RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 JRKLQ9Y4A0 524 aa13.71□□□□□ -0.21
COL12A1-202ENST00000345356 TNNC1P63316 161 aa13.71□□□□□ -0.22
COL12A1-202ENST00000345356 TMEM266Q2M3C6 531 aa13.71□□□□□ -0.22
COL12A1-202ENST00000345356 C8orf58Q8NAV2 365 aa13.71□□□□□ -0.22
COL12A1-202ENST00000345356 LEO1Q8WVC0 666 aaPredicted RBP13.71□□□□□ -0.22
COL12A1-202ENST00000345356 DDX46Q7L014 1031 aaKnown RBP13.7□□□□□ -0.22
COL12A1-202ENST00000345356 MMRN2Q9H8L6 949 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 PSMA7O14818 248 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 RANBP6O60518 1105 aaKnown RBP13.7□□□□□ -0.22
COL12A1-202ENST00000345356 SEPT6Q14141 434 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 CALML4Q96GE6 196 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 CDK13Q14004 1512 aaKnown RBP13.7□□□□□ -0.22
COL12A1-202ENST00000345356 CABP4P57796 275 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 HOMER2Q9NSB8 354 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 KRT13P13646 458 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 ATL3Q6DD88 541 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 C8orf74Q6P047 294 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 GDAP1L1Q96MZ0 367 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 SPAG5Q96R06 1193 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 ZBTB7BO15156 539 aaPredicted RBP13.7□□□□□ -0.22
COL12A1-202ENST00000345356 PEX19P40855 299 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 HNRNPH2P55795 449 aaKnown RBP13.7□□□□□ -0.22
COL12A1-202ENST00000345356 LRRC8AQ8IWT6 810 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 CCDC77Q9BR77 488 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 TRIM7Q9C029 511 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 ABCF2Q9UG63 623 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 ZMYM4Q5VZL5 1548 aa13.7□□□□□ -0.22
COL12A1-202ENST00000345356 GNGT1P63211 74 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 PPARDQ03181 441 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 IQCA1Q86XH1 822 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 KCNK9Q9NPC2 374 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 SWAP70Q9UH65 585 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 TATP17735 454 aaPredicted RBP13.69□□□□□ -0.22
COL12A1-202ENST00000345356 STAT6P42226 847 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 APOBRQ0VD83 1088 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 CATIPQ7Z7H3 387 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 NME9Q86XW9 330 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 SEC63Q9UGP8 760 aaKnown RBP13.69□□□□□ -0.22
COL12A1-202ENST00000345356 ZFYP08048 801 aaPredicted RBP13.69□□□□□ -0.22
COL12A1-202ENST00000345356 INTS8Q75QN2 995 aaKnown RBP13.69□□□□□ -0.22
COL12A1-202ENST00000345356 SND1Q7KZF4 910 aaKnown RBP eCLIP13.69□□□□□ -0.22
COL12A1-202ENST00000345356 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.69□□□□□ -0.22
COL12A1-202ENST00000345356 A0A087WZG4 1122 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 TERF2Q15554 542 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 CHAMP1Q96JM3 812 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 SMC6Q96SB8 1091 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 E7EVH7 732 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 CCT6AP40227 531 aaKnown RBP13.69□□□□□ -0.22
COL12A1-202ENST00000345356 E2F4Q16254 413 aa13.69□□□□□ -0.22
COL12A1-202ENST00000345356 RNF41Q9H4P4 317 aaPredicted RBP13.69□□□□□ -0.22
COL12A1-202ENST00000345356 BRAPQ7Z569 592 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 TSGA10Q9BZW7 698 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 XPO4Q9C0E2 1151 aaKnown RBP13.68□□□□□ -0.22
COL12A1-202ENST00000345356 PDE11AQ9HCR9 933 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 ZBTB43O43298 467 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 MIPOL1Q8TD10 442 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 EPRSP07814 1512 aaKnown RBP13.68□□□□□ -0.22
COL12A1-202ENST00000345356 PIK3R4Q99570 1358 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 PI4KAP2A4QPH2 592 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 SEC31AO94979 1220 aaKnown RBP13.68□□□□□ -0.22
COL12A1-202ENST00000345356 BMP15O95972 392 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 GBP1P32455 592 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 ZNF76P36508 570 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 ETF1P62495 437 aaKnown RBP13.68□□□□□ -0.22
COL12A1-202ENST00000345356 ATP2B3Q16720 1220 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 PI4KAP1Q8N8J0 262 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 BCAS4Q8TDM0 211 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 SNRKQ9NRH2 765 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 POLR3AO14802 1390 aaPredicted RBP13.68□□□□□ -0.22
COL12A1-202ENST00000345356 DTNBO60941 627 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 CTNNA2P26232 953 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 ACTN2P35609 894 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 STMN2Q93045 179 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 MAP3K2Q9Y2U5 619 aa13.68□□□□□ -0.22
COL12A1-202ENST00000345356 VAMP4O75379 141 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 ARID5AQ03989 594 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 TSNAXIP1Q2TAA8 658 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 MCMDC2Q4G0Z9 681 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 PPP1R14CQ8TAE6 165 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 SEC62Q99442 399 aaKnown RBP13.67□□□□□ -0.22
COL12A1-202ENST00000345356 FRMD3A2A2Y4 597 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 MTX1Q13505 466 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 CYP26C1Q6V0L0 522 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 KIAA1524Q8TCG1 905 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 DBF4Q9UBU7 674 aaPredicted RBP13.67□□□□□ -0.22
COL12A1-202ENST00000345356 IKBKGQ9Y6K9 419 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 CACNA2D3Q8IZS8 1091 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 TSPYL6Q8N831 410 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 VEZTQ9HBM0 779 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 SNX14Q9Y5W7 946 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 IBTKQ9P2D0 1353 aaPredicted RBP13.67□□□□□ -0.22
COL12A1-202ENST00000345356 AQRO60306 1485 aaKnown RBP eCLIP13.67□□□□□ -0.22
COL12A1-202ENST00000345356 EFCAB13Q8IY85 973 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 DDX12PQ92771 950 aa13.67□□□□□ -0.22
COL12A1-202ENST00000345356 MAP3K12Q12852 859 aa13.66□□□□□ -0.22
COL12A1-202ENST00000345356 GRIPAP1Q4V328 841 aa13.66□□□□□ -0.22
COL12A1-202ENST00000345356 FAM71BQ8TC56 605 aa13.66□□□□□ -0.22
COL12A1-202ENST00000345356 SETSIPP0DME0 302 aa13.66□□□□□ -0.22
COL12A1-202ENST00000345356 LONRF3Q496Y0 759 aa13.66□□□□□ -0.22
COL12A1-202ENST00000345356 IFT20Q8IY31 132 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms