RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 AGBL3Q8NEM8 1001 aa13.21□□□□□ -0.29
NEDD8-202ENST00000396828 CDCA5Q96FF9 252 aa13.21□□□□□ -0.29
NEDD8-202ENST00000396828 STK31Q9BXU1 1019 aa13.21□□□□□ -0.29
NEDD8-202ENST00000396828 MYOZ2Q9NPC6 264 aa13.21□□□□□ -0.29
NEDD8-202ENST00000396828 BSDC1Q9NW68 430 aaPredicted RBP13.21□□□□□ -0.29
NEDD8-202ENST00000396828 ZNF609O15014 1411 aa13.21□□□□□ -0.3
NEDD8-202ENST00000396828 FANCIQ9NVI1 1328 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 USP17L3A6NCW0 530 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 USP17L4A6NCW7 530 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 USP17L8P0C7I0 530 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 CCT4P50991 539 aaKnown RBP13.2□□□□□ -0.3
NEDD8-202ENST00000396828 KIF23Q02241 960 aaPredicted RBP13.2□□□□□ -0.3
NEDD8-202ENST00000396828 GCKRQ14397 625 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 NBPF9Q3BBW0 867 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 DACT2Q5SW24 774 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 PRAMEF18Q5VWM3 479 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 MOB2Q70IA6 237 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 USP17L1Q7RTZ2 530 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 PODNQ7Z5L7 613 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 SULF1Q8IWU6 871 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 C2orf69Q8N8R5 385 aa13.2□□□□□ -0.3
NEDD8-202ENST00000396828 CDC5LQ99459 802 aaKnown RBP13.2□□□□□ -0.3
NEDD8-202ENST00000396828 SPINK5Q9NQ38 1064 aaPredicted RBP13.2□□□□□ -0.3
NEDD8-202ENST00000396828 CCDC85CA6NKD9 419 aa13.19□□□□□ -0.3
NEDD8-202ENST00000396828 SNAP23O00161 211 aa13.19□□□□□ -0.3
NEDD8-202ENST00000396828 ZNF157P51786 506 aaPredicted RBP13.19□□□□□ -0.3
NEDD8-202ENST00000396828 NEXNQ0ZGT2 675 aa13.19□□□□□ -0.3
NEDD8-202ENST00000396828 FLIIQ13045 1269 aa13.19□□□□□ -0.3
NEDD8-202ENST00000396828 MAPK8IP2Q13387 824 aaPredicted RBP13.19□□□□□ -0.3
NEDD8-202ENST00000396828 FAM161AQ3B820 660 aa13.19□□□□□ -0.3
NEDD8-202ENST00000396828 CNKSR2Q8WXI2 1034 aa13.19□□□□□ -0.3
NEDD8-202ENST00000396828 MCOLN1Q9GZU1 580 aa13.19□□□□□ -0.3
NEDD8-202ENST00000396828 MED23Q9ULK4 1368 aa13.19□□□□□ -0.3
NEDD8-202ENST00000396828 CA12O43570 354 aa13.18□□□□□ -0.3
NEDD8-202ENST00000396828 VAMP4O75379 141 aa13.18□□□□□ -0.3
NEDD8-202ENST00000396828 ITGA6P23229 1130 aa13.18□□□□□ -0.3
NEDD8-202ENST00000396828 IL16Q14005 1332 aa13.17□□□□□ -0.3
NEDD8-202ENST00000396828 F6X3S4 739 aa13.17□□□□□ -0.3
NEDD8-202ENST00000396828 NPM3O75607 178 aaKnown RBP13.17□□□□□ -0.3
NEDD8-202ENST00000396828 CSF1RP07333 972 aa13.17□□□□□ -0.3
NEDD8-202ENST00000396828 SLC10A3P09131 477 aa13.17□□□□□ -0.3
NEDD8-202ENST00000396828 EXOSC9Q06265 439 aaKnown RBP13.17□□□□□ -0.3
NEDD8-202ENST00000396828 DNAAF4Q8WXU2 420 aa13.17□□□□□ -0.3
NEDD8-202ENST00000396828 CSRNP1Q96S65 589 aa13.17□□□□□ -0.3
NEDD8-202ENST00000396828 PLA2G12BQ9BX93 195 aa13.17□□□□□ -0.3
NEDD8-202ENST00000396828 CHMP4AQ9BY43 222 aa13.17□□□□□ -0.3
NEDD8-202ENST00000396828 RNF186Q9NXI6 227 aa13.17□□□□□ -0.3
NEDD8-202ENST00000396828 TRPA1O75762 1119 aa13.16□□□□□ -0.3
NEDD8-202ENST00000396828 FKBP5Q13451 457 aaPredicted RBP13.16□□□□□ -0.3
NEDD8-202ENST00000396828 DGKZQ13574 1117 aa13.16□□□□□ -0.3
NEDD8-202ENST00000396828 RASAL3Q86YV0 1011 aa13.16□□□□□ -0.3
NEDD8-202ENST00000396828 FBXW7Q969H0 707 aa13.16□□□□□ -0.3
NEDD8-202ENST00000396828 CCDC102AQ96A19 550 aa13.16□□□□□ -0.3
NEDD8-202ENST00000396828 ZNF804BA4D1E1 1349 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 IRS2Q9Y4H2 1338 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 UBE2Q2LH0YL09 131 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 WNT10BO00744 389 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 TAF5LO75529 589 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 SASH1O94885 1247 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 IGHMBP2P38935 993 aaKnown RBP13.15□□□□□ -0.3
NEDD8-202ENST00000396828 FOXO4P98177 505 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 CHRNDQ07001 517 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 EPHA10Q5JZY3 1008 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 HELBQ8NG08 1087 aaPredicted RBP13.15□□□□□ -0.3
NEDD8-202ENST00000396828 LINS1Q8NG48 757 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 COA1Q9GZY4 146 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 LEMD3Q9Y2U8 911 aa13.15□□□□□ -0.3
NEDD8-202ENST00000396828 A0A1B0GUL6 1792 aa13.15□□□□□ -0.31
NEDD8-202ENST00000396828 PITPNM2Q9BZ72 1349 aa13.14□□□□□ -0.31
NEDD8-202ENST00000396828 AKAP11Q9UKA4 1901 aa13.14□□□□□ -0.31
NEDD8-202ENST00000396828 STRIP1Q5VSL9 837 aa13.14□□□□□ -0.31
NEDD8-202ENST00000396828 FZD1Q9UP38 647 aa13.14□□□□□ -0.31
NEDD8-202ENST00000396828 PCDHAC2Q9Y5I4 1007 aa13.14□□□□□ -0.31
NEDD8-202ENST00000396828 PAPPA2Q9BXP8 1791 aa13.14□□□□□ -0.31
NEDD8-202ENST00000396828 CACNA1FO60840 1977 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 RGS19P49795 217 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 GTF2IP78347 998 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 BEND3Q5T5X7 828 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 TTLL5Q6EMB2 1281 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 KIAA0825Q8IV33 1275 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 WDR63Q8IWG1 891 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 CERS5Q8N5B7 392 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 ZBED3Q96IU2 234 aaPredicted RBP13.13□□□□□ -0.31
NEDD8-202ENST00000396828 ZNF594Q96JF6 807 aaPredicted RBP13.13□□□□□ -0.31
NEDD8-202ENST00000396828 MPHOSPH8Q99549 860 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 MYH16Q9H6N6 1097 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 SAGE1Q9NXZ1 904 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 CENPFP49454 3210 aa13.13□□□□□ -0.31
NEDD8-202ENST00000396828 HTTP42858 3142 aa13.12□□□□□ -0.31
NEDD8-202ENST00000396828 ANKRD2Q9GZV1 360 aa13.12□□□□□ -0.31
NEDD8-202ENST00000396828 CD209Q9NNX6 404 aa13.12□□□□□ -0.31
NEDD8-202ENST00000396828 AOX1Q06278 1338 aa13.12□□□□□ -0.31
NEDD8-202ENST00000396828 ANKRD18BA2A2Z9 1011 aa13.11□□□□□ -0.31
NEDD8-202ENST00000396828 MKRN3Q13064 507 aaKnown RBP13.11□□□□□ -0.31
NEDD8-202ENST00000396828 PRKG1Q13976 671 aa13.11□□□□□ -0.31
NEDD8-202ENST00000396828 OGFOD1Q8N543 542 aa13.11□□□□□ -0.31
NEDD8-202ENST00000396828 JAG2Q9Y219 1238 aa13.11□□□□□ -0.31
NEDD8-202ENST00000396828 MYO3BQ8WXR4 1341 aa13.11□□□□□ -0.31
NEDD8-202ENST00000396828 ZNF521Q96K83 1311 aa13.11□□□□□ -0.31
NEDD8-202ENST00000396828 KCNJ4P48050 445 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms