RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 DNAI1Q9UI46 699 aa23.64■■□□□ 1.37
SHOX2-203ENST00000441443 SEC31AO94979 1220 aaKnown RBP23.63■■□□□ 1.37
SHOX2-203ENST00000441443 MYL6BP14649 208 aa23.63■■□□□ 1.37
SHOX2-203ENST00000441443 SFPQP23246 707 aaKnown RBP eCLIP23.63■■□□□ 1.37
SHOX2-203ENST00000441443 MED23Q9ULK4 1368 aa23.63■■□□□ 1.37
SHOX2-203ENST00000441443 HMG20BQ9P0W2 317 aa23.63■■□□□ 1.37
SHOX2-203ENST00000441443 DBF4Q9UBU7 674 aaPredicted RBP23.63■■□□□ 1.37
SHOX2-203ENST00000441443 NDUFB9Q9Y6M9 179 aa23.63■■□□□ 1.37
SHOX2-203ENST00000441443 PXDNQ92626 1479 aa23.63■■□□□ 1.37
SHOX2-203ENST00000441443 FAM193AP78312 1265 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 DPCR1Q3MIW9 517 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 TMCO3Q6UWJ1 677 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 UBXN4Q92575 508 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 NAT10Q9H0A0 1025 aaKnown RBP23.62■■□□□ 1.37
SHOX2-203ENST00000441443 SNRKQ9NRH2 765 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 G3BP1Q13283 466 aaKnown RBP eCLIP23.62■■□□□ 1.37
SHOX2-203ENST00000441443 CCDC129Q6ZRS4 1044 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 KLHDC4Q8TBB5 520 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 RAPGEF4Q8WZA2 1011 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 TRIM34Q9BYJ4 488 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 SEC62Q99442 399 aaKnown RBP23.62■■□□□ 1.37
SHOX2-203ENST00000441443 EPC1Q9H2F5 836 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 LRRC37A3O60309 1634 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 RGPD2P0DJD1 1756 aa23.62■■□□□ 1.37
SHOX2-203ENST00000441443 A0A1B0GVL5 298 aa23.61■■□□□ 1.37
SHOX2-203ENST00000441443 BIN1O00499 593 aa23.61■■□□□ 1.37
SHOX2-203ENST00000441443 CREBRFQ8IUR6 639 aa23.61■■□□□ 1.37
SHOX2-203ENST00000441443 ZCCHC17Q9NP64 241 aaKnown RBP23.61■■□□□ 1.37
SHOX2-203ENST00000441443 IMPACTQ9P2X3 320 aa23.61■■□□□ 1.37
SHOX2-203ENST00000441443 ATF3P18847 181 aa23.61■■□□□ 1.37
SHOX2-203ENST00000441443 IPO4Q8TEX9 1081 aaKnown RBP23.61■■□□□ 1.37
SHOX2-203ENST00000441443 NFAT5O94916 1531 aa23.61■■□□□ 1.37
SHOX2-203ENST00000441443 ZRANB2O95218 330 aaKnown RBP eCLIP23.6■■□□□ 1.37
SHOX2-203ENST00000441443 ORC3Q9UBD5 711 aaPredicted RBP23.6■■□□□ 1.37
SHOX2-203ENST00000441443 RAD51AP2Q09MP3 1159 aa23.6■■□□□ 1.37
SHOX2-203ENST00000441443 TSGA10IPQ3SY00 556 aa23.6■■□□□ 1.37
SHOX2-203ENST00000441443 PSDA5PKW4 1024 aaPredicted RBP23.59■■□□□ 1.37
SHOX2-203ENST00000441443 CCT2P78371 535 aaKnown RBP23.59■■□□□ 1.37
SHOX2-203ENST00000441443 ST5P78524 1137 aa23.59■■□□□ 1.37
SHOX2-203ENST00000441443 COL15A1P39059 1388 aa23.59■■□□□ 1.37
SHOX2-203ENST00000441443 CCDC150Q8NCX0 1101 aa23.59■■□□□ 1.37
SHOX2-203ENST00000441443 NSUN7Q8NE18 718 aaKnown RBP23.59■■□□□ 1.37
SHOX2-203ENST00000441443 MNS1Q8NEH6 495 aa23.59■■□□□ 1.37
SHOX2-203ENST00000441443 SUCLG2Q96I99 432 aa23.59■■□□□ 1.37
SHOX2-203ENST00000441443 URI1O94763 535 aaPredicted RBP23.58■■□□□ 1.37
SHOX2-203ENST00000441443 ZRSR1Q15695 479 aaKnown RBP23.58■■□□□ 1.37
SHOX2-203ENST00000441443 ARGLU1Q9NWB6 273 aaPredicted RBP23.58■■□□□ 1.37
SHOX2-203ENST00000441443 PTPDC1A2A3K4 754 aa23.58■■□□□ 1.37
SHOX2-203ENST00000441443 CYP21A2P08686 494 aa23.58■■□□□ 1.37
SHOX2-203ENST00000441443 ETF1P62495 437 aaKnown RBP23.58■■□□□ 1.37
SHOX2-203ENST00000441443 KRT32Q14532 448 aa23.58■■□□□ 1.37
SHOX2-203ENST00000441443 NFATC2IPQ8NCF5 419 aa23.58■■□□□ 1.37
SHOX2-203ENST00000441443 BICC1Q9H694 974 aaKnown RBP23.58■■□□□ 1.37
SHOX2-203ENST00000441443 C19orf44Q9H6X5 657 aa23.58■■□□□ 1.37
SHOX2-203ENST00000441443 NCOA5Q9HCD5 579 aaKnown RBP23.58■■□□□ 1.37
SHOX2-203ENST00000441443 CTDNEP1O95476 244 aa23.57■■□□□ 1.36
SHOX2-203ENST00000441443 TEX35Q5T0J7 233 aa23.57■■□□□ 1.36
SHOX2-203ENST00000441443 SMARCC2Q8TAQ2 1214 aa23.57■■□□□ 1.36
SHOX2-203ENST00000441443 PCDHA7Q9UN72 937 aa23.57■■□□□ 1.36
SHOX2-203ENST00000441443 SLC20A2Q08357 652 aa23.57■■□□□ 1.36
SHOX2-203ENST00000441443 ISM2Q6H9L7 571 aa23.57■■□□□ 1.36
SHOX2-203ENST00000441443 CARD6Q9BX69 1037 aa23.57■■□□□ 1.36
SHOX2-203ENST00000441443 FEZ2Q9UHY8 353 aaPredicted RBP23.57■■□□□ 1.36
SHOX2-203ENST00000441443 FANCGO15287 622 aa23.57■■□□□ 1.36
SHOX2-203ENST00000441443 NDUFA8P51970 172 aa23.57■■□□□ 1.36
SHOX2-203ENST00000441443 APOBRQ0VD83 1088 aa23.57■■□□□ 1.36
SHOX2-203ENST00000441443 FMR1NBQ8N0W7 255 aaPredicted RBP23.57■■□□□ 1.36
SHOX2-203ENST00000441443 FAM177A1Q8N128 213 aaPredicted RBP23.57■■□□□ 1.36
SHOX2-203ENST00000441443 SMARCE1Q969G3 411 aa23.56■■□□□ 1.36
SHOX2-203ENST00000441443 KAZALD1Q96I82 304 aa23.56■■□□□ 1.36
SHOX2-203ENST00000441443 ZNF396Q96N95 335 aaPredicted RBP23.56■■□□□ 1.36
SHOX2-203ENST00000441443 PTPN21Q16825 1174 aa23.56■■□□□ 1.36
SHOX2-203ENST00000441443 USPL1Q5W0Q7 1092 aa23.56■■□□□ 1.36
SHOX2-203ENST00000441443 NAA16Q6N069 864 aaPredicted RBP23.56■■□□□ 1.36
SHOX2-203ENST00000441443 ILDR1Q86SU0 546 aaPredicted RBP23.56■■□□□ 1.36
SHOX2-203ENST00000441443 LMOD1P29536 600 aaPredicted RBP23.55■■□□□ 1.36
SHOX2-203ENST00000441443 MRPS27Q92552 414 aaKnown RBP23.55■■□□□ 1.36
SHOX2-203ENST00000441443 TPM4P67936 248 aa23.55■■□□□ 1.36
SHOX2-203ENST00000441443 RIC3Q7Z5B4 369 aa23.55■■□□□ 1.36
SHOX2-203ENST00000441443 KIAA1468Q9P260 1216 aa23.55■■□□□ 1.36
SHOX2-203ENST00000441443 ALDH1L1O75891 902 aa23.54■■□□□ 1.36
SHOX2-203ENST00000441443 SASH3O75995 380 aa23.54■■□□□ 1.36
SHOX2-203ENST00000441443 GOLGA8FQ08AF8 430 aa23.54■■□□□ 1.36
SHOX2-203ENST00000441443 GOLGA8DPQ0D2H9 430 aa23.54■■□□□ 1.36
SHOX2-203ENST00000441443 KRBA2Q6ZNG9 492 aa23.54■■□□□ 1.36
SHOX2-203ENST00000441443 CCDC34Q96HJ3 373 aa23.54■■□□□ 1.36
SHOX2-203ENST00000441443 NRDCO43847 1150 aa23.54■■□□□ 1.36
SHOX2-203ENST00000441443 HOXB7P09629 217 aa23.54■■□□□ 1.36
SHOX2-203ENST00000441443 KSR2Q6VAB6 950 aa23.54■■□□□ 1.36
SHOX2-203ENST00000441443 STOX1Q6ZVD7 989 aa23.54■■□□□ 1.36
SHOX2-203ENST00000441443 PFKFB2O60825 505 aa23.53■■□□□ 1.36
SHOX2-203ENST00000441443 HSPA2P54652 639 aa23.53■■□□□ 1.36
SHOX2-203ENST00000441443 TADA3O75528 432 aa23.53■■□□□ 1.36
SHOX2-203ENST00000441443 OAS2P29728 719 aaKnown RBP23.53■■□□□ 1.36
SHOX2-203ENST00000441443 TRIM65Q6PJ69 517 aa23.53■■□□□ 1.36
SHOX2-203ENST00000441443 TMX1Q9H3N1 280 aa23.53■■□□□ 1.36
SHOX2-203ENST00000441443 ATP1A3P13637 1013 aa23.52■■□□□ 1.36
SHOX2-203ENST00000441443 JCADQ9P266 1359 aa23.52■■□□□ 1.36
SHOX2-203ENST00000441443 GYS2P54840 703 aa23.52■■□□□ 1.36
SHOX2-203ENST00000441443 UTP14AQ9BVJ6 771 aaKnown RBP23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms