RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 UBN2Q6ZU65 1347 aa11.28□□□□□ -0.6
CUX1-206ENST00000437600 SNAP23O00161 211 aa11.28□□□□□ -0.6
CUX1-206ENST00000437600 F13A1P00488 732 aa11.28□□□□□ -0.6
CUX1-206ENST00000437600 CAMK4Q16566 473 aa11.28□□□□□ -0.6
CUX1-206ENST00000437600 TTLL5Q6EMB2 1281 aa11.28□□□□□ -0.6
CUX1-206ENST00000437600 BICDL1Q6ZP65 573 aa11.28□□□□□ -0.6
CUX1-206ENST00000437600 CDC37L1Q7L3B6 337 aa11.28□□□□□ -0.6
CUX1-206ENST00000437600 SMARCC1Q92922 1105 aaPredicted RBP11.28□□□□□ -0.6
CUX1-206ENST00000437600 NUP98P52948 1817 aa11.28□□□□□ -0.6
CUX1-206ENST00000437600 CYP21A2P08686 494 aa11.27□□□□□ -0.6
CUX1-206ENST00000437600 ADORA1P30542 326 aa11.27□□□□□ -0.6
CUX1-206ENST00000437600 PAXIP1Q6ZW49 1069 aaPredicted RBP11.27□□□□□ -0.6
CUX1-206ENST00000437600 ZNF830Q96NB3 372 aaPredicted RBP11.27□□□□□ -0.6
CUX1-206ENST00000437600 SRP68Q9UHB9 627 aaKnown RBP11.27□□□□□ -0.6
CUX1-206ENST00000437600 MTMR6Q9Y217 621 aa11.27□□□□□ -0.6
CUX1-206ENST00000437600 NUP188Q5SRE5 1749 aa11.27□□□□□ -0.6
CUX1-206ENST00000437600 A0A1B0GUL7 405 aa11.27□□□□□ -0.61
CUX1-206ENST00000437600 EYA2O00167 538 aa11.27□□□□□ -0.61
CUX1-206ENST00000437600 RRP9O43818 475 aaKnown RBP11.27□□□□□ -0.61
CUX1-206ENST00000437600 APBA3O96018 575 aa11.27□□□□□ -0.61
CUX1-206ENST00000437600 TOB2Q14106 344 aaPredicted RBP11.27□□□□□ -0.61
CUX1-206ENST00000437600 RAB11FIP4Q86YS3 637 aa11.27□□□□□ -0.61
CUX1-206ENST00000437600 HELBQ8NG08 1087 aaPredicted RBP11.27□□□□□ -0.61
CUX1-206ENST00000437600 IRS4O14654 1257 aaPredicted RBP11.27□□□□□ -0.61
CUX1-206ENST00000437600 ATP5JP18859 108 aa11.27□□□□□ -0.61
CUX1-206ENST00000437600 CCT2P78371 535 aaKnown RBP11.27□□□□□ -0.61
CUX1-206ENST00000437600 PROM2Q8N271 834 aa11.27□□□□□ -0.61
CUX1-206ENST00000437600 CCDC24Q8N4L8 307 aa11.27□□□□□ -0.61
CUX1-206ENST00000437600 ZBTB38Q8NAP3 1195 aaPredicted RBP11.27□□□□□ -0.61
CUX1-206ENST00000437600 COL5A3P25940 1745 aaPredicted RBP11.27□□□□□ -0.61
CUX1-206ENST00000437600 KDM4AO75164 1064 aa11.26□□□□□ -0.61
CUX1-206ENST00000437600 HSP90B1P14625 803 aaKnown RBP11.26□□□□□ -0.61
CUX1-206ENST00000437600 ITGA6P23229 1130 aa11.26□□□□□ -0.61
CUX1-206ENST00000437600 EIF5P55010 431 aaKnown RBP11.26□□□□□ -0.61
CUX1-206ENST00000437600 HAND2P61296 217 aa11.26□□□□□ -0.61
CUX1-206ENST00000437600 IFIT5Q13325 482 aaKnown RBP11.26□□□□□ -0.61
CUX1-206ENST00000437600 TAF1LQ8IZX4 1826 aa11.26□□□□□ -0.61
CUX1-206ENST00000437600 CLCN1P35523 988 aa11.26□□□□□ -0.61
CUX1-206ENST00000437600 DHX37Q8IY37 1157 aaKnown RBP11.26□□□□□ -0.61
CUX1-206ENST00000437600 BRF1Q92994 677 aa11.26□□□□□ -0.61
CUX1-206ENST00000437600 GPHNQ9NQX3 736 aaPredicted RBP11.26□□□□□ -0.61
CUX1-206ENST00000437600 PCCAP05165 728 aaPredicted RBP11.25□□□□□ -0.61
CUX1-206ENST00000437600 GORABQ5T7V8 394 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 LDHAL6AQ6ZMR3 332 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 Q6ZUG5 572 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 CEP126Q9P2H0 1117 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 ISY1Q9ULR0 285 aaKnown RBP11.25□□□□□ -0.61
CUX1-206ENST00000437600 IL6STP40189 918 aaPredicted RBP11.25□□□□□ -0.61
CUX1-206ENST00000437600 IL15P40933 162 aaPredicted RBP11.25□□□□□ -0.61
CUX1-206ENST00000437600 CCDC173Q0VFZ6 552 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 SCARF1Q14162 830 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 STOX1Q6ZVD7 989 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 TTLL11Q8NHH1 800 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 NCOA5Q9HCD5 579 aaKnown RBP11.25□□□□□ -0.61
CUX1-206ENST00000437600 RPS6KB1P23443 525 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 GUCY1B3Q02153 619 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 SUSD4Q5VX71 490 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 NEK1Q96PY6 1258 aa11.25□□□□□ -0.61
CUX1-206ENST00000437600 LY75O60449 1722 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 MBD3O95983 291 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 IFIT1P09914 478 aaKnown RBP11.24□□□□□ -0.61
CUX1-206ENST00000437600 MCMDC2Q4G0Z9 681 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 RNF20Q5VTR2 975 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 IL17RAQ96F46 866 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 CNNM1Q9NRU3 951 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 PAG1Q9NWQ8 432 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 PSMA5P28066 241 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 METTL24Q5JXM2 366 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 PPP1R9BQ96SB3 815 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 TSPY26PQ9H489 355 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 SEC31BQ9NQW1 1179 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 USP25Q9UHP3 1055 aa11.24□□□□□ -0.61
CUX1-206ENST00000437600 NIP7Q9Y221 180 aaKnown RBP eCLIP11.24□□□□□ -0.612e-10■■■■■ 60.1
CUX1-206ENST00000437600 ZNF609O15014 1411 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 APOBRQ0VD83 1088 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 TXNRD1Q16881 649 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 WASHC4Q2M389 1173 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 USPL1Q5W0Q7 1092 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 HAUS7Q99871 368 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 FTOQ9C0B1 505 aaKnown RBP eCLIP11.23□□□□□ -0.61
CUX1-206ENST00000437600 HIP1O00291 1037 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 CTSWP56202 376 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 EN1Q05925 392 aaPredicted RBP11.23□□□□□ -0.61
CUX1-206ENST00000437600 TRIM28Q13263 835 aaKnown RBP11.23□□□□□ -0.61
CUX1-206ENST00000437600 DEFB132Q7Z7B7 95 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 TTC6Q86TZ1 520 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 CKAP2LQ8IYA6 745 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 TM6SF1Q9BZW5 370 aa11.23□□□□□ -0.61
CUX1-206ENST00000437600 CAMTA2O94983 1202 aa11.22□□□□□ -0.61
CUX1-206ENST00000437600 XAGE2Q96GT9 111 aa11.22□□□□□ -0.61
CUX1-206ENST00000437600 STK11IPQ8N1F8 1099 aa11.22□□□□□ -0.61
CUX1-206ENST00000437600 KBTBD3Q8NAB2 608 aa11.22□□□□□ -0.61
CUX1-206ENST00000437600 ARHGEF1Q92888 912 aaKnown RBP11.22□□□□□ -0.61
CUX1-206ENST00000437600 AK7Q96M32 723 aa11.22□□□□□ -0.61
CUX1-206ENST00000437600 DENND2AQ9ULE3 1009 aa11.22□□□□□ -0.61
CUX1-206ENST00000437600 LIG1P18858 919 aa11.22□□□□□ -0.61
CUX1-206ENST00000437600 MSNP26038 577 aaKnown RBP11.22□□□□□ -0.61
CUX1-206ENST00000437600 KCNB2Q92953 911 aa11.22□□□□□ -0.61
CUX1-206ENST00000437600 OSBP2Q969R2 916 aa11.22□□□□□ -0.61
CUX1-206ENST00000437600 ZSCAN31Q96LW9 406 aaPredicted RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms