RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 RNF113AO15541 343 aaKnown RBP17.16■□□□□ 0.34
USP39-207ENST00000450066 ST18O60284 1047 aa17.16■□□□□ 0.34
USP39-207ENST00000450066 CD2BP2O95400 341 aaKnown RBP17.16■□□□□ 0.34
USP39-207ENST00000450066 TTF1Q15361 905 aaPredicted RBP17.16■□□□□ 0.34
USP39-207ENST00000450066 AKAP11Q9UKA4 1901 aa17.16■□□□□ 0.34
USP39-207ENST00000450066 A0A1B0GUL6 1792 aa17.16■□□□□ 0.34
USP39-207ENST00000450066 ZFYP08048 801 aaPredicted RBP17.16■□□□□ 0.34
USP39-207ENST00000450066 CRY2Q49AN0 593 aa17.16■□□□□ 0.34
USP39-207ENST00000450066 ZMYM1Q5SVZ6 1142 aa17.16■□□□□ 0.34
USP39-207ENST00000450066 PI16Q6UXB8 463 aa17.16■□□□□ 0.34
USP39-207ENST00000450066 ZNF589Q86UQ0 364 aaPredicted RBP17.16■□□□□ 0.34
USP39-207ENST00000450066 CAMKK2Q96RR4 588 aa17.16■□□□□ 0.34
USP39-207ENST00000450066 KCNB2Q92953 911 aa17.15■□□□□ 0.34
USP39-207ENST00000450066 ANKRD2Q9GZV1 360 aa17.15■□□□□ 0.34
USP39-207ENST00000450066 K7ELQ4 463 aaPredicted RBP17.14■□□□□ 0.33
USP39-207ENST00000450066 CHGBP05060 677 aa17.14■□□□□ 0.33
USP39-207ENST00000450066 GRAPQ13588 217 aa17.14■□□□□ 0.33
USP39-207ENST00000450066 NECTIN1Q15223 517 aa17.14■□□□□ 0.33
USP39-207ENST00000450066 GRAPLQ8TC17 118 aaPredicted RBP17.14■□□□□ 0.33
USP39-207ENST00000450066 SNX14Q9Y5W7 946 aa17.14■□□□□ 0.33
USP39-207ENST00000450066 PNPLA7Q6ZV29 1317 aa17.14■□□□□ 0.33
USP39-207ENST00000450066 CYP2E1P05181 493 aaPredicted RBP17.14■□□□□ 0.33
USP39-207ENST00000450066 SPATA5Q8NB90 893 aa17.14■□□□□ 0.33
USP39-207ENST00000450066 HMG20BQ9P0W2 317 aa17.14■□□□□ 0.33
USP39-207ENST00000450066 RBM8AQ9Y5S9 174 aaKnown RBP17.14■□□□□ 0.33
USP39-207ENST00000450066 BCAMP50895 628 aa17.13■□□□□ 0.33
USP39-207ENST00000450066 RPGRQ92834 1020 aaKnown RBP17.13■□□□□ 0.33
USP39-207ENST00000450066 SEC62Q99442 399 aaKnown RBP17.13■□□□□ 0.33
USP39-207ENST00000450066 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.13■□□□□ 0.331e-6■■■□□ 14.8
USP39-207ENST00000450066 KLRG2A4D1S0 409 aaPredicted RBP17.12■□□□□ 0.33
USP39-207ENST00000450066 KCNJ4P48050 445 aa17.12■□□□□ 0.33
USP39-207ENST00000450066 NEK4P51957 841 aa17.12■□□□□ 0.33
USP39-207ENST00000450066 EN1Q05925 392 aaPredicted RBP17.12■□□□□ 0.33
USP39-207ENST00000450066 RASGRF1Q13972 1273 aa17.12■□□□□ 0.33
USP39-207ENST00000450066 EZH2Q15910 746 aaKnown RBP17.12■□□□□ 0.33
USP39-207ENST00000450066 RASEFQ8IZ41 740 aa17.12■□□□□ 0.33
USP39-207ENST00000450066 ZNF804BA4D1E1 1349 aa17.12■□□□□ 0.33
USP39-207ENST00000450066 ZSCAN25Q6NSZ9 544 aa17.12■□□□□ 0.33
USP39-207ENST00000450066 PRPF40BQ6NWY9 871 aaKnown RBP17.12■□□□□ 0.33
USP39-207ENST00000450066 ZKSCAN1P17029 563 aaPredicted RBP17.11■□□□□ 0.33
USP39-207ENST00000450066 HOXA10P31260 410 aaPredicted RBP17.11■□□□□ 0.33
USP39-207ENST00000450066 SLFNL1Q499Z3 407 aa17.11■□□□□ 0.33
USP39-207ENST00000450066 CAVIN4Q5BKX8 364 aa17.11■□□□□ 0.33
USP39-207ENST00000450066 RNF20Q5VTR2 975 aa17.11■□□□□ 0.33
USP39-207ENST00000450066 CREB3L3Q68CJ9 461 aa17.11■□□□□ 0.33
USP39-207ENST00000450066 CCDC129Q6ZRS4 1044 aa17.11■□□□□ 0.33
USP39-207ENST00000450066 RBM17Q96I25 401 aaKnown RBP17.11■□□□□ 0.33
USP39-207ENST00000450066 PIH1D3Q9NQM4 214 aaKnown RBP17.11■□□□□ 0.33
USP39-207ENST00000450066 GNL3LQ9NVN8 582 aaKnown RBP17.11■□□□□ 0.33
USP39-207ENST00000450066 MAST3O60307 1309 aa17.11■□□□□ 0.33
USP39-207ENST00000450066 MCM2P49736 904 aa17.1■□□□□ 0.33
USP39-207ENST00000450066 SLC15A2Q16348 729 aa17.1■□□□□ 0.33
USP39-207ENST00000450066 APPBP2Q92624 585 aa17.1■□□□□ 0.33
USP39-207ENST00000450066 NRXN2Q9P2S2 1712 aa17.1■□□□□ 0.33
USP39-207ENST00000450066 WTIPA6NIX2 430 aaPredicted RBP17.09■□□□□ 0.33
USP39-207ENST00000450066 OSBP2Q969R2 916 aa17.09■□□□□ 0.33
USP39-207ENST00000450066 BRIP1Q9BX63 1249 aa17.09■□□□□ 0.33
USP39-207ENST00000450066 TM6SF1Q9BZW5 370 aa17.09■□□□□ 0.33
USP39-207ENST00000450066 SLKQ9H2G2 1235 aaPredicted RBP17.09■□□□□ 0.33
USP39-207ENST00000450066 U3KPZ7 1027 aaPredicted RBP17.09■□□□□ 0.33
USP39-207ENST00000450066 SLC27A2O14975 620 aa17.09■□□□□ 0.33
USP39-207ENST00000450066 ADD2P35612 726 aa17.09■□□□□ 0.33
USP39-207ENST00000450066 GYG1P46976 350 aa17.09■□□□□ 0.33
USP39-207ENST00000450066 SF3B2Q13435 895 aaKnown RBP17.09■□□□□ 0.33
USP39-207ENST00000450066 WASHC4Q2M389 1173 aa17.09■□□□□ 0.33
USP39-207ENST00000450066 SLC9C2Q5TAH2 1124 aa17.09■□□□□ 0.33
USP39-207ENST00000450066 FAM84BQ96KN1 310 aaPredicted RBP17.09■□□□□ 0.33
USP39-207ENST00000450066 DSCC1Q9BVC3 393 aa17.09■□□□□ 0.33
USP39-207ENST00000450066 ANO8Q9HCE9 1232 aaPredicted RBP17.09■□□□□ 0.33
USP39-207ENST00000450066 STK32BQ9NY57 414 aa17.09■□□□□ 0.33
USP39-207ENST00000450066 IDH1O75874 414 aaKnown RBP17.08■□□□□ 0.33
USP39-207ENST00000450066 MMP10P09238 476 aa17.08■□□□□ 0.33
USP39-207ENST00000450066 UBE3CQ15386 1083 aa17.08■□□□□ 0.33
USP39-207ENST00000450066 TSGA10IPQ3SY00 556 aa17.08■□□□□ 0.33
USP39-207ENST00000450066 SPRYD3Q8NCJ5 442 aa17.08■□□□□ 0.33
USP39-207ENST00000450066 CRAMP1Q96RY5 1269 aa17.08■□□□□ 0.33
USP39-207ENST00000450066 UPF3BQ9BZI7 483 aaKnown RBP17.08■□□□□ 0.33
USP39-207ENST00000450066 PARP3Q9Y6F1 533 aa17.08■□□□□ 0.33
USP39-207ENST00000450066 MYH7P12883 1935 aa17.08■□□□□ 0.32
USP39-207ENST00000450066 M0R2C6 588 aa17.08■□□□□ 0.32
USP39-207ENST00000450066 BBOX1O75936 387 aa17.08■□□□□ 0.32
USP39-207ENST00000450066 BAG6P46379 1132 aa17.08■□□□□ 0.32
USP39-207ENST00000450066 FBXO33Q7Z6M2 555 aa17.08■□□□□ 0.32
USP39-207ENST00000450066 VPS37DQ86XT2 251 aa17.08■□□□□ 0.32
USP39-207ENST00000450066 LEMD3Q9Y2U8 911 aa17.07■□□□□ 0.32
USP39-207ENST00000450066 XDHP47989 1333 aa17.06■□□□□ 0.32
USP39-207ENST00000450066 SEMA3EO15041 775 aa17.06■□□□□ 0.32
USP39-207ENST00000450066 ZBTB22O15209 634 aa17.06■□□□□ 0.32
USP39-207ENST00000450066 HSPD1P10809 573 aaKnown RBP17.06■□□□□ 0.32
USP39-207ENST00000450066 PDE6AP16499 860 aa17.06■□□□□ 0.32
USP39-207ENST00000450066 MAP3K12Q12852 859 aa17.06■□□□□ 0.32
USP39-207ENST00000450066 ANKIB1Q9P2G1 1089 aa17.06■□□□□ 0.32
USP39-207ENST00000450066 QSER1Q2KHR3 1735 aa17.06■□□□□ 0.32
USP39-207ENST00000450066 HSP90AA1P07900 732 aaKnown RBP17.06■□□□□ 0.32
USP39-207ENST00000450066 CASTP20810 708 aaKnown RBP17.06■□□□□ 0.32
USP39-207ENST00000450066 ADCK5Q3MIX3 580 aa17.06■□□□□ 0.32
USP39-207ENST00000450066 VPS53Q5VIR6 699 aa17.06■□□□□ 0.32
USP39-207ENST00000450066 JAKMIP1Q96N16 626 aaKnown RBP17.06■□□□□ 0.32
USP39-207ENST00000450066 PUS7LQ9H0K6 701 aaKnown RBP17.06■□□□□ 0.32
USP39-207ENST00000450066 ZSWIM6Q9HCJ5 1215 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms