RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	PIBF1	Q8WXW3	757 aa		19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	STRN4	Q9NRL3	753 aa		19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	CFAP45	Q9UL16	551 aa		19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	MYH7	P12883	1935 aa		19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	PTPDC1	A2A3K4	754 aa		19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	RRP9	O43818	475 aa	Known RBP	19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	ADD1	P35611	737 aa	Known RBP	19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	CCDC158	Q5M9N0	1113 aa		19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	ZNF274	Q96GC6	653 aa	Predicted RBP	19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	XAGE2	Q96GT9	111 aa		19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	TEX13A	Q9BXU3	409 aa	Predicted RBP	19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	ITGB4	P16144	1822 aa		19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	ADORA1	P30542	326 aa		19.94	■□□□□ 0.78
TOM1-210	ENST00000449058	LRRFIP1	Q32MZ4	808 aa	Known RBP	19.94	■□□□□ 0.78
TOM1-210	ENST00000449058	MPND	Q8N594	471 aa		19.94	■□□□□ 0.78
TOM1-210	ENST00000449058	ZNF830	Q96NB3	372 aa	Predicted RBP	19.94	■□□□□ 0.78
TOM1-210	ENST00000449058	ABCC12	Q96J65	1359 aa		19.94	■□□□□ 0.78
TOM1-210	ENST00000449058	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	19.94	■□□□□ 0.78
TOM1-210	ENST00000449058	ZFY	P08048	801 aa	Predicted RBP	19.94	■□□□□ 0.78
TOM1-210	ENST00000449058	TTC12	Q9H892	705 aa	Predicted RBP	19.94	■□□□□ 0.78
TOM1-210	ENST00000449058	KIF3A	Q9Y496	699 aa		19.94	■□□□□ 0.78
TOM1-210	ENST00000449058	STRC	Q7RTU9	1775 aa		19.94	■□□□□ 0.78
TOM1-210	ENST00000449058	DDX60	Q8IY21	1712 aa	Known RBP	19.94	■□□□□ 0.78
TOM1-210	ENST00000449058	FOXP2	O15409	715 aa		19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	NR1I2	O75469	434 aa		19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	PDIA3	P30101	505 aa	Known RBP	19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	EVC	P57679	992 aa		19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	EVA1C	P58658	441 aa		19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	FKBP4	Q02790	459 aa	Known RBP eCLIP	19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	TTC39A	Q5SRH9	613 aa		19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	DNAJC10	Q8IXB1	793 aa		19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	TTLL5	Q6EMB2	1281 aa		19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	KIF6	Q6ZMV9	814 aa		19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	CKAP2L	Q8IYA6	745 aa		19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	FAM89A	Q96GI7	184 aa		19.93	■□□□□ 0.78
TOM1-210	ENST00000449058	BICD2	Q8TD16	824 aa		19.92	■□□□□ 0.78
TOM1-210	ENST00000449058	ASAP1	Q9ULH1	1129 aa		19.92	■□□□□ 0.78
TOM1-210	ENST00000449058	RIC1	Q4ADV7	1423 aa		19.92	■□□□□ 0.78
TOM1-210	ENST00000449058	NHSL1	Q5SYE7	1610 aa		19.92	■□□□□ 0.78
TOM1-210	ENST00000449058	ANKRD36C	Q5JPF3	1778 aa		19.92	■□□□□ 0.78
TOM1-210	ENST00000449058	CCT2	P78371	535 aa	Known RBP	19.92	■□□□□ 0.78
TOM1-210	ENST00000449058	GORAB	Q5T7V8	394 aa		19.92	■□□□□ 0.78
TOM1-210	ENST00000449058	PIGB	Q92521	554 aa		19.92	■□□□□ 0.78
TOM1-210	ENST00000449058	CHMP4C	Q96CF2	233 aa		19.92	■□□□□ 0.78
TOM1-210	ENST00000449058	CTNNA3	Q9UI47	895 aa		19.92	■□□□□ 0.78
TOM1-210	ENST00000449058	RCOR1	Q9UKL0	485 aa		19.92	■□□□□ 0.78
TOM1-210	ENST00000449058	CDHR2	Q9BYE9	1310 aa		19.91	■□□□□ 0.78
TOM1-210	ENST00000449058	PLCB2	Q00722	1185 aa		19.91	■□□□□ 0.78
TOM1-210	ENST00000449058	SCARF1	Q14162	830 aa		19.91	■□□□□ 0.78
TOM1-210	ENST00000449058	SASS6	Q6UVJ0	657 aa		19.91	■□□□□ 0.78
TOM1-210	ENST00000449058	NCOA5	Q9HCD5	579 aa	Known RBP	19.91	■□□□□ 0.78
TOM1-210	ENST00000449058	ZNF330	Q9Y3S2	320 aa	Predicted RBP	19.91	■□□□□ 0.78
TOM1-210	ENST00000449058	MAP3K15	Q6ZN16	1313 aa		19.91	■□□□□ 0.78
TOM1-210	ENST00000449058	AKAP11	Q9UKA4	1901 aa		19.91	■□□□□ 0.78
TOM1-210	ENST00000449058	IFIT5	Q13325	482 aa	Known RBP	19.91	■□□□□ 0.78
TOM1-210	ENST00000449058	ANO6	Q4KMQ2	910 aa		19.91	■□□□□ 0.78
TOM1-210	ENST00000449058	ATL3	Q6DD88	541 aa		19.91	■□□□□ 0.78
TOM1-210	ENST00000449058	MYH3	P11055	1940 aa		19.9	■□□□□ 0.78
TOM1-210	ENST00000449058	TPM3	P06753	285 aa		19.9	■□□□□ 0.78
TOM1-210	ENST00000449058	HSP90AA2P	Q14568	343 aa	Predicted RBP	19.9	■□□□□ 0.78
TOM1-210	ENST00000449058	NOLC1	Q14978	699 aa	Known RBP eCLIP	19.9	■□□□□ 0.78	7e-7	■■■■□ 23.8
TOM1-210	ENST00000449058	GIGYF2	Q6Y7W6	1299 aa	Known RBP	19.9	■□□□□ 0.78
TOM1-210	ENST00000449058	CBX8	Q9HC52	389 aa		19.9	■□□□□ 0.78
TOM1-210	ENST00000449058	SPTLC3	Q9NUV7	552 aa		19.9	■□□□□ 0.78
TOM1-210	ENST00000449058	STARD3NL	O95772	234 aa		19.9	■□□□□ 0.78
TOM1-210	ENST00000449058	CHST3	Q7LGC8	479 aa		19.9	■□□□□ 0.78
TOM1-210	ENST00000449058	LUZP1	Q86V48	1076 aa		19.9	■□□□□ 0.78
TOM1-210	ENST00000449058	ZAP70	P43403	619 aa		19.89	■□□□□ 0.77
TOM1-210	ENST00000449058	TAF7L	Q5H9L4	462 aa		19.89	■□□□□ 0.77
TOM1-210	ENST00000449058	APPBP2	Q92624	585 aa		19.89	■□□□□ 0.77
TOM1-210	ENST00000449058	LRP6	O75581	1613 aa		19.89	■□□□□ 0.77
TOM1-210	ENST00000449058	WASHC4	Q2M389	1173 aa		19.88	■□□□□ 0.77
TOM1-210	ENST00000449058	CCDC85A	Q96PX6	553 aa	Predicted RBP	19.88	■□□□□ 0.77
TOM1-210	ENST00000449058	RIPOR2	Q9Y4F9	1068 aa		19.88	■□□□□ 0.77
TOM1-210	ENST00000449058	CARMIL3	Q8ND23	1372 aa		19.88	■□□□□ 0.77
TOM1-210	ENST00000449058	UQCRHL	A0A096LP55	91 aa		19.88	■□□□□ 0.77
TOM1-210	ENST00000449058	UQCRH	P07919	91 aa		19.88	■□□□□ 0.77
TOM1-210	ENST00000449058	IMMT	Q16891	758 aa	Known RBP	19.88	■□□□□ 0.77
TOM1-210	ENST00000449058	FGA	P02671	866 aa		19.87	■□□□□ 0.77
TOM1-210	ENST00000449058	NLRP10	Q86W26	655 aa		19.87	■□□□□ 0.77
TOM1-210	ENST00000449058	TDRD7	Q8NHU6	1098 aa	Known RBP	19.87	■□□□□ 0.77
TOM1-210	ENST00000449058	KCNF1	Q9H3M0	494 aa		19.87	■□□□□ 0.77
TOM1-210	ENST00000449058	FDPS	P14324	419 aa	Known RBP	19.87	■□□□□ 0.77
TOM1-210	ENST00000449058	ATP2B3	Q16720	1220 aa		19.87	■□□□□ 0.77
TOM1-210	ENST00000449058	ZNF396	Q96N95	335 aa	Predicted RBP	19.87	■□□□□ 0.77
TOM1-210	ENST00000449058	USP28	Q96RU2	1077 aa		19.87	■□□□□ 0.77
TOM1-210	ENST00000449058	GOLGA6L6	A8MZA4	724 aa		19.86	■□□□□ 0.77
TOM1-210	ENST00000449058	FOSB	P53539	338 aa		19.86	■□□□□ 0.77
TOM1-210	ENST00000449058	HLF	Q16534	295 aa		19.86	■□□□□ 0.77
TOM1-210	ENST00000449058	ILDR1	Q86SU0	546 aa	Predicted RBP	19.86	■□□□□ 0.77
TOM1-210	ENST00000449058	MB21D2	Q8IYB1	491 aa	Predicted RBP	19.86	■□□□□ 0.77
TOM1-210	ENST00000449058	SYNE4	Q8N205	404 aa		19.86	■□□□□ 0.77
TOM1-210	ENST00000449058	TTLL11	Q8NHH1	800 aa		19.86	■□□□□ 0.77
TOM1-210	ENST00000449058	FTO	Q9C0B1	505 aa	Known RBP eCLIP	19.86	■□□□□ 0.77	3e-7	■■■■■ 35.2
TOM1-210	ENST00000449058	PUS7L	Q9H0K6	701 aa	Known RBP	19.86	■□□□□ 0.77
TOM1-210	ENST00000449058	CAVIN2	O95810	425 aa		19.86	■□□□□ 0.77
TOM1-210	ENST00000449058	CEBPZ	Q03701	1054 aa	Known RBP	19.86	■□□□□ 0.77
TOM1-210	ENST00000449058	ZNF512B	Q96KM6	892 aa	Predicted RBP	19.86	■□□□□ 0.77
TOM1-210	ENST00000449058	GPHN	Q9NQX3	736 aa	Predicted RBP	19.86	■□□□□ 0.77

Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms