RNA–Protein interactions for RNA: ENST00000458013.6

SNX27-204, Transcript of sorting nexin family member 27, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SNX27, Length 6,403 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-204ENST00000458013 ZSCAN16Q9H4T2 348 aaPredicted RBP22.33■■□□□ 1.17
SNX27-204ENST00000458013 RNASE9P60153 205 aaKnown RBP22.33■■□□□ 1.17
SNX27-204ENST00000458013 MCMDC2Q4G0Z9 681 aa22.33■■□□□ 1.17
SNX27-204ENST00000458013 SSX2IPQ9Y2D8 614 aa22.33■■□□□ 1.17
SNX27-204ENST00000458013 F13A1P00488 732 aa22.33■■□□□ 1.17
SNX27-204ENST00000458013 KRT23Q9C075 422 aa22.33■■□□□ 1.17
SNX27-204ENST00000458013 CCDC171Q6TFL3 1326 aa22.33■■□□□ 1.17
SNX27-204ENST00000458013 MAGEB6P1A0A0J9YX57 407 aa22.33■■□□□ 1.17
SNX27-204ENST00000458013 SF3A3Q12874 501 aaKnown RBP eCLIP22.33■■□□□ 1.17
SNX27-204ENST00000458013 HMG20BQ9P0W2 317 aa22.33■■□□□ 1.17
SNX27-204ENST00000458013 PLCB3Q01970 1234 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 SYT10Q6XYQ8 523 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 LRRC59Q96AG4 307 aaKnown RBP22.32■■□□□ 1.16
SNX27-204ENST00000458013 KRT24Q2M2I5 525 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 CCDC114Q96M63 670 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 RABEP2Q9H5N1 569 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 CYLC1P35663 651 aaPredicted RBP22.32■■□□□ 1.16
SNX27-204ENST00000458013 CTAGE9A4FU28 777 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 SNRPA1P09661 255 aaKnown RBP22.32■■□□□ 1.16
SNX27-204ENST00000458013 KCNK9Q9NPC2 374 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 PDE1AP54750 535 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 LMBR1LQ6UX01 489 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 GOLGA6L9A6NEM1 432 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 HSPA4P34932 840 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 TNNI2P48788 182 aa22.32■■□□□ 1.16
SNX27-204ENST00000458013 IFI16Q16666 785 aaKnown RBP22.32■■□□□ 1.16
SNX27-204ENST00000458013 UVSSAQ2YD98 709 aa22.31■■□□□ 1.16
SNX27-204ENST00000458013 DCAF17Q5H9S7 520 aaPredicted RBP22.31■■□□□ 1.16
SNX27-204ENST00000458013 NAA16Q6N069 864 aaPredicted RBP22.31■■□□□ 1.16
SNX27-204ENST00000458013 CCT6AP40227 531 aaKnown RBP22.31■■□□□ 1.16
SNX27-204ENST00000458013 SELENOOQ9BVL4 669 aa22.31■■□□□ 1.16
SNX27-204ENST00000458013 CTNND2Q9UQB3 1225 aa22.31■■□□□ 1.16
SNX27-204ENST00000458013 XRCC6P12956 609 aaKnown RBP eCLIP22.31■■□□□ 1.16
SNX27-204ENST00000458013 CWF19L2Q2TBE0 894 aaKnown RBP22.31■■□□□ 1.16
SNX27-204ENST00000458013 ATP2B3Q16720 1220 aa22.31■■□□□ 1.16
SNX27-204ENST00000458013 TLDC2A0PJX2 215 aa22.31■■□□□ 1.16
SNX27-204ENST00000458013 FAM13AO94988 1023 aa22.31■■□□□ 1.16
SNX27-204ENST00000458013 AK2P54819 239 aa22.31■■□□□ 1.16
SNX27-204ENST00000458013 CABLES1Q8TDN4 633 aa22.31■■□□□ 1.16
SNX27-204ENST00000458013 IFNKQ9P0W0 207 aa22.31■■□□□ 1.16
SNX27-204ENST00000458013 DYNC1I1O14576 645 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 LDHCP07864 332 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 KRT222Q8N1A0 295 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 PAG1Q9NWQ8 432 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 WDHD1O75717 1129 aaPredicted RBP22.3■■□□□ 1.16
SNX27-204ENST00000458013 ERCC3P19447 782 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 TFCP2Q12800 502 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 ERMNQ8TAM6 284 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 BBXQ8WY36 941 aaPredicted RBP22.3■■□□□ 1.16
SNX27-204ENST00000458013 TCHPQ9BT92 498 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 CLEC11AQ9Y240 323 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 NCAPD3P42695 1498 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 GTF2A1P52655 376 aaPredicted RBP22.3■■□□□ 1.16
SNX27-204ENST00000458013 GSTO1P78417 241 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 RAPGEF1Q13905 1077 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 CCDC141Q6ZP82 1450 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 RASAL2Q9UJF2 1139 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 KRT2P35908 639 aa22.3■■□□□ 1.16
SNX27-204ENST00000458013 UAP1Q16222 522 aaPredicted RBP22.3■■□□□ 1.16
SNX27-204ENST00000458013 POGZQ7Z3K3 1410 aa22.29■■□□□ 1.16
SNX27-204ENST00000458013 HARSP12081 509 aaKnown RBP22.29■■□□□ 1.16
SNX27-204ENST00000458013 CCDC129Q6ZRS4 1044 aa22.29■■□□□ 1.16
SNX27-204ENST00000458013 CEP57Q86XR8 500 aa22.29■■□□□ 1.16
SNX27-204ENST00000458013 UTP14AQ9BVJ6 771 aaKnown RBP22.29■■□□□ 1.16
SNX27-204ENST00000458013 NIP7Q9Y221 180 aaKnown RBP eCLIP22.29■■□□□ 1.16
SNX27-204ENST00000458013 ESR2Q92731 530 aa22.29■■□□□ 1.16
SNX27-204ENST00000458013 TYRO3Q06418 890 aa22.28■■□□□ 1.16
SNX27-204ENST00000458013 FERMT1Q9BQL6 677 aa22.28■■□□□ 1.16
SNX27-204ENST00000458013 HGSO14964 777 aaPredicted RBP22.28■■□□□ 1.16
SNX27-204ENST00000458013 LONRF3Q496Y0 759 aa22.28■■□□□ 1.16
SNX27-204ENST00000458013 EHBP1Q8NDI1 1231 aa22.28■■□□□ 1.16
SNX27-204ENST00000458013 CTAGE1Q96RT6 745 aa22.28■■□□□ 1.16
SNX27-204ENST00000458013 ARFGAP3Q9NP61 516 aa22.28■■□□□ 1.16
SNX27-204ENST00000458013 UBLCP1Q8WVY7 318 aaPredicted RBP22.28■■□□□ 1.16
SNX27-204ENST00000458013 GTF3C6Q969F1 213 aa22.28■■□□□ 1.16
SNX27-204ENST00000458013 UQCRFS1P1P0C7P4 283 aa22.28■■□□□ 1.16
SNX27-204ENST00000458013 KCNG4Q8TDN1 519 aa22.28■■□□□ 1.16
SNX27-204ENST00000458013 SETDB2Q96T68 719 aa22.28■■□□□ 1.16
SNX27-204ENST00000458013 ERCC5P28715 1186 aaPredicted RBP22.27■■□□□ 1.16
SNX27-204ENST00000458013 MAP3K9P80192 1104 aa22.27■■□□□ 1.16
SNX27-204ENST00000458013 ZNF174Q15697 407 aa22.27■■□□□ 1.16
SNX27-204ENST00000458013 MRPL50Q8N5N7 158 aaKnown RBP22.27■■□□□ 1.16
SNX27-204ENST00000458013 EIF6P56537 245 aaKnown RBP22.27■■□□□ 1.16
SNX27-204ENST00000458013 TMCO4Q5TGY1 634 aa22.27■■□□□ 1.16
SNX27-204ENST00000458013 TIGD1Q96MW7 591 aa22.27■■□□□ 1.16
SNX27-204ENST00000458013 IRX5P78411 483 aaPredicted RBP22.27■■□□□ 1.16
SNX27-204ENST00000458013 LRRC27Q9C0I9 530 aa22.27■■□□□ 1.15
SNX27-204ENST00000458013 CHMP2AO43633 222 aa22.26■■□□□ 1.15
SNX27-204ENST00000458013 CAPN2P17655 700 aa22.26■■□□□ 1.15
SNX27-204ENST00000458013 ZBTB16Q05516 673 aa22.26■■□□□ 1.15
SNX27-204ENST00000458013 TACC1O75410 805 aa22.26■■□□□ 1.15
SNX27-204ENST00000458013 MRC2Q9UBG0 1479 aa22.26■■□□□ 1.15
SNX27-204ENST00000458013 KRT5P13647 590 aa22.26■■□□□ 1.15
SNX27-204ENST00000458013 GOLGA1Q92805 767 aa22.26■■□□□ 1.15
SNX27-204ENST00000458013 SPTLC2O15270 562 aa22.26■■□□□ 1.15
SNX27-204ENST00000458013 NBPF7P0C2Y1 421 aaPredicted RBP22.26■■□□□ 1.15
SNX27-204ENST00000458013 ZMYND15Q9H091 742 aa22.26■■□□□ 1.15
SNX27-204ENST00000458013 KRT9P35527 623 aa22.26■■□□□ 1.15
SNX27-204ENST00000458013 RAB3IL1Q8TBN0 382 aa22.26■■□□□ 1.15
SNX27-204ENST00000458013 MCM9Q9NXL9 1143 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms