RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 PUS3Q9BZE2 481 aaKnown RBP17.92■□□□□ 0.46
TPM3-208ENST00000341485 RFC4P35249 363 aa17.91■□□□□ 0.46
TPM3-208ENST00000341485 CLCN1P35523 988 aa17.91■□□□□ 0.46
TPM3-208ENST00000341485 ME3Q16798 604 aa17.91■□□□□ 0.46
TPM3-208ENST00000341485 TMEM87AQ8NBN3 555 aa17.91■□□□□ 0.46
TPM3-208ENST00000341485 ESPNB1AK53 854 aa17.91■□□□□ 0.46
TPM3-208ENST00000341485 GJB2P29033 226 aa17.91■□□□□ 0.46
TPM3-208ENST00000341485 TBC1D9BQ66K14 1250 aa17.91■□□□□ 0.46
TPM3-208ENST00000341485 BCL2L12Q9HB09 334 aa17.91■□□□□ 0.46
TPM3-208ENST00000341485 CEP126Q9P2H0 1117 aa17.91■□□□□ 0.46
TPM3-208ENST00000341485 TAF6LQ9Y6J9 622 aa17.91■□□□□ 0.46
TPM3-208ENST00000341485 NDUFB9Q9Y6M9 179 aa17.91■□□□□ 0.46
TPM3-208ENST00000341485 TAF5LO75529 589 aa17.9■□□□□ 0.46
TPM3-208ENST00000341485 PSMA5P28066 241 aa17.9■□□□□ 0.46
TPM3-208ENST00000341485 NEUROD6Q96NK8 337 aa17.9■□□□□ 0.46
TPM3-208ENST00000341485 GPR108Q9NPR9 543 aa17.9■□□□□ 0.46
TPM3-208ENST00000341485 DTNBO60941 627 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 F13A1P00488 732 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 GTF2E1P29083 439 aaPredicted RBP17.89■□□□□ 0.45
TPM3-208ENST00000341485 ANP32BQ92688 251 aaKnown RBP17.89■□□□□ 0.45
TPM3-208ENST00000341485 SETDB2Q96T68 719 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 TPCN1Q9ULQ1 816 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 CNPY2Q9Y2B0 182 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 RFX7Q2KHR2 1363 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 DDX60Q8IY21 1712 aaKnown RBP17.89■□□□□ 0.45
TPM3-208ENST00000341485 LAMB2P55268 1798 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 HMGB2P26583 209 aaKnown RBP17.89■□□□□ 0.45
TPM3-208ENST00000341485 RNF20Q5VTR2 975 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 LDHAL6AQ6ZMR3 332 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 AMIGO3Q86WK7 504 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 HAUS7Q99871 368 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 CNNM1Q9NRU3 951 aa17.89■□□□□ 0.45
TPM3-208ENST00000341485 ZNF609O15014 1411 aa17.88■□□□□ 0.45
TPM3-208ENST00000341485 ADRA2BP18089 450 aa17.88■□□□□ 0.45
TPM3-208ENST00000341485 CCDC152Q4G0S7 254 aa17.88■□□□□ 0.45
TPM3-208ENST00000341485 NECAB1Q8N987 351 aa17.88■□□□□ 0.45
TPM3-208ENST00000341485 DNAJC2Q99543 621 aaKnown RBP17.88■□□□□ 0.45
TPM3-208ENST00000341485 C4AP0C0L4 1744 aa17.88■□□□□ 0.45
TPM3-208ENST00000341485 RPS6KB1P23443 525 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 TXNRD1Q16881 649 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 BLOC1S2Q6QNY1 142 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 NYXQ9GZU5 481 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 MTMR6Q9Y217 621 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 AKAP2Q9Y2D5 859 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 APBA3O96018 575 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 CHGBP05060 677 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 TSGA10IPQ3SY00 556 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 ERFEQ4G0M1 354 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 METTL24Q5JXM2 366 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 HMG20BQ9P0W2 317 aa17.87■□□□□ 0.45
TPM3-208ENST00000341485 SYAP1Q96A49 352 aaPredicted RBP17.86■□□□□ 0.45
TPM3-208ENST00000341485 TCEANC2Q96MN5 208 aa17.86■□□□□ 0.45
TPM3-208ENST00000341485 ALDH8A1Q9H2A2 487 aaPredicted RBP17.86■□□□□ 0.45
TPM3-208ENST00000341485 RGS17Q9UGC6 210 aaPredicted RBP17.86■□□□□ 0.45
TPM3-208ENST00000341485 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.86■□□□□ 0.45
TPM3-208ENST00000341485 A0A1B0GUL7 405 aa17.86■□□□□ 0.45
TPM3-208ENST00000341485 TIMM10P62072 90 aa17.86■□□□□ 0.45
TPM3-208ENST00000341485 POTEAQ6S8J7 498 aa17.86■□□□□ 0.45
TPM3-208ENST00000341485 NBPF5PQ86XG9 351 aaPredicted RBP17.86■□□□□ 0.45
TPM3-208ENST00000341485 TOB2Q14106 344 aaPredicted RBP17.85■□□□□ 0.45
TPM3-208ENST00000341485 CCDC129Q6ZRS4 1044 aa17.85■□□□□ 0.45
TPM3-208ENST00000341485 DDX46Q7L014 1031 aaKnown RBP17.85■□□□□ 0.45
TPM3-208ENST00000341485 RIPOR2Q9Y4F9 1068 aa17.85■□□□□ 0.45
TPM3-208ENST00000341485 UBR3Q6ZT12 1888 aa17.85■□□□□ 0.45
TPM3-208ENST00000341485 NPHP1O15259 732 aa17.84■□□□□ 0.45
TPM3-208ENST00000341485 SEC62Q99442 399 aaKnown RBP17.84■□□□□ 0.45
TPM3-208ENST00000341485 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.84■□□□□ 0.45
TPM3-208ENST00000341485 ATP6V1DQ9Y5K8 247 aa17.84■□□□□ 0.45
TPM3-208ENST00000341485 COL24A1Q17RW2 1714 aa17.84■□□□□ 0.45
TPM3-208ENST00000341485 PLSCR1O15162 318 aa17.84■□□□□ 0.45
TPM3-208ENST00000341485 ANKRD1Q15327 319 aa17.84■□□□□ 0.45
TPM3-208ENST00000341485 PDLIM2Q96JY6 352 aa17.84■□□□□ 0.45
TPM3-208ENST00000341485 MPHOSPH8Q99549 860 aa17.84■□□□□ 0.45
TPM3-208ENST00000341485 RIC1Q4ADV7 1423 aa17.83■□□□□ 0.45
TPM3-208ENST00000341485 IGHMBP2P38935 993 aaKnown RBP17.83■□□□□ 0.45
TPM3-208ENST00000341485 MCMDC2Q4G0Z9 681 aa17.83■□□□□ 0.45
TPM3-208ENST00000341485 GORABQ5T7V8 394 aa17.83■□□□□ 0.45
TPM3-208ENST00000341485 TPTE2Q6XPS3 522 aa17.83■□□□□ 0.45
TPM3-208ENST00000341485 KBTBD3Q8NAB2 608 aa17.83■□□□□ 0.45
TPM3-208ENST00000341485 TSPY26PQ9H489 355 aa17.83■□□□□ 0.45
TPM3-208ENST00000341485 ANO8Q9HCE9 1232 aaPredicted RBP17.83■□□□□ 0.45
TPM3-208ENST00000341485 SEC31BQ9NQW1 1179 aa17.83■□□□□ 0.45
TPM3-208ENST00000341485 RTL9Q8NET4 1388 aa17.83■□□□□ 0.44
TPM3-208ENST00000341485 PROM2Q8N271 834 aa17.83■□□□□ 0.44
TPM3-208ENST00000341485 FIBPO43427 364 aa17.82■□□□□ 0.44
TPM3-208ENST00000341485 UBE2HP62256 183 aa17.82■□□□□ 0.44
TPM3-208ENST00000341485 U3KPZ7 1027 aaPredicted RBP17.82■□□□□ 0.44
TPM3-208ENST00000341485 LRP5O75197 1615 aa17.82■□□□□ 0.44
TPM3-208ENST00000341485 MROH5Q6ZUA9 1318 aa17.82■□□□□ 0.44
TPM3-208ENST00000341485 VPS37CA5D8V6 355 aaPredicted RBP17.81■□□□□ 0.44
TPM3-208ENST00000341485 DNM1Q05193 864 aaKnown RBP17.81■□□□□ 0.44
TPM3-208ENST00000341485 KRT32Q14532 448 aa17.81■□□□□ 0.44
TPM3-208ENST00000341485 ATP2B3Q16720 1220 aa17.81■□□□□ 0.44
TPM3-208ENST00000341485 CDC5LQ99459 802 aaKnown RBP17.81■□□□□ 0.44
TPM3-208ENST00000341485 CARMIL3Q8ND23 1372 aa17.81■□□□□ 0.44
TPM3-208ENST00000341485 ABCC12Q96J65 1359 aa17.81■□□□□ 0.44
TPM3-208ENST00000341485 CCDC158Q5M9N0 1113 aa17.81■□□□□ 0.44
TPM3-208ENST00000341485 SLC10A5Q5PT55 438 aa17.81■□□□□ 0.44
TPM3-208ENST00000341485 RNF214Q8ND24 703 aa17.81■□□□□ 0.44
TPM3-208ENST00000341485 XAGE2Q96GT9 111 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms