RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 USP50Q70EL3 339 aaPredicted RBP23.39■■□□□ 1.33
USP39-209ENST00000458268 FTSJ3Q8IY81 847 aaKnown RBP23.39■■□□□ 1.33
USP39-209ENST00000458268 TRPM4Q8TD43 1214 aa23.39■■□□□ 1.33
USP39-209ENST00000458268 METTL24Q5JXM2 366 aa23.38■■□□□ 1.33
USP39-209ENST00000458268 SAMD7Q7Z3H4 446 aa23.38■■□□□ 1.33
USP39-209ENST00000458268 COA1Q9GZY4 146 aa23.38■■□□□ 1.33
USP39-209ENST00000458268 USP17L3A6NCW0 530 aa23.37■■□□□ 1.33
USP39-209ENST00000458268 USP17L4A6NCW7 530 aa23.37■■□□□ 1.33
USP39-209ENST00000458268 INTS3Q68E01 1043 aaKnown RBP23.37■■□□□ 1.33
USP39-209ENST00000458268 USP17L1Q7RTZ2 530 aa23.37■■□□□ 1.33
USP39-209ENST00000458268 PODNQ7Z5L7 613 aa23.37■■□□□ 1.33
USP39-209ENST00000458268 CNTROBQ8N137 903 aa23.37■■□□□ 1.33
USP39-209ENST00000458268 YTHDC1Q96MU7 727 aaKnown RBP23.37■■□□□ 1.33
USP39-209ENST00000458268 MXD3Q9BW11 206 aa23.37■■□□□ 1.33
USP39-209ENST00000458268 SIL1Q9H173 461 aa23.37■■□□□ 1.33
USP39-209ENST00000458268 RPS12P25398 132 aaKnown RBP23.36■■□□□ 1.33
USP39-209ENST00000458268 RSBN1LQ6PCB5 846 aaPredicted RBP23.36■■□□□ 1.33
USP39-209ENST00000458268 TMEM57Q8N5G2 664 aa23.36■■□□□ 1.33
USP39-209ENST00000458268 GNAI3P08754 354 aa23.35■■□□□ 1.33
USP39-209ENST00000458268 VIL1P09327 827 aaKnown RBP23.35■■□□□ 1.33
USP39-209ENST00000458268 ZNF804AQ7Z570 1209 aa23.35■■□□□ 1.33
USP39-209ENST00000458268 DPF2Q92785 391 aa23.35■■□□□ 1.33
USP39-209ENST00000458268 HDAC5Q9UQL6 1122 aa23.35■■□□□ 1.33
USP39-209ENST00000458268 JAG2Q9Y219 1238 aa23.35■■□□□ 1.33
USP39-209ENST00000458268 MROH5Q6ZUA9 1318 aa23.34■■□□□ 1.33
USP39-209ENST00000458268 GTF2IP78347 998 aa23.34■■□□□ 1.33
USP39-209ENST00000458268 HIRAP54198 1017 aaPredicted RBP23.33■■□□□ 1.33
USP39-209ENST00000458268 FMR1Q06787 632 aaKnown RBP eCLIP23.33■■□□□ 1.333e-6■■■□□ 16.1
USP39-209ENST00000458268 ITPRIPQ8IWB1 547 aa23.33■■□□□ 1.33
USP39-209ENST00000458268 RIPOR2Q9Y4F9 1068 aa23.33■■□□□ 1.33
USP39-209ENST00000458268 EGFRP00533 1210 aa23.32■■□□□ 1.32
USP39-209ENST00000458268 GYG1P46976 350 aa23.32■■□□□ 1.32
USP39-209ENST00000458268 KIF4BQ2VIQ3 1234 aa23.32■■□□□ 1.32
USP39-209ENST00000458268 DZIP1LQ8IYY4 767 aaKnown RBP23.32■■□□□ 1.32
USP39-209ENST00000458268 CD209Q9NNX6 404 aa23.32■■□□□ 1.32
USP39-209ENST00000458268 ZNF646O15015 1829 aaPredicted RBP23.31■■□□□ 1.32
USP39-209ENST00000458268 TRAF5O00463 557 aa23.31■■□□□ 1.32
USP39-209ENST00000458268 ITGBL1O95965 494 aaPredicted RBP23.31■■□□□ 1.32
USP39-209ENST00000458268 TTLL5Q6EMB2 1281 aa23.31■■□□□ 1.32
USP39-209ENST00000458268 AGBL3Q8NEM8 1001 aa23.31■■□□□ 1.32
USP39-209ENST00000458268 GLIS2Q9BZE0 524 aaPredicted RBP23.31■■□□□ 1.32
USP39-209ENST00000458268 PA2G4Q9UQ80 394 aaKnown RBP23.31■■□□□ 1.32
USP39-209ENST00000458268 EYA2O00167 538 aa23.3■■□□□ 1.32
USP39-209ENST00000458268 USP17L8P0C7I0 530 aa23.3■■□□□ 1.32
USP39-209ENST00000458268 RFX5P48382 616 aaPredicted RBP23.3■■□□□ 1.32
USP39-209ENST00000458268 UBE4AQ14139 1066 aa23.3■■□□□ 1.32
USP39-209ENST00000458268 DACT2Q5SW24 774 aa23.3■■□□□ 1.32
USP39-209ENST00000458268 VPS37DQ86XT2 251 aa23.3■■□□□ 1.32
USP39-209ENST00000458268 ZNF408Q9H9D4 720 aa23.3■■□□□ 1.32
USP39-209ENST00000458268 IQSEC3Q9UPP2 1182 aaPredicted RBP23.3■■□□□ 1.32
USP39-209ENST00000458268 POLR2AP24928 1970 aaKnown RBP23.29■■□□□ 1.32
USP39-209ENST00000458268 GNAI2P04899 355 aa23.29■■□□□ 1.32
USP39-209ENST00000458268 PTPN12Q05209 780 aaKnown RBP23.29■■□□□ 1.32
USP39-209ENST00000458268 STRIP1Q5VSL9 837 aa23.29■■□□□ 1.32
USP39-209ENST00000458268 KIAA0825Q8IV33 1275 aa23.29■■□□□ 1.32
USP39-209ENST00000458268 PASKQ96RG2 1323 aa23.29■■□□□ 1.32
USP39-209ENST00000458268 F8W031 263 aaPredicted RBP23.28■■□□□ 1.32
USP39-209ENST00000458268 SRGAP3O43295 1099 aa23.28■■□□□ 1.32
USP39-209ENST00000458268 RLBP1P12271 317 aa23.28■■□□□ 1.32
USP39-209ENST00000458268 C1orf115Q9H7X2 142 aa23.28■■□□□ 1.32
USP39-209ENST00000458268 MKRN1Q9UHC7 482 aaKnown RBP23.28■■□□□ 1.32
USP39-209ENST00000458268 IRS2Q9Y4H2 1338 aa23.28■■□□□ 1.32
USP39-209ENST00000458268 TRPM7Q96QT4 1865 aa23.28■■□□□ 1.32
USP39-209ENST00000458268 FRAT2O75474 233 aaPredicted RBP23.27■■□□□ 1.32
USP39-209ENST00000458268 PDE8BO95263 885 aa23.27■■□□□ 1.32
USP39-209ENST00000458268 HIBADHP31937 336 aaKnown RBP23.27■■□□□ 1.32
USP39-209ENST00000458268 C15orf52Q6ZUT6 534 aaKnown RBP23.27■■□□□ 1.32
USP39-209ENST00000458268 PANK1Q8TE04 598 aa23.27■■□□□ 1.32
USP39-209ENST00000458268 ASTN2O75129 1339 aaPredicted RBP23.27■■□□□ 1.32
USP39-209ENST00000458268 TMEM88BA6NKF7 163 aa23.26■■□□□ 1.31
USP39-209ENST00000458268 USP48Q86UV5 1035 aa23.26■■□□□ 1.31
USP39-209ENST00000458268 OGFOD1Q8N543 542 aa23.26■■□□□ 1.31
USP39-209ENST00000458268 DCPSQ96C86 337 aaKnown RBP23.26■■□□□ 1.31
USP39-209ENST00000458268 MYOZ2Q9NPC6 264 aa23.26■■□□□ 1.31
USP39-209ENST00000458268 CREBZFQ9NS37 354 aa23.26■■□□□ 1.31
USP39-209ENST00000458268 GGA3Q9NZ52 723 aa23.26■■□□□ 1.31
USP39-209ENST00000458268 RCAN3Q9UKA8 241 aa23.26■■□□□ 1.31
USP39-209ENST00000458268 ABT1Q9ULW3 272 aaKnown RBP23.26■■□□□ 1.31
USP39-209ENST00000458268 MYO3BQ8WXR4 1341 aa23.26■■□□□ 1.31
USP39-209ENST00000458268 CHAF1AQ13111 956 aaPredicted RBP23.25■■□□□ 1.31
USP39-209ENST00000458268 DLK2Q6UY11 383 aa23.25■■□□□ 1.31
USP39-209ENST00000458268 PAXIP1Q6ZW49 1069 aaPredicted RBP23.25■■□□□ 1.31
USP39-209ENST00000458268 GMLQ99445 158 aa23.25■■□□□ 1.31
USP39-209ENST00000458268 MYH13Q9UKX3 1938 aa23.24■■□□□ 1.31
USP39-209ENST00000458268 IFIT1P09914 478 aaKnown RBP23.24■■□□□ 1.31
USP39-209ENST00000458268 PUM3Q15397 648 aaKnown RBP23.24■■□□□ 1.31
USP39-209ENST00000458268 CAVIN4Q5BKX8 364 aa23.24■■□□□ 1.31
USP39-209ENST00000458268 ATG9AQ7Z3C6 839 aa23.24■■□□□ 1.31
USP39-209ENST00000458268 VGLL2Q8N8G2 317 aa23.24■■□□□ 1.31
USP39-209ENST00000458268 KLRG1Q96E93 195 aa23.24■■□□□ 1.31
USP39-209ENST00000458268 FAM84BQ96KN1 310 aaPredicted RBP23.24■■□□□ 1.31
USP39-209ENST00000458268 CEP126Q9P2H0 1117 aa23.24■■□□□ 1.31
USP39-209ENST00000458268 ADM5C9JUS6 153 aa23.23■■□□□ 1.31
USP39-209ENST00000458268 SASH1O94885 1247 aa23.23■■□□□ 1.31
USP39-209ENST00000458268 SLC5A1P13866 664 aa23.23■■□□□ 1.31
USP39-209ENST00000458268 IL1R1P14778 569 aa23.23■■□□□ 1.31
USP39-209ENST00000458268 ZNF280AP59817 542 aaPredicted RBP23.23■■□□□ 1.31
USP39-209ENST00000458268 SCARF1Q14162 830 aa23.23■■□□□ 1.31
USP39-209ENST00000458268 ANGEL2Q5VTE6 544 aaKnown RBP23.23■■□□□ 1.31
USP39-209ENST00000458268 KRT26Q7Z3Y9 468 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms