RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 BRF1Q92994 677 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 ODF2LQ9ULJ1 636 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 NUCB1Q02818 461 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 NEK11Q8NG66 645 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 ZCRB1Q8TBF4 217 aaKnown RBP7.32□□□□□ -1.24
UPF2-201ENST00000356352 CCDC110Q8TBZ0 833 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 VTI1AQ96AJ9 217 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 SNRKQ9NRH2 765 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 SOS1Q07889 1333 aaPredicted RBP7.32□□□□□ -1.24
UPF2-201ENST00000356352 RTL1A6NKG5 1358 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 ATP5J2-PTCD1G3V325 749 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 EEF2P13639 858 aaKnown RBP7.32□□□□□ -1.24
UPF2-201ENST00000356352 RPL13P26373 211 aaKnown RBP7.32□□□□□ -1.24
UPF2-201ENST00000356352 ATP5DP30049 168 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 TNNI2P48788 182 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 ZSCAN23Q3MJ62 389 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 CFAP58Q5T655 872 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 KRT222Q8N1A0 295 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 CCDC63Q8NA47 563 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 GOLGA1Q92805 767 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 PANK2Q9BZ23 570 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 NOS1P29475 1434 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 RAD50Q92878 1312 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 AFMP43652 599 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 AKAP4Q5JQC9 854 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 ATL3Q6DD88 541 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 BRAPQ7Z569 592 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 ARFGAP2Q8N6H7 521 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 GABPB2Q8TAK5 448 aaPredicted RBP7.31□□□□□ -1.24
UPF2-201ENST00000356352 CSRNP2Q9H175 543 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 MTUS1Q9ULD2 1270 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 MAP3K1Q13233 1512 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 CCDC50Q8IVM0 306 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.31□□□□□ -1.24
UPF2-201ENST00000356352 C14orf93Q9H972 538 aaKnown RBP7.31□□□□□ -1.24
UPF2-201ENST00000356352 MKRN1Q9UHC7 482 aaKnown RBP7.31□□□□□ -1.24
UPF2-201ENST00000356352 ATP6V1AP38606 617 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 TNNC1P63316 161 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 TMX3Q96JJ7 454 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 TIGD1Q96MW7 591 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 TCHPQ9BT92 498 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 FAM169AQ9Y6X4 670 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 PCF11O94913 1555 aaKnown RBP7.31□□□□□ -1.24
UPF2-201ENST00000356352 GMNNO75496 209 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 POLD1P28340 1107 aa7.31□□□□□ -1.24
UPF2-201ENST00000356352 PAIP2Q9BPZ3 127 aaKnown RBP7.31□□□□□ -1.24
UPF2-201ENST00000356352 TAF12Q16514 161 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 ANO6Q4KMQ2 910 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 VWA3BQ502W6 1294 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 KSR2Q6VAB6 950 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 KIFAP3Q92845 792 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 TBC1D32Q96NH3 1257 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 NAP1L3Q99457 506 aaPredicted RBP7.3□□□□□ -1.24
UPF2-201ENST00000356352 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.3□□□□□ -1.24
UPF2-201ENST00000356352 NPHP3Q7Z494 1330 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 GRM8O00222 908 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 SEL1L2Q5TEA6 688 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 CERS3Q8IU89 383 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 CCDC42Q96M95 316 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 RBM8AQ9Y5S9 174 aaKnown RBP7.3□□□□□ -1.24
UPF2-201ENST00000356352 TNRQ92752 1358 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 RNF113AO15541 343 aaKnown RBP7.3□□□□□ -1.24
UPF2-201ENST00000356352 SKILP12757 684 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 ARID4AP29374 1257 aaPredicted RBP7.3□□□□□ -1.24
UPF2-201ENST00000356352 SLC8A3P57103 927 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 ZBTB16Q05516 673 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 Q6ZUG5 572 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 ESYT1Q9BSJ8 1104 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 MAK16Q9BXY0 300 aaKnown RBP7.3□□□□□ -1.24
UPF2-201ENST00000356352 GLT8D2Q9H1C3 349 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 PAG1Q9NWQ8 432 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 ATP6V0A2Q9Y487 856 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 ACEP12821 1306 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 DKC1O60832 514 aaKnown RBP eCLIP7.3□□□□□ -1.24
UPF2-201ENST00000356352 ATP8B2P98198 1209 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 CCDC121Q6ZUS5 278 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 HAUS2Q9NVX0 235 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 PARP3Q9Y6F1 533 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 ABCA10Q8WWZ4 1543 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 SPTLC2O15270 562 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 F13A1P00488 732 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 SETDB1Q15047 1291 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 ERCC6LQ2NKX8 1250 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 CFAP157Q5JU67 520 aa7.3□□□□□ -1.24
UPF2-201ENST00000356352 TRMT1LQ7Z2T5 733 aaKnown RBP7.3□□□□□ -1.24
UPF2-201ENST00000356352 C16orf71Q8IYS4 520 aaPredicted RBP7.3□□□□□ -1.24
UPF2-201ENST00000356352 PUS7Q96PZ0 661 aaKnown RBP7.3□□□□□ -1.24
UPF2-201ENST00000356352 CC2D2AQ9P2K1 1620 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 SYT1P21579 422 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 PSMC4P43686 418 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 TPD52P55327 224 aaPredicted RBP7.29□□□□□ -1.24
UPF2-201ENST00000356352 PICALMQ13492 652 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 TRIM14Q14142 442 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 TPTE2Q6XPS3 522 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 CCDC65Q8IXS2 484 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 GPR161Q8N6U8 529 aaKnown RBP7.29□□□□□ -1.24
UPF2-201ENST00000356352 CALCOCO2Q13137 446 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 CLUL1Q15846 466 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 SLC9C2Q5TAH2 1124 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 JDP2Q8WYK2 163 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms