RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PRDM5Q9NQX1 630 aaPredicted RBP8.46□□□□□ -1.06
SCN9A-202ENST00000409435 ZNF277Q9NRM2 450 aaPredicted RBP8.46□□□□□ -1.06
SCN9A-202ENST00000409435 MBIPQ9NS73 344 aa8.46□□□□□ -1.06
SCN9A-202ENST00000409435 MCM9Q9NXL9 1143 aa8.46□□□□□ -1.06
SCN9A-202ENST00000409435 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.46□□□□□ -1.061e-7■■■■□ 20.2
SCN9A-202ENST00000409435 IL6STP40189 918 aaPredicted RBP8.46□□□□□ -1.06
SCN9A-202ENST00000409435 C1orf115Q9H7X2 142 aa8.46□□□□□ -1.06
SCN9A-202ENST00000409435 USP40Q9NVE5 1235 aa8.46□□□□□ -1.06
SCN9A-202ENST00000409435 CNPY2Q9Y2B0 182 aa8.46□□□□□ -1.06
SCN9A-202ENST00000409435 PLEKHH1Q9ULM0 1364 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 SPATA24Q86W54 205 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 TICAM2Q86XR7 235 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 CCDC150Q8NCX0 1101 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 CENPHQ9H3R5 247 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 NR2E3Q9Y5X4 410 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 USP6P35125 1406 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 WASF1Q92558 559 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 CCP110O43303 1012 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 MAP4K4O95819 1239 aaPredicted RBP8.45□□□□□ -1.06
SCN9A-202ENST00000409435 GTF2A1P52655 376 aaPredicted RBP8.45□□□□□ -1.06
SCN9A-202ENST00000409435 KCTD2Q14681 263 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 MFSD14BQ5SR56 506 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 FAM107BQ9H098 131 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 POLKQ9UBT6 870 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 CAVIN1Q6NZI2 390 aaKnown RBP8.45□□□□□ -1.06
SCN9A-202ENST00000409435 FERMT2Q96AC1 680 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 CLRN2A0PK11 232 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 TFRCP02786 760 aaKnown RBP8.45□□□□□ -1.06
SCN9A-202ENST00000409435 TGFB2P61812 414 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 IL1RAPL2Q9NP60 686 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 SLC4A4Q9Y6R1 1079 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 XDHP47989 1333 aa8.45□□□□□ -1.06
SCN9A-202ENST00000409435 ARHGEF40Q8TER5 1519 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.44□□□□□ -1.06
SCN9A-202ENST00000409435 USP17L3A6NCW0 530 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 USP17L4A6NCW7 530 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 ZBBXA8MT70 800 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 NR1I2O75469 434 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 USP17L1Q7RTZ2 530 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 ERICH4A6NGS2 130 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 USP17L8P0C7I0 530 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 MFSD14CQ5VZR4 134 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 POTEAQ6S8J7 498 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 CCDC8Q9H0W5 538 aaPredicted RBP8.44□□□□□ -1.06
SCN9A-202ENST00000409435 FOXD4L1Q9NU39 408 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 SAP30BPQ9UHR5 308 aaKnown RBP8.44□□□□□ -1.06
SCN9A-202ENST00000409435 RNF17Q9BXT8 1623 aaKnown RBP8.44□□□□□ -1.06
SCN9A-202ENST00000409435 CCDC196A0A1B0GTZ2 297 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 F6X3S4 739 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 ZNF213O14771 459 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 CCDC117Q8IWD4 279 aaPredicted RBP8.44□□□□□ -1.06
SCN9A-202ENST00000409435 BOLA2Q9H3K6 86 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 PTCH1Q13635 1447 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 ALDH1L1O75891 902 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 BCAMP50895 628 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 MYO3BQ8WXR4 1341 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 BLMP54132 1417 aaPredicted RBP8.44□□□□□ -1.06
SCN9A-202ENST00000409435 NBPF15Q8N660 670 aa8.44□□□□□ -1.06
SCN9A-202ENST00000409435 CGNQ9P2M7 1197 aaKnown RBP8.44□□□□□ -1.06
SCN9A-202ENST00000409435 TCOF1Q13428 1488 aaKnown RBP8.43□□□□□ -1.06
SCN9A-202ENST00000409435 GRM8O00222 908 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 FTOQ9C0B1 505 aaKnown RBP eCLIP8.43□□□□□ -1.06
SCN9A-202ENST00000409435 U3KPZ7 1027 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-202ENST00000409435 PTPRCP08575 1304 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 PTPDC1A2A3K4 754 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 DPEP1P16444 411 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 SCNN1DP51172 638 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 DDX21Q9NR30 783 aaKnown RBP eCLIP8.43□□□□□ -1.06
SCN9A-202ENST00000409435 LRFN2Q9ULH4 789 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 IARSP41252 1262 aaKnown RBP8.43□□□□□ -1.06
SCN9A-202ENST00000409435 CIZ1Q9ULV3 898 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-202ENST00000409435 GOLIM4O00461 696 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 BACH1O14867 736 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 ERLIN1O75477 346 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 NASPP49321 788 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-202ENST00000409435 TAF1CQ15572 869 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-202ENST00000409435 MFSD6Q6ZSS7 791 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 UPF1Q92900 1129 aaKnown RBP eCLIP8.43□□□□□ -1.06
SCN9A-202ENST00000409435 PPP2R3CQ969Q6 453 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 RAB34Q9BZG1 259 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 MADDQ8WXG6 1647 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 ZFYVE9O95405 1425 aa8.43□□□□□ -1.06
SCN9A-202ENST00000409435 CHRNA5P30532 468 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 USP14P54578 494 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 PUM3Q15397 648 aaKnown RBP8.42□□□□□ -1.06
SCN9A-202ENST00000409435 LNPKQ9C0E8 428 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 CD2APQ9Y5K6 639 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 A0A1W2PP64 1363 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 KIF4AO95239 1232 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 TMEM266Q2M3C6 531 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 CEP170BQ9Y4F5 1589 aaPredicted RBP8.42□□□□□ -1.06
SCN9A-202ENST00000409435 C1orf167Q5SNV9 1468 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 UQCRHLA0A096LP55 91 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 OFD1O75665 1012 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 UQCRHP07919 91 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 NLRP5P59047 1200 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 HACE1Q8IYU2 909 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 ARHGEF1Q92888 912 aaKnown RBP8.42□□□□□ -1.06
SCN9A-202ENST00000409435 RBM28Q9NW13 759 aaKnown RBP8.42□□□□□ -1.06
SCN9A-202ENST00000409435 LEMD3Q9Y2U8 911 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms