RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 CEP350Q5VT06 3117 aa18.6■□□□□ 0.57
LIMS4-201ENST00000413601 IPO8O15397 1037 aaKnown RBP18.6■□□□□ 0.57
LIMS4-201ENST00000413601 UBTFL1P0CB47 393 aaPredicted RBP18.6■□□□□ 0.57
LIMS4-201ENST00000413601 HIRAP54198 1017 aaPredicted RBP18.6■□□□□ 0.57
LIMS4-201ENST00000413601 SAMD7Q7Z3H4 446 aa18.6■□□□□ 0.57
LIMS4-201ENST00000413601 TRPM4Q8TD43 1214 aa18.6■□□□□ 0.57
LIMS4-201ENST00000413601 COA1Q9GZY4 146 aa18.6■□□□□ 0.57
LIMS4-201ENST00000413601 TNNQ9UQP3 1299 aa18.6■□□□□ 0.57
LIMS4-201ENST00000413601 USP17L3A6NCW0 530 aa18.59■□□□□ 0.57
LIMS4-201ENST00000413601 USP17L4A6NCW7 530 aa18.59■□□□□ 0.57
LIMS4-201ENST00000413601 TRIM27P14373 513 aa18.59■□□□□ 0.57
LIMS4-201ENST00000413601 INTS3Q68E01 1043 aaKnown RBP18.59■□□□□ 0.57
LIMS4-201ENST00000413601 RSBN1LQ6PCB5 846 aaPredicted RBP18.59■□□□□ 0.57
LIMS4-201ENST00000413601 ATF7IPQ6VMQ6 1270 aa18.59■□□□□ 0.57
LIMS4-201ENST00000413601 USP17L1Q7RTZ2 530 aa18.59■□□□□ 0.57
LIMS4-201ENST00000413601 IRS2Q9Y4H2 1338 aa18.58■□□□□ 0.57
LIMS4-201ENST00000413601 KLHDC4Q8TBB5 520 aa18.58■□□□□ 0.56
LIMS4-201ENST00000413601 FBXW7Q969H0 707 aa18.58■□□□□ 0.56
LIMS4-201ENST00000413601 MEIS3Q99687 375 aa18.58■□□□□ 0.56
LIMS4-201ENST00000413601 RIPOR2Q9Y4F9 1068 aa18.58■□□□□ 0.56
LIMS4-201ENST00000413601 EGFRP00533 1210 aa18.57■□□□□ 0.56
LIMS4-201ENST00000413601 TBC1D10BQ4KMP7 808 aaPredicted RBP18.57■□□□□ 0.56
LIMS4-201ENST00000413601 LRRC24Q50LG9 513 aa18.57■□□□□ 0.56
LIMS4-201ENST00000413601 RBM26Q5T8P6 1007 aaKnown RBP18.57■□□□□ 0.56
LIMS4-201ENST00000413601 AGBL3Q8NEM8 1001 aa18.57■□□□□ 0.56
LIMS4-201ENST00000413601 CLUAP1Q96AJ1 413 aa18.57■□□□□ 0.56
LIMS4-201ENST00000413601 ZNF609O15014 1411 aa18.57■□□□□ 0.56
LIMS4-201ENST00000413601 FMR1Q06787 632 aaKnown RBP eCLIP18.56■□□□□ 0.56
LIMS4-201ENST00000413601 C15orf52Q6ZUT6 534 aaKnown RBP18.56■□□□□ 0.56
LIMS4-201ENST00000413601 KLRG1Q96E93 195 aa18.56■□□□□ 0.56
LIMS4-201ENST00000413601 GMLQ99445 158 aa18.56■□□□□ 0.56
LIMS4-201ENST00000413601 MXD3Q9BW11 206 aa18.56■□□□□ 0.56
LIMS4-201ENST00000413601 CD209Q9NNX6 404 aa18.56■□□□□ 0.56
LIMS4-201ENST00000413601 CREBZFQ9NS37 354 aa18.56■□□□□ 0.56
LIMS4-201ENST00000413601 PGAP2Q9UHJ9 254 aa18.56■□□□□ 0.56
LIMS4-201ENST00000413601 LRRFIP2Q9Y608 721 aaKnown RBP18.56■□□□□ 0.56
LIMS4-201ENST00000413601 MROH5Q6ZUA9 1318 aa18.55■□□□□ 0.56
LIMS4-201ENST00000413601 TRAF5O00463 557 aa18.55■□□□□ 0.56
LIMS4-201ENST00000413601 RFX5P48382 616 aaPredicted RBP18.55■□□□□ 0.56
LIMS4-201ENST00000413601 DACT2Q5SW24 774 aa18.55■□□□□ 0.56
LIMS4-201ENST00000413601 ZKSCAN2Q63HK3 967 aa18.55■□□□□ 0.56
LIMS4-201ENST00000413601 TTLL5Q6EMB2 1281 aa18.55■□□□□ 0.56
LIMS4-201ENST00000413601 ZC3H15Q8WU90 426 aaKnown RBP18.55■□□□□ 0.56
LIMS4-201ENST00000413601 TMEM88BA6NKF7 163 aa18.54■□□□□ 0.56
LIMS4-201ENST00000413601 GTF2IP78347 998 aa18.54■□□□□ 0.56
LIMS4-201ENST00000413601 UBE4AQ14139 1066 aa18.54■□□□□ 0.56
LIMS4-201ENST00000413601 KIF4BQ2VIQ3 1234 aa18.54■□□□□ 0.56
LIMS4-201ENST00000413601 STRIP1Q5VSL9 837 aa18.54■□□□□ 0.56
LIMS4-201ENST00000413601 ZNF804AQ7Z570 1209 aa18.54■□□□□ 0.56
LIMS4-201ENST00000413601 HDAC5Q9UQL6 1122 aa18.54■□□□□ 0.56
LIMS4-201ENST00000413601 GNAI3P08754 354 aa18.53■□□□□ 0.56
LIMS4-201ENST00000413601 USP17L8P0C7I0 530 aa18.53■□□□□ 0.56
LIMS4-201ENST00000413601 ZNF280AP59817 542 aaPredicted RBP18.53■□□□□ 0.56
LIMS4-201ENST00000413601 METTL24Q5JXM2 366 aa18.53■□□□□ 0.56
LIMS4-201ENST00000413601 GLIS2Q9BZE0 524 aaPredicted RBP18.53■□□□□ 0.56
LIMS4-201ENST00000413601 MYH13Q9UKX3 1938 aa18.53■□□□□ 0.56
LIMS4-201ENST00000413601 PTPN12Q05209 780 aaKnown RBP18.52■□□□□ 0.56
LIMS4-201ENST00000413601 TMEM57Q8N5G2 664 aa18.52■□□□□ 0.56
LIMS4-201ENST00000413601 EYA2O00167 538 aa18.51■□□□□ 0.55
LIMS4-201ENST00000413601 IL1R1P14778 569 aa18.51■□□□□ 0.55
LIMS4-201ENST00000413601 GYG1P46976 350 aa18.51■□□□□ 0.55
LIMS4-201ENST00000413601 VGLL2Q8N8G2 317 aa18.51■□□□□ 0.55
LIMS4-201ENST00000413601 MYOZ2Q9NPC6 264 aa18.51■□□□□ 0.55
LIMS4-201ENST00000413601 MKRN1Q9UHC7 482 aaKnown RBP18.51■□□□□ 0.55
LIMS4-201ENST00000413601 ASTN2O75129 1339 aaPredicted RBP18.5■□□□□ 0.55
LIMS4-201ENST00000413601 MYO3BQ8WXR4 1341 aa18.5■□□□□ 0.55
LIMS4-201ENST00000413601 PDE8BO95263 885 aa18.5■□□□□ 0.55
LIMS4-201ENST00000413601 CDC37L1Q7L3B6 337 aa18.5■□□□□ 0.55
LIMS4-201ENST00000413601 USP48Q86UV5 1035 aa18.5■□□□□ 0.55
LIMS4-201ENST00000413601 FAM84BQ96KN1 310 aaPredicted RBP18.5■□□□□ 0.55
LIMS4-201ENST00000413601 SIL1Q9H173 461 aa18.5■□□□□ 0.55
LIMS4-201ENST00000413601 ARAP2Q8WZ64 1704 aa18.49■□□□□ 0.55
LIMS4-201ENST00000413601 ECM29Q5VYK3 1845 aa18.49■□□□□ 0.55
LIMS4-201ENST00000413601 HIBADHP31937 336 aaKnown RBP18.49■□□□□ 0.55
LIMS4-201ENST00000413601 SCARF1Q14162 830 aa18.49■□□□□ 0.55
LIMS4-201ENST00000413601 CST9Q5W186 159 aa18.49■□□□□ 0.55
LIMS4-201ENST00000413601 DLK2Q6UY11 383 aa18.49■□□□□ 0.55
LIMS4-201ENST00000413601 ATG9AQ7Z3C6 839 aa18.49■□□□□ 0.55
LIMS4-201ENST00000413601 KIAA0825Q8IV33 1275 aa18.49■□□□□ 0.55
LIMS4-201ENST00000413601 OGFOD1Q8N543 542 aa18.49■□□□□ 0.55
LIMS4-201ENST00000413601 DCPSQ96C86 337 aaKnown RBP18.49■□□□□ 0.55
LIMS4-201ENST00000413601 JAG2Q9Y219 1238 aa18.49■□□□□ 0.55
LIMS4-201ENST00000413601 KRT26Q7Z3Y9 468 aa18.48■□□□□ 0.55
LIMS4-201ENST00000413601 FTSJ3Q8IY81 847 aaKnown RBP18.48■□□□□ 0.55
LIMS4-201ENST00000413601 DZIP1LQ8IYY4 767 aaKnown RBP18.48■□□□□ 0.55
LIMS4-201ENST00000413601 CERS5Q8N5B7 392 aa18.48■□□□□ 0.55
LIMS4-201ENST00000413601 JMYQ8N9B5 988 aa18.48■□□□□ 0.55
LIMS4-201ENST00000413601 TDRD7Q8NHU6 1098 aaKnown RBP18.48■□□□□ 0.55
LIMS4-201ENST00000413601 GGA3Q9NZ52 723 aa18.48■□□□□ 0.55
LIMS4-201ENST00000413601 ABT1Q9ULW3 272 aaKnown RBP18.48■□□□□ 0.55
LIMS4-201ENST00000413601 PA2G4Q9UQ80 394 aaKnown RBP18.48■□□□□ 0.55
LIMS4-201ENST00000413601 CNTNAP1P78357 1384 aa18.47■□□□□ 0.55
LIMS4-201ENST00000413601 SASH1O94885 1247 aa18.47■□□□□ 0.55
LIMS4-201ENST00000413601 CELF2O95319 508 aaKnown RBP18.47■□□□□ 0.55
LIMS4-201ENST00000413601 RLBP1P12271 317 aa18.47■□□□□ 0.55
LIMS4-201ENST00000413601 ZNF408Q9H9D4 720 aa18.47■□□□□ 0.55
LIMS4-201ENST00000413601 ADM5C9JUS6 153 aa18.46■□□□□ 0.55
LIMS4-201ENST00000413601 SRGAP3O43295 1099 aa18.46■□□□□ 0.55
LIMS4-201ENST00000413601 CIAO1O76071 339 aa18.46■□□□□ 0.55
LIMS4-201ENST00000413601 GNAI2P04899 355 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms