RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 HDAC9Q9UKV0 1011 aa25.19■■□□□ 1.62
TM9SF3-201ENST00000371142 SYT1P21579 422 aa25.18■■□□□ 1.62
TM9SF3-201ENST00000371142 CUL7Q14999 1698 aa25.18■■□□□ 1.62
TM9SF3-201ENST00000371142 APOBRQ0VD83 1088 aa25.18■■□□□ 1.62
TM9SF3-201ENST00000371142 ZNF804AQ7Z570 1209 aa25.18■■□□□ 1.62
TM9SF3-201ENST00000371142 PLVAPQ9BX97 442 aa25.18■■□□□ 1.62
TM9SF3-201ENST00000371142 SELENOOQ9BVL4 669 aa25.18■■□□□ 1.62
TM9SF3-201ENST00000371142 USP37Q86T82 979 aa25.18■■□□□ 1.62
TM9SF3-201ENST00000371142 LRRC59Q96AG4 307 aaKnown RBP25.17■■□□□ 1.62
TM9SF3-201ENST00000371142 PRIMPOLQ96LW4 560 aa25.17■■□□□ 1.62
TM9SF3-201ENST00000371142 MAGEB6Q8N7X4 407 aa25.17■■□□□ 1.62
TM9SF3-201ENST00000371142 SPTLC2O15270 562 aa25.17■■□□□ 1.62
TM9SF3-201ENST00000371142 NOLC1Q14978 699 aaKnown RBP eCLIP25.17■■□□□ 1.62
TM9SF3-201ENST00000371142 HELBQ8NG08 1087 aaPredicted RBP25.17■■□□□ 1.62
TM9SF3-201ENST00000371142 PPM1EQ8WY54 764 aa25.17■■□□□ 1.62
TM9SF3-201ENST00000371142 SPAG1Q07617 926 aa25.16■■□□□ 1.62
TM9SF3-201ENST00000371142 ZRANB1Q9UGI0 708 aa25.16■■□□□ 1.62
TM9SF3-201ENST00000371142 EIF4A2Q14240 407 aaKnown RBP25.16■■□□□ 1.62
TM9SF3-201ENST00000371142 C6orf50Q9HD87 102 aa25.16■■□□□ 1.62
TM9SF3-201ENST00000371142 LMOD1P29536 600 aaPredicted RBP25.16■■□□□ 1.62
TM9SF3-201ENST00000371142 DPH6Q7L8W6 267 aa25.16■■□□□ 1.62
TM9SF3-201ENST00000371142 TRIM75PA6NK02 468 aa25.16■■□□□ 1.62
TM9SF3-201ENST00000371142 KRT2P35908 639 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 PLS1Q14651 629 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 DYNC1I1O14576 645 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 TNNQ9UQP3 1299 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 STX17P56962 302 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 MTHFSDQ2M296 383 aaKnown RBP25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 CWF19L2Q2TBE0 894 aaKnown RBP25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 RXRAP19793 462 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 MCM7P33993 719 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 DZIP3Q86Y13 1208 aaKnown RBP25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 VEZTQ9HBM0 779 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 ASXL1Q8IXJ9 1541 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 RNF113AO15541 343 aaKnown RBP25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 OGFOD1Q8N543 542 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 SIRT1Q96EB6 747 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 RRP36Q96EU6 259 aaKnown RBP25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 MAP3K1Q13233 1512 aa25.15■■□□□ 1.62
TM9SF3-201ENST00000371142 TNNI2P48788 182 aa25.14■■□□□ 1.62
TM9SF3-201ENST00000371142 FAM212AQ96EL1 285 aa25.14■■□□□ 1.62
TM9SF3-201ENST00000371142 RASAL2Q9UJF2 1139 aa25.14■■□□□ 1.62
TM9SF3-201ENST00000371142 WWC3Q9ULE0 1092 aa25.14■■□□□ 1.62
TM9SF3-201ENST00000371142 ZBTB9Q96C00 473 aa25.14■■□□□ 1.62
TM9SF3-201ENST00000371142 TACC1O75410 805 aa25.14■■□□□ 1.62
TM9SF3-201ENST00000371142 AK2P54819 239 aa25.14■■□□□ 1.62
TM9SF3-201ENST00000371142 MCM6Q14566 821 aa25.14■■□□□ 1.62
TM9SF3-201ENST00000371142 C6orf163Q5TEZ5 329 aa25.14■■□□□ 1.62
TM9SF3-201ENST00000371142 MCM9Q9NXL9 1143 aa25.14■■□□□ 1.62
TM9SF3-201ENST00000371142 GRIPAP1Q4V328 841 aa25.14■■□□□ 1.61
TM9SF3-201ENST00000371142 TNRQ92752 1358 aa25.14■■□□□ 1.61
TM9SF3-201ENST00000371142 EEF2P13639 858 aaKnown RBP25.14■■□□□ 1.61
TM9SF3-201ENST00000371142 TFCP2Q12800 502 aa25.14■■□□□ 1.61
TM9SF3-201ENST00000371142 TCHPQ9BT92 498 aa25.14■■□□□ 1.61
TM9SF3-201ENST00000371142 MSH6P52701 1360 aa25.14■■□□□ 1.61
TM9SF3-201ENST00000371142 RTL9Q8NET4 1388 aa25.14■■□□□ 1.61
TM9SF3-201ENST00000371142 VTI1AQ96AJ9 217 aa25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 AKNAD1Q5T1N1 836 aa25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 GSTA5Q7RTV2 222 aa25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 PLIN2Q99541 437 aa25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 IQCGQ9H095 443 aaKnown RBP25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 JAG2Q9Y219 1238 aa25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 CAPZA3Q96KX2 299 aa25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 NFATC2IPQ8NCF5 419 aa25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 GRIN2AQ12879 1464 aa25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 SPDYE3A6NKU9 549 aa25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 TRAF1Q13077 416 aa25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 ZHX1Q9UKY1 873 aaPredicted RBP25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 SSX2IPQ9Y2D8 614 aa25.13■■□□□ 1.61
TM9SF3-201ENST00000371142 GRM1Q13255 1194 aa25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 CREB3L3Q68CJ9 461 aa25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 ZBTB21Q9ULJ3 1066 aa25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 ARL1P40616 181 aaPredicted RBP25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 PUS7Q96PZ0 661 aaKnown RBP25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 FAM13AO94988 1023 aa25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 UBXN1Q04323 297 aa25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 CABLES1Q8TDN4 633 aa25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 TTC12Q9H892 705 aaPredicted RBP25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 ARFGAP3Q9NP61 516 aa25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 NOL12Q9UGY1 213 aaKnown RBP eCLIP25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 V9GYY5 206 aaPredicted RBP25.12■■□□□ 1.61
TM9SF3-201ENST00000371142 CTAGE9A4FU28 777 aa25.11■■□□□ 1.61
TM9SF3-201ENST00000371142 KRT79Q5XKE5 535 aa25.11■■□□□ 1.61
TM9SF3-201ENST00000371142 ECM2O94769 699 aaPredicted RBP25.11■■□□□ 1.61
TM9SF3-201ENST00000371142 TYRO3Q06418 890 aa25.11■■□□□ 1.61
TM9SF3-201ENST00000371142 IPO4Q8TEX9 1081 aaKnown RBP25.11■■□□□ 1.61
TM9SF3-201ENST00000371142 FBF1Q8TES7 1133 aa25.11■■□□□ 1.61
TM9SF3-201ENST00000371142 DDX12PQ92771 950 aa25.11■■□□□ 1.61
TM9SF3-201ENST00000371142 CCDC50Q8IVM0 306 aa25.1■■□□□ 1.61
TM9SF3-201ENST00000371142 IMPG2Q9BZV3 1241 aa25.1■■□□□ 1.61
TM9SF3-201ENST00000371142 KARSQ15046 597 aaKnown RBP25.1■■□□□ 1.61
TM9SF3-201ENST00000371142 OTUD6BQ8N6M0 293 aa25.1■■□□□ 1.61
TM9SF3-201ENST00000371142 RIMBP2O15034 1052 aa25.1■■□□□ 1.61
TM9SF3-201ENST00000371142 MXRA7P84157 204 aa25.1■■□□□ 1.61
TM9SF3-201ENST00000371142 IRS4O14654 1257 aaPredicted RBP25.1■■□□□ 1.61
TM9SF3-201ENST00000371142 KRT24Q2M2I5 525 aa25.1■■□□□ 1.61
TM9SF3-201ENST00000371142 RBM26Q5T8P6 1007 aaKnown RBP25.1■■□□□ 1.61
TM9SF3-201ENST00000371142 KDM5BQ9UGL1 1544 aa25.1■■□□□ 1.61
TM9SF3-201ENST00000371142 GNAT2P19087 354 aa25.1■■□□□ 1.61
TM9SF3-201ENST00000371142 CEP85Q6P2H3 762 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms