RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 NUP98P52948 1817 aa12.69□□□□□ -0.38
CUX1-205ENST00000425244 HCLS1P14317 486 aaPredicted RBP12.68□□□□□ -0.38
CUX1-205ENST00000425244 UBE2HP62256 183 aa12.68□□□□□ -0.38
CUX1-205ENST00000425244 SUSD4Q5VX71 490 aa12.68□□□□□ -0.38
CUX1-205ENST00000425244 LARP1BQ659C4 914 aaKnown RBP12.68□□□□□ -0.38
CUX1-205ENST00000425244 CCDC129Q6ZRS4 1044 aa12.68□□□□□ -0.38
CUX1-205ENST00000425244 TMEM87AQ8NBN3 555 aa12.68□□□□□ -0.38
CUX1-205ENST00000425244 DBNDD2Q9BQY9 259 aa12.68□□□□□ -0.38
CUX1-205ENST00000425244 IRS4O14654 1257 aaPredicted RBP12.68□□□□□ -0.38
CUX1-205ENST00000425244 ZPR1O75312 459 aa12.68□□□□□ -0.38
CUX1-205ENST00000425244 DDX46Q7L014 1031 aaKnown RBP12.68□□□□□ -0.38
CUX1-205ENST00000425244 CCDC24Q8N4L8 307 aa12.68□□□□□ -0.38
CUX1-205ENST00000425244 MPNDQ8N594 471 aa12.68□□□□□ -0.38
CUX1-205ENST00000425244 RFX5P48382 616 aaPredicted RBP12.67□□□□□ -0.38
CUX1-205ENST00000425244 PCCAP05165 728 aaPredicted RBP12.67□□□□□ -0.38
CUX1-205ENST00000425244 MED23Q9ULK4 1368 aa12.67□□□□□ -0.38
CUX1-205ENST00000425244 COL5A3P25940 1745 aaPredicted RBP12.66□□□□□ -0.38
CUX1-205ENST00000425244 TAF5LO75529 589 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 ATP5JP18859 108 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 RPS6KB1P23443 525 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 RFC4P35249 363 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 TRIM28Q13263 835 aaKnown RBP12.66□□□□□ -0.38
CUX1-205ENST00000425244 CCDC57Q2TAC2 916 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 TAF7LQ5H9L4 462 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 FAM173BQ6P4H8 233 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 ZNF34Q8IZ26 560 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 ARHGEF1Q92888 912 aaKnown RBP12.66□□□□□ -0.38
CUX1-205ENST00000425244 NEUROD6Q96NK8 337 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 SEC62Q99442 399 aaKnown RBP12.66□□□□□ -0.38
CUX1-205ENST00000425244 NOL7Q9UMY1 257 aaKnown RBP12.66□□□□□ -0.38
CUX1-205ENST00000425244 ZNF652Q9Y2D9 606 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 CNTNAP4Q9C0A0 1308 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 NPHP1O15259 732 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 RPS6KA4O75676 772 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 GTF2E1P29083 439 aaPredicted RBP12.66□□□□□ -0.38
CUX1-205ENST00000425244 RABL6Q3YEC7 729 aaPredicted RBP12.66□□□□□ -0.38
CUX1-205ENST00000425244 HS1BP3Q53T59 392 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 CDC37L1Q7L3B6 337 aa12.66□□□□□ -0.38
CUX1-205ENST00000425244 TXNRD1Q16881 649 aa12.65□□□□□ -0.38
CUX1-205ENST00000425244 GIMAP6Q6P9H5 292 aa12.65□□□□□ -0.38
CUX1-205ENST00000425244 CCDC39Q9UFE4 941 aa12.65□□□□□ -0.38
CUX1-205ENST00000425244 ANKRD1Q15327 319 aa12.65□□□□□ -0.38
CUX1-205ENST00000425244 CSPP1Q1MSJ5 1256 aa12.65□□□□□ -0.38
CUX1-205ENST00000425244 TRAPPC3LQ5T215 181 aa12.65□□□□□ -0.38
CUX1-205ENST00000425244 TBC1D9BQ66K14 1250 aa12.65□□□□□ -0.38
CUX1-205ENST00000425244 UTP14AQ9BVJ6 771 aaKnown RBP12.65□□□□□ -0.38
CUX1-205ENST00000425244 UTRNP46939 3433 aa12.65□□□□□ -0.38
CUX1-205ENST00000425244 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.64□□□□□ -0.39
CUX1-205ENST00000425244 HSP90B1P14625 803 aaKnown RBP12.64□□□□□ -0.39
CUX1-205ENST00000425244 PLCB2Q00722 1185 aa12.64□□□□□ -0.39
CUX1-205ENST00000425244 LRRC24Q50LG9 513 aa12.64□□□□□ -0.39
CUX1-205ENST00000425244 PROM2Q8N271 834 aa12.64□□□□□ -0.39
CUX1-205ENST00000425244 PUS3Q9BZE2 481 aaKnown RBP12.64□□□□□ -0.39
CUX1-205ENST00000425244 GREM2Q9H772 168 aa12.64□□□□□ -0.39
CUX1-205ENST00000425244 SNRKQ9NRH2 765 aa12.64□□□□□ -0.39
CUX1-205ENST00000425244 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.64□□□□□ -0.39
CUX1-205ENST00000425244 USP25Q9UHP3 1055 aa12.64□□□□□ -0.39
CUX1-205ENST00000425244 TOB2Q14106 344 aaPredicted RBP12.64□□□□□ -0.39
CUX1-205ENST00000425244 HMG20BQ9P0W2 317 aa12.64□□□□□ -0.39
CUX1-205ENST00000425244 ZKSCAN5Q9Y2L8 839 aa12.64□□□□□ -0.39
CUX1-205ENST00000425244 IFIT5Q13325 482 aaKnown RBP12.64□□□□□ -0.39
CUX1-205ENST00000425244 SLFNL1Q499Z3 407 aa12.64□□□□□ -0.39
CUX1-205ENST00000425244 RC3H1Q5TC82 1133 aaKnown RBP12.64□□□□□ -0.39
CUX1-205ENST00000425244 LRRC2Q9BYS8 371 aa12.64□□□□□ -0.39
CUX1-205ENST00000425244 SH3TC1Q8TE82 1336 aa12.63□□□□□ -0.39
CUX1-205ENST00000425244 GOLIM4O00461 696 aa12.63□□□□□ -0.39
CUX1-205ENST00000425244 PDCP20941 246 aa12.63□□□□□ -0.39
CUX1-205ENST00000425244 ITGA6P23229 1130 aa12.63□□□□□ -0.39
CUX1-205ENST00000425244 CTSWP56202 376 aa12.63□□□□□ -0.39
CUX1-205ENST00000425244 TIMM10P62072 90 aa12.63□□□□□ -0.39
CUX1-205ENST00000425244 KRT85P78386 507 aa12.63□□□□□ -0.39
CUX1-205ENST00000425244 TTLL11Q8NHH1 800 aa12.63□□□□□ -0.39
CUX1-205ENST00000425244 SETDB2Q96T68 719 aa12.63□□□□□ -0.39
CUX1-205ENST00000425244 BCL2L12Q9HB09 334 aa12.63□□□□□ -0.39
CUX1-205ENST00000425244 NARFQ9UHQ1 456 aa12.63□□□□□ -0.39
CUX1-205ENST00000425244 OFD1O75665 1012 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 LETM1O95202 739 aaPredicted RBP12.62□□□□□ -0.39
CUX1-205ENST00000425244 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.62□□□□□ -0.39
CUX1-205ENST00000425244 FAM184AQ8NB25 1140 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 NEK1Q96PY6 1258 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 HAUS7Q99871 368 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 TFCP2L1Q9NZI6 479 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 ZNF609O15014 1411 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 ANKRD36CQ5JPF3 1778 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 LY75O60449 1722 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 JAK2O60674 1132 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 KRT32Q14532 448 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 MCMDC2Q4G0Z9 681 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 TFIP11Q9UBB9 837 aaKnown RBP12.62□□□□□ -0.39
CUX1-205ENST00000425244 TAF1LQ8IZX4 1826 aa12.62□□□□□ -0.39
CUX1-205ENST00000425244 C4BP0C0L5 1744 aa12.61□□□□□ -0.39
CUX1-205ENST00000425244 PDE8AO60658 829 aa12.61□□□□□ -0.39
CUX1-205ENST00000425244 ERFEQ4G0M1 354 aa12.61□□□□□ -0.39
CUX1-205ENST00000425244 PARP10Q53GL7 1025 aa12.61□□□□□ -0.39
CUX1-205ENST00000425244 Q6ZUG5 572 aa12.61□□□□□ -0.39
CUX1-205ENST00000425244 TTC6Q86TZ1 520 aa12.61□□□□□ -0.39
CUX1-205ENST00000425244 DDX11Q96FC9 970 aa12.61□□□□□ -0.39
CUX1-205ENST00000425244 R3HCC1Q9Y3T6 440 aaKnown RBP12.61□□□□□ -0.39
CUX1-205ENST00000425244 U3KPZ7 1027 aaPredicted RBP12.61□□□□□ -0.39
CUX1-205ENST00000425244 NTSR2O95665 410 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms