RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 PLEKHG1Q9ULL1 1385 aa15.97■□□□□ 0.15
USP49-201ENST00000373006 PFKFB2O60825 505 aa15.97■□□□□ 0.15
USP49-201ENST00000373006 DBNDD2Q9BQY9 259 aa15.97■□□□□ 0.15
USP49-201ENST00000373006 TAOK2Q9UL54 1235 aa15.97■□□□□ 0.15
USP49-201ENST00000373006 DDX58O95786 925 aaKnown RBP15.97■□□□□ 0.15
USP49-201ENST00000373006 MCMDC2Q4G0Z9 681 aa15.97■□□□□ 0.15
USP49-201ENST00000373006 PLEKHO1Q53GL0 409 aaPredicted RBP15.97■□□□□ 0.15
USP49-201ENST00000373006 ILDR1Q86SU0 546 aaPredicted RBP15.97■□□□□ 0.15
USP49-201ENST00000373006 ZNF609O15014 1411 aa15.96■□□□□ 0.15
USP49-201ENST00000373006 NDUFA8P51970 172 aa15.96■□□□□ 0.15
USP49-201ENST00000373006 ZRSR1Q15695 479 aaKnown RBP15.96■□□□□ 0.15
USP49-201ENST00000373006 ARMCX5Q6P1M9 558 aa15.96■□□□□ 0.15
USP49-201ENST00000373006 PPP1R13BQ96KQ4 1090 aa15.96■□□□□ 0.15
USP49-201ENST00000373006 NAT10Q9H0A0 1025 aaKnown RBP15.96■□□□□ 0.15
USP49-201ENST00000373006 TBX22Q9Y458 520 aa15.96■□□□□ 0.15
USP49-201ENST00000373006 POLR3DP05423 398 aaPredicted RBP15.96■□□□□ 0.15
USP49-201ENST00000373006 ATP5JP18859 108 aa15.96■□□□□ 0.15
USP49-201ENST00000373006 SLC39A6Q13433 755 aa15.96■□□□□ 0.15
USP49-201ENST00000373006 TNNI3KQ59H18 835 aa15.96■□□□□ 0.15
USP49-201ENST00000373006 NAA16Q6N069 864 aaPredicted RBP15.96■□□□□ 0.15
USP49-201ENST00000373006 ZNF396Q96N95 335 aaPredicted RBP15.96■□□□□ 0.15
USP49-201ENST00000373006 MYD88Q99836 296 aa15.96■□□□□ 0.15
USP49-201ENST00000373006 FPGT-TNNI3KV9GXZ4 949 aa15.96■□□□□ 0.15
USP49-201ENST00000373006 CHD2O14647 1828 aaKnown RBP15.96■□□□□ 0.14
USP49-201ENST00000373006 TAF3Q5VWG9 929 aa15.95■□□□□ 0.14
USP49-201ENST00000373006 DHX32Q7L7V1 743 aaKnown RBP15.95■□□□□ 0.14
USP49-201ENST00000373006 JCADQ9P266 1359 aa15.95■□□□□ 0.14
USP49-201ENST00000373006 GSDMDP57764 484 aa15.95■□□□□ 0.14
USP49-201ENST00000373006 HOMER1Q86YM7 354 aa15.95■□□□□ 0.14
USP49-201ENST00000373006 TIGD1Q96MW7 591 aa15.95■□□□□ 0.14
USP49-201ENST00000373006 PHF8Q9UPP1 1060 aa15.95■□□□□ 0.14
USP49-201ENST00000373006 SF3A1Q15459 793 aaKnown RBP15.95■□□□□ 0.14
USP49-201ENST00000373006 FMR1NBQ8N0W7 255 aaPredicted RBP15.95■□□□□ 0.14
USP49-201ENST00000373006 MRPS27Q92552 414 aaKnown RBP15.95■□□□□ 0.14
USP49-201ENST00000373006 PTPN21Q16825 1174 aa15.94■□□□□ 0.14
USP49-201ENST00000373006 LLPHQ9BRT6 129 aaKnown RBP15.94■□□□□ 0.14
USP49-201ENST00000373006 FAM53CQ9NYF3 392 aa15.94■□□□□ 0.14
USP49-201ENST00000373006 UTYO14607 1347 aa15.94■□□□□ 0.14
USP49-201ENST00000373006 NEURL1BA8MQ27 555 aa15.94■□□□□ 0.14
USP49-201ENST00000373006 SFPQP23246 707 aaKnown RBP eCLIP15.94■□□□□ 0.14
USP49-201ENST00000373006 NEXNQ0ZGT2 675 aa15.94■□□□□ 0.14
USP49-201ENST00000373006 GCKRQ14397 625 aa15.94■□□□□ 0.14
USP49-201ENST00000373006 PDIA6Q15084 440 aa15.94■□□□□ 0.14
USP49-201ENST00000373006 DDX21Q9NR30 783 aaKnown RBP eCLIP15.94■□□□□ 0.14
USP49-201ENST00000373006 CCDC66A2RUB6 948 aa15.93■□□□□ 0.14
USP49-201ENST00000373006 ARHGAP29Q52LW3 1261 aa15.93■□□□□ 0.14
USP49-201ENST00000373006 OSBPL5Q9H0X9 879 aaPredicted RBP15.93■□□□□ 0.14
USP49-201ENST00000373006 GPHNQ9NQX3 736 aaPredicted RBP15.93■□□□□ 0.14
USP49-201ENST00000373006 GJB4Q9NTQ9 266 aa15.93■□□□□ 0.14
USP49-201ENST00000373006 CLIC4Q9Y696 253 aa15.93■□□□□ 0.14
USP49-201ENST00000373006 LMOD1P29536 600 aaPredicted RBP15.93■□□□□ 0.14
USP49-201ENST00000373006 COPS6Q7L5N1 327 aa15.93■□□□□ 0.14
USP49-201ENST00000373006 XAGE3Q8WTP9 111 aa15.93■□□□□ 0.14
USP49-201ENST00000373006 KIAA1468Q9P260 1216 aa15.93■□□□□ 0.14
USP49-201ENST00000373006 CLCN6P51797 869 aa15.93■□□□□ 0.14
USP49-201ENST00000373006 PTPN12Q05209 780 aaKnown RBP15.93■□□□□ 0.14
USP49-201ENST00000373006 RAB11FIP4Q86YS3 637 aa15.93■□□□□ 0.14
USP49-201ENST00000373006 GOLIM4O00461 696 aa15.92■□□□□ 0.14
USP49-201ENST00000373006 THEMISQ8N1K5 641 aaPredicted RBP15.92■□□□□ 0.14
USP49-201ENST00000373006 NEUROD6Q96NK8 337 aa15.92■□□□□ 0.14
USP49-201ENST00000373006 NOL10Q9BSC4 688 aaKnown RBP15.92■□□□□ 0.14
USP49-201ENST00000373006 DNAI1Q9UI46 699 aa15.92■□□□□ 0.14
USP49-201ENST00000373006 DIP2AQ14689 1571 aa15.92■□□□□ 0.14
USP49-201ENST00000373006 POLR3GO15318 223 aaPredicted RBP15.92■□□□□ 0.14
USP49-201ENST00000373006 PDIA3P30101 505 aaKnown RBP15.92■□□□□ 0.14
USP49-201ENST00000373006 BMS1Q14692 1282 aaKnown RBP15.92■□□□□ 0.14
USP49-201ENST00000373006 STK38Q15208 465 aa15.92■□□□□ 0.14
USP49-201ENST00000373006 UBE3BQ7Z3V4 1068 aa15.92■□□□□ 0.14
USP49-201ENST00000373006 L2HGDHQ9H9P8 463 aa15.92■□□□□ 0.14
USP49-201ENST00000373006 KIF2AO00139 706 aaPredicted RBP15.91■□□□□ 0.14
USP49-201ENST00000373006 FHOD1Q9Y613 1164 aa15.91■□□□□ 0.14
USP49-201ENST00000373006 ATP5J2-PTCD1G3V325 749 aa15.91■□□□□ 0.14
USP49-201ENST00000373006 PTCD1O75127 700 aaKnown RBP15.91■□□□□ 0.14
USP49-201ENST00000373006 ATP1A3P13637 1013 aa15.91■□□□□ 0.14
USP49-201ENST00000373006 FDPSP14324 419 aaKnown RBP15.91■□□□□ 0.14
USP49-201ENST00000373006 H2AFXP16104 143 aaPredicted RBP15.91■□□□□ 0.14
USP49-201ENST00000373006 ADALQ6DHV7 355 aa15.91■□□□□ 0.14
USP49-201ENST00000373006 IMPACTQ9P2X3 320 aa15.91■□□□□ 0.14
USP49-201ENST00000373006 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.91■□□□□ 0.14
USP49-201ENST00000373006 E7EWF7 191 aa15.91■□□□□ 0.14
USP49-201ENST00000373006 GOLGA8FQ08AF8 430 aa15.91■□□□□ 0.14
USP49-201ENST00000373006 GOLGA8DPQ0D2H9 430 aa15.91■□□□□ 0.14
USP49-201ENST00000373006 TTLL5Q6EMB2 1281 aa15.91■□□□□ 0.14
USP49-201ENST00000373006 FAM177A1Q8N128 213 aaPredicted RBP15.91■□□□□ 0.14
USP49-201ENST00000373006 EXOSC10Q01780 885 aaKnown RBP15.9■□□□□ 0.14
USP49-201ENST00000373006 HMGB1P09429 215 aaKnown RBP15.9■□□□□ 0.14
USP49-201ENST00000373006 CCDC93Q567U6 631 aa15.9■□□□□ 0.14
USP49-201ENST00000373006 HAUS7Q99871 368 aa15.9■□□□□ 0.14
USP49-201ENST00000373006 EPC1Q9H2F5 836 aa15.9■□□□□ 0.14
USP49-201ENST00000373006 COPRSQ9NQ92 184 aa15.9■□□□□ 0.14
USP49-201ENST00000373006 PXDNQ92626 1479 aa15.9■□□□□ 0.14
USP49-201ENST00000373006 UBR1Q8IWV7 1749 aa15.9■□□□□ 0.14
USP49-201ENST00000373006 SLC3A2P08195 630 aaKnown RBP15.89■□□□□ 0.13
USP49-201ENST00000373006 LINC00301Q8NCQ3 95 aa15.89■□□□□ 0.13
USP49-201ENST00000373006 KCND1Q9NSA2 647 aa15.89■□□□□ 0.13
USP49-201ENST00000373006 CARMIL3Q8ND23 1372 aa15.89■□□□□ 0.13
USP49-201ENST00000373006 RFX5P48382 616 aaPredicted RBP15.89■□□□□ 0.13
USP49-201ENST00000373006 TIMM10P62072 90 aa15.89■□□□□ 0.13
USP49-201ENST00000373006 AMOTQ4VCS5 1084 aa15.89■□□□□ 0.13
USP49-201ENST00000373006 KBTBD3Q8NAB2 608 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms