RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 ARID5BQ14865 1188 aa13.03□□□□□ -0.32
CCDC40-203ENST00000374877 FAM98CQ17RN3 349 aaKnown RBP13.03□□□□□ -0.32
CCDC40-203ENST00000374877 BRF1Q92994 677 aa13.03□□□□□ -0.32
CCDC40-203ENST00000374877 CGNQ9P2M7 1197 aaKnown RBP13.03□□□□□ -0.32
CCDC40-203ENST00000374877 RBM43Q6ZSC3 357 aaKnown RBP13.03□□□□□ -0.32
CCDC40-203ENST00000374877 ZNF589Q86UQ0 364 aaPredicted RBP13.03□□□□□ -0.32
CCDC40-203ENST00000374877 GJD4Q96KN9 370 aaPredicted RBP13.03□□□□□ -0.32
CCDC40-203ENST00000374877 SASH1O94885 1247 aa13.02□□□□□ -0.32
CCDC40-203ENST00000374877 FILIP1Q7Z7B0 1213 aa13.02□□□□□ -0.32
CCDC40-203ENST00000374877 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.02□□□□□ -0.32
CCDC40-203ENST00000374877 V9GYY5 206 aaPredicted RBP13.02□□□□□ -0.32
CCDC40-203ENST00000374877 ITGB4P16144 1822 aa13.02□□□□□ -0.32
CCDC40-203ENST00000374877 DOT1LQ8TEK3 1739 aa13.02□□□□□ -0.32
CCDC40-203ENST00000374877 PRAMEF22A3QJZ6 481 aa13.02□□□□□ -0.32
CCDC40-203ENST00000374877 ONECUT3O60422 494 aaPredicted RBP13.02□□□□□ -0.32
CCDC40-203ENST00000374877 PDIA6Q15084 440 aa13.02□□□□□ -0.32
CCDC40-203ENST00000374877 TEX13AQ9BXU3 409 aaPredicted RBP13.02□□□□□ -0.32
CCDC40-203ENST00000374877 BECN2A8MW95 431 aa13.02□□□□□ -0.33
CCDC40-203ENST00000374877 SYCP1Q15431 976 aa13.02□□□□□ -0.33
CCDC40-203ENST00000374877 PROSER3Q2NL68 480 aa13.02□□□□□ -0.33
CCDC40-203ENST00000374877 EDC3Q96F86 508 aaKnown RBP13.02□□□□□ -0.33
CCDC40-203ENST00000374877 ATG3Q9NT62 314 aa13.02□□□□□ -0.33
CCDC40-203ENST00000374877 A0A0U1RQG5 324 aaPredicted RBP13.01□□□□□ -0.33
CCDC40-203ENST00000374877 USP27XA6NNY8 438 aa13.01□□□□□ -0.33
CCDC40-203ENST00000374877 FGD1P98174 961 aa13.01□□□□□ -0.33
CCDC40-203ENST00000374877 C11orf57Q6ZUT1 292 aaPredicted RBP13.01□□□□□ -0.33
CCDC40-203ENST00000374877 TRMT1Q9NXH9 659 aaKnown RBP13.01□□□□□ -0.33
CCDC40-203ENST00000374877 LRRC8AQ8IWT6 810 aa13.01□□□□□ -0.33
CCDC40-203ENST00000374877 FBXW7Q969H0 707 aa13.01□□□□□ -0.33
CCDC40-203ENST00000374877 SUCLG2Q96I99 432 aa13.01□□□□□ -0.33
CCDC40-203ENST00000374877 PODXL2Q9NZ53 605 aa13.01□□□□□ -0.33
CCDC40-203ENST00000374877 A0A087WWV3 80 aa13.01□□□□□ -0.33
CCDC40-203ENST00000374877 ALDH1L1O75891 902 aa13.01□□□□□ -0.33
CCDC40-203ENST00000374877 AIMP1Q12904 312 aaKnown RBP13.01□□□□□ -0.33
CCDC40-203ENST00000374877 KLHDC4Q8TBB5 520 aa13.01□□□□□ -0.33
CCDC40-203ENST00000374877 BICC1Q9H694 974 aaKnown RBP13.01□□□□□ -0.33
CCDC40-203ENST00000374877 HDAC5Q9UQL6 1122 aa13.01□□□□□ -0.33
CCDC40-203ENST00000374877 USP16Q9Y5T5 823 aa13.01□□□□□ -0.33
CCDC40-203ENST00000374877 SKILP12757 684 aa13□□□□□ -0.33
CCDC40-203ENST00000374877 RESTQ13127 1097 aa13□□□□□ -0.33
CCDC40-203ENST00000374877 PTPN14Q15678 1187 aa13□□□□□ -0.33
CCDC40-203ENST00000374877 DDX58O95786 925 aaKnown RBP13□□□□□ -0.33
CCDC40-203ENST00000374877 KSR2Q6VAB6 950 aa13□□□□□ -0.33
CCDC40-203ENST00000374877 GTF3C6Q969F1 213 aa13□□□□□ -0.33
CCDC40-203ENST00000374877 LRRC2Q9BYS8 371 aa13□□□□□ -0.33
CCDC40-203ENST00000374877 HMG20BQ9P0W2 317 aa13□□□□□ -0.33
CCDC40-203ENST00000374877 CFAP45Q9UL16 551 aa13□□□□□ -0.33
CCDC40-203ENST00000374877 DDX41Q9UJV9 622 aaKnown RBP13□□□□□ -0.33
CCDC40-203ENST00000374877 ZNF215Q9UL58 517 aaPredicted RBP13□□□□□ -0.33
CCDC40-203ENST00000374877 GRM8O00222 908 aa12.99□□□□□ -0.33
CCDC40-203ENST00000374877 CAVIN2O95810 425 aa12.99□□□□□ -0.33
CCDC40-203ENST00000374877 Q6ZUG5 572 aa12.99□□□□□ -0.33
CCDC40-203ENST00000374877 LRP10Q7Z4F1 713 aa12.99□□□□□ -0.33
CCDC40-203ENST00000374877 NEK1Q96PY6 1258 aa12.99□□□□□ -0.33
CCDC40-203ENST00000374877 FTOQ9C0B1 505 aaKnown RBP eCLIP12.99□□□□□ -0.33
CCDC40-203ENST00000374877 IQCB1Q15051 598 aa12.99□□□□□ -0.33
CCDC40-203ENST00000374877 STX1AQ16623 288 aa12.99□□□□□ -0.33
CCDC40-203ENST00000374877 CCAR1Q8IX12 1150 aaKnown RBP12.99□□□□□ -0.33
CCDC40-203ENST00000374877 ASAP1Q9ULH1 1129 aa12.99□□□□□ -0.33
CCDC40-203ENST00000374877 CCDC69A6NI79 296 aa12.99□□□□□ -0.33
CCDC40-203ENST00000374877 CDC25BP30305 580 aa12.99□□□□□ -0.33
CCDC40-203ENST00000374877 CICQ96RK0 1608 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-203ENST00000374877 MED23Q9ULK4 1368 aa12.98□□□□□ -0.33
CCDC40-203ENST00000374877 PPFIA3O75145 1194 aa12.98□□□□□ -0.33
CCDC40-203ENST00000374877 TAF5LO75529 589 aa12.98□□□□□ -0.33
CCDC40-203ENST00000374877 CCDC73Q6ZRK6 1079 aa12.98□□□□□ -0.33
CCDC40-203ENST00000374877 KIF18AQ8NI77 898 aa12.98□□□□□ -0.33
CCDC40-203ENST00000374877 NDUFB9Q9Y6M9 179 aa12.98□□□□□ -0.33
CCDC40-203ENST00000374877 NPHP1O15259 732 aa12.98□□□□□ -0.33
CCDC40-203ENST00000374877 KRT32Q14532 448 aa12.98□□□□□ -0.33
CCDC40-203ENST00000374877 ERCC4Q92889 916 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-203ENST00000374877 NAP1L2Q9ULW6 460 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-203ENST00000374877 CCDC129Q6ZRS4 1044 aa12.97□□□□□ -0.33
CCDC40-203ENST00000374877 MRFAP1L1Q96HT8 127 aa12.97□□□□□ -0.33
CCDC40-203ENST00000374877 KAZALD1Q96I82 304 aa12.97□□□□□ -0.33
CCDC40-203ENST00000374877 ALDH8A1Q9H2A2 487 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-203ENST00000374877 ZSCAN16Q9H4T2 348 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-203ENST00000374877 NEMFO60524 1076 aa12.97□□□□□ -0.33
CCDC40-203ENST00000374877 KINO60870 393 aaKnown RBP12.97□□□□□ -0.33
CCDC40-203ENST00000374877 PTCD1O75127 700 aaKnown RBP12.97□□□□□ -0.33
CCDC40-203ENST00000374877 SARM1Q6SZW1 724 aa12.97□□□□□ -0.33
CCDC40-203ENST00000374877 SMARCC1Q92922 1105 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-203ENST00000374877 SNRKQ9NRH2 765 aa12.97□□□□□ -0.33
CCDC40-203ENST00000374877 GABPB1Q06547 395 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-203ENST00000374877 ZNF397Q8NF99 534 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-203ENST00000374877 LINS1Q8NG48 757 aa12.97□□□□□ -0.33
CCDC40-203ENST00000374877 CHGBP05060 677 aa12.96□□□□□ -0.33
CCDC40-203ENST00000374877 ELF2Q15723 593 aa12.96□□□□□ -0.33
CCDC40-203ENST00000374877 KMT5BQ4FZB7 885 aa12.96□□□□□ -0.33
CCDC40-203ENST00000374877 CTAGE5O15320 804 aa12.96□□□□□ -0.33
CCDC40-203ENST00000374877 DNAJC2Q99543 621 aaKnown RBP12.96□□□□□ -0.33
CCDC40-203ENST00000374877 GOLPH3LQ9H4A5 285 aa12.96□□□□□ -0.33
CCDC40-203ENST00000374877 QTRT2Q9H974 415 aaKnown RBP12.96□□□□□ -0.33
CCDC40-203ENST00000374877 STARD3NLO95772 234 aa12.96□□□□□ -0.34
CCDC40-203ENST00000374877 RBM6P78332 1123 aaKnown RBP12.96□□□□□ -0.34
CCDC40-203ENST00000374877 SCRN1Q12765 414 aa12.96□□□□□ -0.34
CCDC40-203ENST00000374877 KRT222Q8N1A0 295 aa12.96□□□□□ -0.34
CCDC40-203ENST00000374877 AOPEPQ8N6M6 819 aa12.96□□□□□ -0.34
CCDC40-203ENST00000374877 SYTL4Q96C24 671 aaPredicted RBP12.96□□□□□ -0.34
CCDC40-203ENST00000374877 SEC62Q99442 399 aaKnown RBP12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms