RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 DCTPP1Q9H773 170 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 WTAPQ15007 396 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 DLGAP5Q15398 846 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 CC2D2BQ6DHV5 1058 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 BAG4O95429 457 aaKnown RBP11.86□□□□□ -0.51
USP54-201ENST00000339859 GNAQP50148 359 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 TNFAIP1Q13829 316 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 NPR1P16066 1061 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 NLRP5P59047 1200 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 CCDC93Q567U6 631 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 ZNF594Q96JF6 807 aaPredicted RBP11.86□□□□□ -0.51
USP54-201ENST00000339859 NEK1Q96PY6 1258 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 SDF4Q9BRK5 362 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 HELLSQ9NRZ9 838 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 RTL9Q8NET4 1388 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 KINO60870 393 aaKnown RBP11.85□□□□□ -0.51
USP54-201ENST00000339859 LETM1O95202 739 aaPredicted RBP11.85□□□□□ -0.51
USP54-201ENST00000339859 EN1Q05925 392 aaPredicted RBP11.85□□□□□ -0.51
USP54-201ENST00000339859 JAG2Q9Y219 1238 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 XDHP47989 1333 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 TAF5LO75529 589 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 CLEC4GQ6UXB4 293 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 ZNF408Q9H9D4 720 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 CYP27B1O15528 508 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 SSFA2P28290 1259 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 HAND2P61296 217 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 RAB34Q9BZG1 259 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 BBOX1O75936 387 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 HMGN5P82970 282 aaKnown RBP11.85□□□□□ -0.51
USP54-201ENST00000339859 GRIPAP1Q4V328 841 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 MIGA1Q8NAN2 632 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 ATG3Q9NT62 314 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 TMEM266Q2M3C6 531 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 RTKN2Q8IZC4 609 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 ZBTB40Q9NUA8 1239 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 CFAP45Q9UL16 551 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 KIF1AQ12756 1690 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 RAD50Q92878 1312 aa11.85□□□□□ -0.51
USP54-201ENST00000339859 TXNRD1Q16881 649 aa11.84□□□□□ -0.51
USP54-201ENST00000339859 TSHZ3Q63HK5 1081 aa11.84□□□□□ -0.51
USP54-201ENST00000339859 CALM1P0DP23 149 aa11.84□□□□□ -0.51
USP54-201ENST00000339859 CALM2P0DP24 149 aa11.84□□□□□ -0.51
USP54-201ENST00000339859 CALM3P0DP25 149 aa11.84□□□□□ -0.51
USP54-201ENST00000339859 STX8Q9UNK0 236 aa11.84□□□□□ -0.51
USP54-201ENST00000339859 STIM1Q13586 685 aa11.84□□□□□ -0.51
USP54-201ENST00000339859 MAGEC2Q9UBF1 373 aaPredicted RBP11.84□□□□□ -0.51
USP54-201ENST00000339859 LEMD3Q9Y2U8 911 aa11.84□□□□□ -0.51
USP54-201ENST00000339859 DCPSQ96C86 337 aaKnown RBP11.84□□□□□ -0.51
USP54-201ENST00000339859 PNPLA6Q8IY17 1366 aa11.84□□□□□ -0.51
USP54-201ENST00000339859 CCDC194A0A1B0GVG4 234 aa11.84□□□□□ -0.51
USP54-201ENST00000339859 ZBTB7BO15156 539 aaPredicted RBP11.84□□□□□ -0.51
USP54-201ENST00000339859 METAP2P50579 478 aaKnown RBP eCLIP11.84□□□□□ -0.51
USP54-201ENST00000339859 COL15A1P39059 1388 aa11.84□□□□□ -0.51
USP54-201ENST00000339859 ERFEQ4G0M1 354 aa11.83□□□□□ -0.51
USP54-201ENST00000339859 SPATA5Q8NB90 893 aa11.83□□□□□ -0.51
USP54-201ENST00000339859 MASTLQ96GX5 879 aa11.83□□□□□ -0.51
USP54-201ENST00000339859 SCLT1Q96NL6 688 aa11.83□□□□□ -0.51
USP54-201ENST00000339859 ARHGEF10LQ9HCE6 1279 aa11.83□□□□□ -0.51
USP54-201ENST00000339859 PIM2Q9P1W9 311 aa11.83□□□□□ -0.52
USP54-201ENST00000339859 FBXO3Q9UK99 471 aa11.83□□□□□ -0.52
USP54-201ENST00000339859 KRT85P78386 507 aa11.83□□□□□ -0.52
USP54-201ENST00000339859 NMIQ13287 307 aaPredicted RBP11.83□□□□□ -0.52
USP54-201ENST00000339859 ZHX3Q9H4I2 956 aa11.83□□□□□ -0.52
USP54-201ENST00000339859 DACH1Q9UI36 760 aa11.83□□□□□ -0.52
USP54-201ENST00000339859 RNF123Q5XPI4 1314 aa11.83□□□□□ -0.52
USP54-201ENST00000339859 IPO7O95373 1038 aaKnown RBP11.83□□□□□ -0.52
USP54-201ENST00000339859 MYCNP04198 464 aaPredicted RBP11.83□□□□□ -0.52
USP54-201ENST00000339859 CEBPZQ03701 1054 aaKnown RBP11.83□□□□□ -0.52
USP54-201ENST00000339859 VAT1LQ9HCJ6 419 aa11.83□□□□□ -0.52
USP54-201ENST00000339859 NARFQ9UHQ1 456 aa11.83□□□□□ -0.52
USP54-201ENST00000339859 AOX1Q06278 1338 aa11.83□□□□□ -0.52
USP54-201ENST00000339859 MATR3P43243 847 aaKnown RBP eCLIP11.82□□□□□ -0.52
USP54-201ENST00000339859 CCDC125Q86Z20 511 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 MMP10P09238 476 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 TEKT1Q969V4 418 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 C8orf76Q96K31 380 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 UBR1Q8IWV7 1749 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 CARMIL3Q8ND23 1372 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 KCNQ4P56696 695 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 TTLL6Q8N841 843 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 CCDC39Q9UFE4 941 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 USP32Q8NFA0 1604 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 IGHDP01880 384 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 ME1P48163 572 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 DDX11Q96FC9 970 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 MROH1Q8NDA8 1641 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 MBD4O95243 580 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 SDSP20132 328 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 CCDC148Q8NFR7 591 aa11.82□□□□□ -0.52
USP54-201ENST00000339859 TBC1D9Q6ZT07 1266 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 CCDC83Q8IWF9 413 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 CEP57L1Q8IYX8 460 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 SRP68Q9UHB9 627 aaKnown RBP11.81□□□□□ -0.52
USP54-201ENST00000339859 SAP30BPQ9UHR5 308 aaKnown RBP11.81□□□□□ -0.52
USP54-201ENST00000339859 CCDC171Q6TFL3 1326 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 IARSP41252 1262 aaKnown RBP11.81□□□□□ -0.52
USP54-201ENST00000339859 GTF2IP78347 998 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 PLS1Q14651 629 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 SPON1Q9HCB6 807 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 BEND3Q5T5X7 828 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms