RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 RRAGBQ5VZM2 374 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 IQCEQ6IPM2 695 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 CCDC102BQ68D86 513 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 ZNF397Q8NF99 534 aaPredicted RBP7.53□□□□□ -1.2
SMC1A-202ENST00000375340 CAPZA3Q96KX2 299 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 PUF60Q9UHX1 559 aaKnown RBP7.53□□□□□ -1.2
SMC1A-202ENST00000375340 TNNI3KQ59H18 835 aa7.52□□□□□ -1.2
SMC1A-202ENST00000375340 TPCN1Q9ULQ1 816 aa7.52□□□□□ -1.2
SMC1A-202ENST00000375340 PYCARDQ9ULZ3 195 aa7.52□□□□□ -1.2
SMC1A-202ENST00000375340 FPGT-TNNI3KV9GXZ4 949 aa7.52□□□□□ -1.2
SMC1A-202ENST00000375340 A0A0D9SFI3 127 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 DHX58Q96C10 678 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 LZTFL1Q9NQ48 299 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 IQSEC2Q5JU85 1478 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 PTCH1Q13635 1447 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 NR1I2O75469 434 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 RDXP35241 583 aaKnown RBP7.52□□□□□ -1.21
SMC1A-202ENST00000375340 STX17P56962 302 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.52□□□□□ -1.21
SMC1A-202ENST00000375340 SRRTQ9BXP5 876 aaKnown RBP7.52□□□□□ -1.21
SMC1A-202ENST00000375340 CTNND2Q9UQB3 1225 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 TULP4Q9NRJ4 1543 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 SPA17Q15506 151 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 CATIPQ7Z7H3 387 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 SLC4A4Q9Y6R1 1079 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 SLU7O95391 586 aaKnown RBP7.52□□□□□ -1.21
SMC1A-202ENST00000375340 KAT6BQ8WYB5 2073 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 BMS1Q14692 1282 aaKnown RBP7.52□□□□□ -1.21
SMC1A-202ENST00000375340 ZFYVE27Q5T4F4 411 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 VIRMAQ69YN4 1812 aaKnown RBP7.52□□□□□ -1.21
SMC1A-202ENST00000375340 ZBTB43O43298 467 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 SMAP1Q8IYB5 467 aaPredicted RBP7.52□□□□□ -1.21
SMC1A-202ENST00000375340 MAGEB6Q8N7X4 407 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 DRC1Q96MC2 740 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 ATP7BP35670 1465 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 KIAA0232Q92628 1395 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 A0A087WWV3 80 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 YEATS4O95619 227 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 CCDC178Q5BJE1 867 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 BCL2L12Q9HB09 334 aa7.52□□□□□ -1.21
SMC1A-202ENST00000375340 LRMPQ12912 555 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 TTF1Q15361 905 aaPredicted RBP7.51□□□□□ -1.21
SMC1A-202ENST00000375340 LONRF3Q496Y0 759 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 CTR9Q6PD62 1173 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 MIGA1Q8NAN2 632 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 UTP14AQ9BVJ6 771 aaKnown RBP7.51□□□□□ -1.21
SMC1A-202ENST00000375340 OGFRQ9NZT2 677 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 LDHAL6AQ6ZMR3 332 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 LSG1Q9H089 658 aaKnown RBP7.51□□□□□ -1.21
SMC1A-202ENST00000375340 ADCK5Q3MIX3 580 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 TLR7Q9NYK1 1049 aaKnown RBP7.51□□□□□ -1.21
SMC1A-202ENST00000375340 RHOXF2BP0C7M4 288 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 WTAPQ15007 396 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 RHOXF2Q9BQY4 288 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 CALCOCO1Q9P1Z2 691 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 SEC63Q9UGP8 760 aaKnown RBP7.51□□□□□ -1.21
SMC1A-202ENST00000375340 METP08581 1390 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 ADGRB3O60242 1522 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 RTN1Q16799 776 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 SLC9C2Q5TAH2 1124 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 DHX32Q7L7V1 743 aaKnown RBP7.51□□□□□ -1.21
SMC1A-202ENST00000375340 PLIN2Q99541 437 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 MYL10Q9BUA6 226 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 GTPBP4Q9BZE4 634 aaKnown RBP7.51□□□□□ -1.21
SMC1A-202ENST00000375340 RBM5P52756 815 aaKnown RBP eCLIP7.51□□□□□ -1.21
SMC1A-202ENST00000375340 FAM160A1Q05DH4 1040 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 HELBQ8NG08 1087 aaPredicted RBP7.51□□□□□ -1.21
SMC1A-202ENST00000375340 DBNDD2Q9BQY9 259 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 CRACR2AQ9BSW2 395 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 NRBP1Q9UHY1 535 aa7.51□□□□□ -1.21
SMC1A-202ENST00000375340 ZNF500O60304 480 aaPredicted RBP7.5□□□□□ -1.21
SMC1A-202ENST00000375340 ANKIB1Q9P2G1 1089 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 PTPN21Q16825 1174 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 SEC62Q99442 399 aaKnown RBP7.5□□□□□ -1.21
SMC1A-202ENST00000375340 BCCIPQ9P287 314 aaKnown RBP eCLIP7.5□□□□□ -1.21
SMC1A-202ENST00000375340 MYO3AQ8NEV4 1616 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 MYOM1P52179 1685 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 CDR1P51861 262 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 JADE2Q9NQC1 790 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 CDK12Q9NYV4 1490 aaPredicted RBP7.5□□□□□ -1.21
SMC1A-202ENST00000375340 MLH3Q9UHC1 1453 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 MCM6Q14566 821 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 SSH2Q76I76 1423 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 KDRP35968 1356 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 LARGE1O95461 756 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 PNOCQ13519 176 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 CAVIN4Q5BKX8 364 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 DDX17Q92841 729 aaKnown RBP7.5□□□□□ -1.21
SMC1A-202ENST00000375340 UBA5Q9GZZ9 404 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 VAT1LQ9HCJ6 419 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 FKBP15Q5T1M5 1219 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 DZIP1Q86YF9 867 aaKnown RBP7.5□□□□□ -1.21
SMC1A-202ENST00000375340 VPS18Q9P253 973 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 CTDSPL2Q05D32 466 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 RASEFQ8IZ41 740 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 CTCFLQ8NI51 663 aaPredicted RBP7.5□□□□□ -1.21
SMC1A-202ENST00000375340 GOPCQ9HD26 462 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 SETBP1Q9Y6X0 1596 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 CCT6AP40227 531 aaKnown RBP7.5□□□□□ -1.21
SMC1A-202ENST00000375340 MTIF2P46199 727 aaKnown RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms