RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CEP85Q6P2H3 762 aa19.58■□□□□ 0.72
PTPRF-209ENST00000438120 CCDC186Q7Z3E2 898 aa19.58■□□□□ 0.72
PTPRF-209ENST00000438120 AK2P54819 239 aa19.58■□□□□ 0.72
PTPRF-209ENST00000438120 DPH6Q7L8W6 267 aa19.58■□□□□ 0.72
PTPRF-209ENST00000438120 HOMER2Q9NSB8 354 aa19.58■□□□□ 0.72
PTPRF-209ENST00000438120 TFCP2L1Q9NZI6 479 aa19.58■□□□□ 0.72
PTPRF-209ENST00000438120 MCM7P33993 719 aa19.57■□□□□ 0.72
PTPRF-209ENST00000438120 STX17P56962 302 aa19.57■□□□□ 0.72
PTPRF-209ENST00000438120 UVSSAQ2YD98 709 aa19.57■□□□□ 0.72
PTPRF-209ENST00000438120 LINS1Q8NG48 757 aa19.57■□□□□ 0.72
PTPRF-209ENST00000438120 BICC1Q9H694 974 aaKnown RBP19.57■□□□□ 0.72
PTPRF-209ENST00000438120 SKILP12757 684 aa19.57■□□□□ 0.72
PTPRF-209ENST00000438120 KIAA0753Q2KHM9 967 aa19.57■□□□□ 0.72
PTPRF-209ENST00000438120 FSD2A1L4K1 749 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 GOLGA6L9A6NEM1 432 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 ZC3H12CQ9C0D7 883 aaKnown RBP19.56■□□□□ 0.72
PTPRF-209ENST00000438120 LAMC3Q9Y6N6 1575 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 RIMS2Q9UQ26 1411 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 CCDC175P0C221 793 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 LMOD1P29536 600 aaPredicted RBP19.56■□□□□ 0.72
PTPRF-209ENST00000438120 FAM212AQ96EL1 285 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 MPHOSPH6Q99547 160 aaKnown RBP19.56■□□□□ 0.72
PTPRF-209ENST00000438120 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.56■□□□□ 0.72
PTPRF-209ENST00000438120 KRT13P13646 458 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 TPTE2Q6XPS3 522 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 EYA1Q99502 592 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 TCHPQ9BT92 498 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 GPATCH8Q9UKJ3 1502 aaKnown RBP19.56■□□□□ 0.72
PTPRF-209ENST00000438120 PKNOX2Q96KN3 472 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 CREB3L3Q68CJ9 461 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 DNAI1Q9UI46 699 aa19.56■□□□□ 0.72
PTPRF-209ENST00000438120 VAMP4O75379 141 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 ZNF354CQ86Y25 554 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 UHRF1BP1LA0JNW5 1464 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 RTL1A6NKG5 1358 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 TMEM110-MUSTN1A8MSY1 372 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 SPTLC2O15270 562 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 ACTN2P35609 894 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 GNAQP50148 359 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 SP4Q02446 784 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 RTCBQ9Y3I0 505 aaKnown RBP19.55■□□□□ 0.72
PTPRF-209ENST00000438120 TRIM75PA6NK02 468 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 C6orf50Q9HD87 102 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 POTEB2H3BUK9 544 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 TOM1O60784 492 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 CPA1P15085 419 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 HSPA2P54652 639 aa19.55■□□□□ 0.72
PTPRF-209ENST00000438120 RRP36Q96EU6 259 aaKnown RBP19.54■□□□□ 0.72
PTPRF-209ENST00000438120 PSMA7O14818 248 aa19.54■□□□□ 0.72
PTPRF-209ENST00000438120 BMP15O95972 392 aa19.54■□□□□ 0.72
PTPRF-209ENST00000438120 NF2P35240 595 aa19.54■□□□□ 0.72
PTPRF-209ENST00000438120 STAMBPO95630 424 aa19.54■□□□□ 0.72
PTPRF-209ENST00000438120 NYXQ9GZU5 481 aa19.54■□□□□ 0.72
PTPRF-209ENST00000438120 SPDYE3A6NKU9 549 aa19.54■□□□□ 0.72
PTPRF-209ENST00000438120 ATP2C2O75185 946 aa19.54■□□□□ 0.72
PTPRF-209ENST00000438120 CTAGE1Q96RT6 745 aa19.54■□□□□ 0.72
PTPRF-209ENST00000438120 SAP30BPQ9UHR5 308 aaKnown RBP19.53■□□□□ 0.72
PTPRF-209ENST00000438120 KRT2P35908 639 aa19.53■□□□□ 0.72
PTPRF-209ENST00000438120 SERPINA10Q9UK55 444 aa19.53■□□□□ 0.72
PTPRF-209ENST00000438120 PTPDC1A2A3K4 754 aa19.53■□□□□ 0.72
PTPRF-209ENST00000438120 CYLC1P35663 651 aaPredicted RBP19.53■□□□□ 0.72
PTPRF-209ENST00000438120 CAVIN2O95810 425 aa19.53■□□□□ 0.72
PTPRF-209ENST00000438120 SYT1P21579 422 aa19.53■□□□□ 0.72
PTPRF-209ENST00000438120 FAM200AQ8TCP9 573 aa19.53■□□□□ 0.72
PTPRF-209ENST00000438120 FLT4P35916 1363 aa19.52■□□□□ 0.72
PTPRF-209ENST00000438120 GCP02774 474 aa19.52■□□□□ 0.72
PTPRF-209ENST00000438120 MAP3K5Q99683 1374 aa19.52■□□□□ 0.72
PTPRF-209ENST00000438120 CCDC172P0C7W6 258 aa19.52■□□□□ 0.72
PTPRF-209ENST00000438120 IFI16Q16666 785 aaKnown RBP19.52■□□□□ 0.72
PTPRF-209ENST00000438120 FAM89AQ96GI7 184 aa19.52■□□□□ 0.72
PTPRF-209ENST00000438120 PKD2L1Q9P0L9 805 aa19.52■□□□□ 0.72
PTPRF-209ENST00000438120 IKBKGQ9Y6K9 419 aa19.52■□□□□ 0.72
PTPRF-209ENST00000438120 TICAM2Q86XR7 235 aa19.52■□□□□ 0.71
PTPRF-209ENST00000438120 EHBP1Q8NDI1 1231 aa19.52■□□□□ 0.71
PTPRF-209ENST00000438120 PARP3Q9Y6F1 533 aa19.52■□□□□ 0.71
PTPRF-209ENST00000438120 C8orf34Q49A92 452 aa19.51■□□□□ 0.71
PTPRF-209ENST00000438120 CCDC129Q6ZRS4 1044 aa19.51■□□□□ 0.71
PTPRF-209ENST00000438120 URB2Q14146 1524 aaKnown RBP19.51■□□□□ 0.71
PTPRF-209ENST00000438120 LDHBP07195 334 aaKnown RBP19.51■□□□□ 0.71
PTPRF-209ENST00000438120 TTC41PQ6P2S7 1318 aa19.51■□□□□ 0.71
PTPRF-209ENST00000438120 KRT79Q5XKE5 535 aa19.51■□□□□ 0.71
PTPRF-209ENST00000438120 DCTPP1Q9H773 170 aa19.51■□□□□ 0.71
PTPRF-209ENST00000438120 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.51■□□□□ 0.719e-7■■□□□ 12
PTPRF-209ENST00000438120 V9GYY5 206 aaPredicted RBP19.51■□□□□ 0.71
PTPRF-209ENST00000438120 PAIP2Q9BPZ3 127 aaKnown RBP19.51■□□□□ 0.71
PTPRF-209ENST00000438120 PLCH2O75038 1416 aa19.51■□□□□ 0.71
PTPRF-209ENST00000438120 RNMTO43148 476 aaKnown RBP19.5■□□□□ 0.71
PTPRF-209ENST00000438120 G2E3Q7L622 706 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 PPP1R14CQ8TAE6 165 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 TTC12Q9H892 705 aaPredicted RBP19.5■□□□□ 0.71
PTPRF-209ENST00000438120 WDR7Q9Y4E6 1490 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 RTL9Q8NET4 1388 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 HSF2BPO75031 334 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 CEP112Q8N8E3 955 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.5■□□□□ 0.716e-6■■□□□ 12.8
PTPRF-209ENST00000438120 HOXC9P31274 260 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 FAM13AO94988 1023 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 MBD4O95243 580 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 GNAT2P19087 354 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 PRIM1P49642 420 aaKnown RBP19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms