
NPHP4-204ENST00000460696 HELLSQ9NRZ9 838 aa13.51□□□□□ -0.25
NPHP4-204ENST00000460696 MYO5BQ9ULV0 1848 aa13.51□□□□□ -0.25
NPHP4-204ENST00000460696 TTC6Q86TZ1 520 aa13.51□□□□□ -0.25
NPHP4-204ENST00000460696 LEO1Q8WVC0 666 aaPredicted RBP13.51□□□□□ -0.25
NPHP4-204ENST00000460696 SMARCC1Q92922 1105 aaPredicted RBP13.51□□□□□ -0.25
NPHP4-204ENST00000460696 ALG1Q9BT22 464 aa13.51□□□□□ -0.25
NPHP4-204ENST00000460696 USP32Q8NFA0 1604 aa13.51□□□□□ -0.25
NPHP4-204ENST00000460696 CYP27B1O15528 508 aa13.51□□□□□ -0.25
NPHP4-204ENST00000460696 LIG1P18858 919 aa13.51□□□□□ -0.25
NPHP4-204ENST00000460696 ITGA6P23229 1130 aa13.51□□□□□ -0.25
NPHP4-204ENST00000460696 NBPF5PQ86XG9 351 aaPredicted RBP13.51□□□□□ -0.25
NPHP4-204ENST00000460696 MNS1Q8NEH6 495 aa13.51□□□□□ -0.25
NPHP4-204ENST00000460696 ZAP70P43403 619 aa13.5□□□□□ -0.25
NPHP4-204ENST00000460696 PTPN12Q05209 780 aaKnown RBP13.5□□□□□ -0.25
NPHP4-204ENST00000460696 TSR1Q2NL82 804 aaKnown RBP13.5□□□□□ -0.25
NPHP4-204ENST00000460696 SLC4A8Q2Y0W8 1093 aa13.5□□□□□ -0.25
NPHP4-204ENST00000460696 ANKRD20A12PQ8NF67 263 aa13.5□□□□□ -0.25
NPHP4-204ENST00000460696 PCMTD1Q96MG8 357 aaPredicted RBP13.5□□□□□ -0.25
NPHP4-204ENST00000460696 ADCY9O60503 1353 aa13.5□□□□□ -0.25
NPHP4-204ENST00000460696 ZBTB43O43298 467 aa13.5□□□□□ -0.25
NPHP4-204ENST00000460696 MFSD6Q6ZSS7 791 aa13.5□□□□□ -0.25
NPHP4-204ENST00000460696 MTERF4Q7Z6M4 381 aaKnown RBP13.5□□□□□ -0.25
NPHP4-204ENST00000460696 WDR17Q8IZU2 1322 aa13.5□□□□□ -0.25
NPHP4-204ENST00000460696 TECPR2O15040 1411 aa13.5□□□□□ -0.25
NPHP4-204ENST00000460696 PTGS1P23219 599 aa13.5□□□□□ -0.25
NPHP4-204ENST00000460696 R3HDM1Q15032 1099 aaKnown RBP13.5□□□□□ -0.25
NPHP4-204ENST00000460696 CAVIN4Q5BKX8 364 aa13.5□□□□□ -0.25
NPHP4-204ENST00000460696 SIGLEC1Q9BZZ2 1709 aa13.5□□□□□ -0.25
NPHP4-204ENST00000460696 SSRP1Q08945 709 aaKnown RBP13.49□□□□□ -0.25
NPHP4-204ENST00000460696 SLFNL1Q499Z3 407 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 MRPS27Q92552 414 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms