RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 ILDR1Q86SU0 546 aaPredicted RBP9.74□□□□□ -0.85
CCDC39-201ENST00000442201 KBTBD3Q8NAB2 608 aa9.74□□□□□ -0.85
CCDC39-201ENST00000442201 ZNF512BQ96KM6 892 aaPredicted RBP9.74□□□□□ -0.85
CCDC39-201ENST00000442201 PARP3Q9Y6F1 533 aa9.74□□□□□ -0.85
CCDC39-201ENST00000442201 UQCRFS1P1P0C7P4 283 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 NCLP19338 710 aaKnown RBP9.73□□□□□ -0.85
CCDC39-201ENST00000442201 FKBP4Q02790 459 aaKnown RBP eCLIP9.73□□□□□ -0.85
CCDC39-201ENST00000442201 GRAPQ13588 217 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 CRY2Q49AN0 593 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 CCDC102BQ68D86 513 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 KIAA1211Q6ZU35 1233 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 TICAM2Q86XR7 235 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 CCDC125Q86Z20 511 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 GRAPLQ8TC17 118 aaPredicted RBP9.73□□□□□ -0.85
CCDC39-201ENST00000442201 TUBGCP6Q96RT7 1819 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 SNAP23O00161 211 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 EPB41L2O43491 1005 aaKnown RBP9.73□□□□□ -0.85
CCDC39-201ENST00000442201 UBE4AQ14139 1066 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 RFX7Q2KHR2 1363 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 ANKRD2Q9GZV1 360 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 MSL1Q68DK7 614 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 TEX2Q8IWB9 1127 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 BRIP1Q9BX63 1249 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 SNRKQ9NRH2 765 aa9.73□□□□□ -0.85
CCDC39-201ENST00000442201 RAD50Q92878 1312 aa9.72□□□□□ -0.85
CCDC39-201ENST00000442201 MCCP23508 829 aa9.72□□□□□ -0.85
CCDC39-201ENST00000442201 PHKA1P46020 1223 aa9.72□□□□□ -0.85
CCDC39-201ENST00000442201 NMIQ13287 307 aaPredicted RBP9.72□□□□□ -0.85
CCDC39-201ENST00000442201 RBM17Q96I25 401 aaKnown RBP9.72□□□□□ -0.85
CCDC39-201ENST00000442201 IL25Q9H293 177 aa9.72□□□□□ -0.85
CCDC39-201ENST00000442201 KCNJ4P48050 445 aa9.72□□□□□ -0.85
CCDC39-201ENST00000442201 SCARF1Q14162 830 aa9.72□□□□□ -0.85
CCDC39-201ENST00000442201 LRRFIP1Q32MZ4 808 aaKnown RBP9.72□□□□□ -0.85
CCDC39-201ENST00000442201 FAM227BQ96M60 508 aa9.72□□□□□ -0.85
CCDC39-201ENST00000442201 KLRG2A4D1S0 409 aaPredicted RBP9.71□□□□□ -0.85
CCDC39-201ENST00000442201 ARID4AP29374 1257 aaPredicted RBP9.71□□□□□ -0.85
CCDC39-201ENST00000442201 ZAP70P43403 619 aa9.71□□□□□ -0.85
CCDC39-201ENST00000442201 HOXA10P31260 410 aaPredicted RBP9.71□□□□□ -0.86
CCDC39-201ENST00000442201 MCAMP43121 646 aa9.71□□□□□ -0.86
CCDC39-201ENST00000442201 BECN1Q14457 450 aa9.71□□□□□ -0.86
CCDC39-201ENST00000442201 L1TD1Q5T7N2 865 aaKnown RBP9.71□□□□□ -0.86
CCDC39-201ENST00000442201 COL4A1P02462 1669 aa9.71□□□□□ -0.86
CCDC39-201ENST00000442201 A0A0D9SFI3 127 aa9.71□□□□□ -0.86
CCDC39-201ENST00000442201 CRAMP1Q96RY5 1269 aa9.71□□□□□ -0.86
CCDC39-201ENST00000442201 ANTXR1Q9H6X2 564 aa9.71□□□□□ -0.86
CCDC39-201ENST00000442201 TNRC6CQ9HCJ0 1690 aaKnown RBP9.71□□□□□ -0.86
CCDC39-201ENST00000442201 BBOX1O75936 387 aa9.7□□□□□ -0.86
CCDC39-201ENST00000442201 PDE6BP35913 854 aa9.7□□□□□ -0.86
CCDC39-201ENST00000442201 TTF1Q15361 905 aaPredicted RBP9.7□□□□□ -0.86
CCDC39-201ENST00000442201 CAVIN4Q5BKX8 364 aa9.7□□□□□ -0.86
CCDC39-201ENST00000442201 PI16Q6UXB8 463 aa9.7□□□□□ -0.86
CCDC39-201ENST00000442201 BCAMP50895 628 aa9.7□□□□□ -0.86
CCDC39-201ENST00000442201 MAP7D2Q96T17 732 aa9.7□□□□□ -0.86
CCDC39-201ENST00000442201 KIF2CQ99661 725 aa9.7□□□□□ -0.86
CCDC39-201ENST00000442201 LSG1Q9H089 658 aaKnown RBP9.7□□□□□ -0.86
CCDC39-201ENST00000442201 GNL3LQ9NVN8 582 aaKnown RBP9.7□□□□□ -0.86
CCDC39-201ENST00000442201 ZFYP08048 801 aaPredicted RBP9.69□□□□□ -0.86
CCDC39-201ENST00000442201 VPS37DQ86XT2 251 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 TMEM51Q9NW97 253 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 HMG20BQ9P0W2 317 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 RNF113AO15541 343 aaKnown RBP9.69□□□□□ -0.86
CCDC39-201ENST00000442201 RASGRF1Q13972 1273 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 SPATA5Q8NB90 893 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.69□□□□□ -0.86
CCDC39-201ENST00000442201 ANKIB1Q9P2G1 1089 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 ZNF804BA4D1E1 1349 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 CYP2E1P05181 493 aaPredicted RBP9.69□□□□□ -0.86
CCDC39-201ENST00000442201 ANAPC15P60006 121 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 RABEP1Q15276 862 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 MCMDC2Q4G0Z9 681 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 TMC4Q7Z404 712 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 LEMD3Q9Y2U8 911 aa9.69□□□□□ -0.86
CCDC39-201ENST00000442201 XDHP47989 1333 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 CCDC171Q6TFL3 1326 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 WTIPA6NIX2 430 aaPredicted RBP9.68□□□□□ -0.86
CCDC39-201ENST00000442201 SRGNP10124 158 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 NPR1P16066 1061 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 GYG1P46976 350 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 ZSCAN25Q6NSZ9 544 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 HELLSQ9NRZ9 838 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 MED23Q9ULK4 1368 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 HSPA4P34932 840 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 ZMYM1Q5SVZ6 1142 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 SLC16A10Q8TF71 515 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 FAM84BQ96KN1 310 aaPredicted RBP9.68□□□□□ -0.86
CCDC39-201ENST00000442201 AK9Q5TCS8 1911 aa9.68□□□□□ -0.86
CCDC39-201ENST00000442201 SPEF2Q9C093 1822 aa9.67□□□□□ -0.86
CCDC39-201ENST00000442201 IDH1O75874 414 aaKnown RBP9.67□□□□□ -0.86
CCDC39-201ENST00000442201 CHGBP05060 677 aa9.67□□□□□ -0.86
CCDC39-201ENST00000442201 PTH1RQ03431 593 aa9.67□□□□□ -0.86
CCDC39-201ENST00000442201 ZNF589Q86UQ0 364 aaPredicted RBP9.67□□□□□ -0.86
CCDC39-201ENST00000442201 SEC62Q99442 399 aaKnown RBP9.67□□□□□ -0.86
CCDC39-201ENST00000442201 ALDH1B1P30837 517 aa9.67□□□□□ -0.86
CCDC39-201ENST00000442201 FBXO33Q7Z6M2 555 aa9.67□□□□□ -0.86
CCDC39-201ENST00000442201 ZFP91Q96JP5 570 aaPredicted RBP9.67□□□□□ -0.86
CCDC39-201ENST00000442201 PIH1D3Q9NQM4 214 aaKnown RBP9.67□□□□□ -0.86
CCDC39-201ENST00000442201 NSFL1CQ9UNZ2 370 aaKnown RBP9.67□□□□□ -0.86
CCDC39-201ENST00000442201 FRAT2O75474 233 aaPredicted RBP9.67□□□□□ -0.86
CCDC39-201ENST00000442201 HIBADHP31937 336 aaKnown RBP9.67□□□□□ -0.86
CCDC39-201ENST00000442201 SLC4A3P48751 1232 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms