RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 EVI5LQ96CN4 794 aa12.91□□□□□ -0.34
RTN3-201ENST00000338850 ECHDC1Q9NTX5 307 aa12.91□□□□□ -0.34
RTN3-201ENST00000338850 ERBB4Q15303 1308 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 PI4KAP2A4QPH2 592 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 POTECB2RU33 542 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 ZNF500O60304 480 aaPredicted RBP12.9□□□□□ -0.34
RTN3-201ENST00000338850 PRPF40AO75400 957 aaKnown RBP12.9□□□□□ -0.34
RTN3-201ENST00000338850 MYL6BP14649 208 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 VPS53Q5VIR6 699 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 KIF6Q6ZMV9 814 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 KIAA1211Q6ZU35 1233 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 PI4KAP1Q8N8J0 262 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 SMC1BQ8NDV3 1235 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 DDX21Q9NR30 783 aaKnown RBP eCLIP12.9□□□□□ -0.34
RTN3-201ENST00000338850 TMEM63CQ9P1W3 806 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 NOL7Q9UMY1 257 aaKnown RBP12.9□□□□□ -0.34
RTN3-201ENST00000338850 LIMCH1Q9UPQ0 1083 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 SNX14Q9Y5W7 946 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 ABCC12Q96J65 1359 aa12.9□□□□□ -0.34
RTN3-201ENST00000338850 CCDC171Q6TFL3 1326 aa12.89□□□□□ -0.35
RTN3-201ENST00000338850 CCDC88AQ3V6T2 1871 aa12.89□□□□□ -0.35
RTN3-201ENST00000338850 NBPF7P0C2Y1 421 aaPredicted RBP12.89□□□□□ -0.35
RTN3-201ENST00000338850 GTF2E1P29083 439 aaPredicted RBP12.89□□□□□ -0.35
RTN3-201ENST00000338850 HTRA3P83110 453 aa12.89□□□□□ -0.35
RTN3-201ENST00000338850 CCDC93Q567U6 631 aa12.89□□□□□ -0.35
RTN3-201ENST00000338850 DPY19L2Q6NUT2 758 aa12.89□□□□□ -0.35
RTN3-201ENST00000338850 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.89□□□□□ -0.35
RTN3-201ENST00000338850 LRP10Q7Z4F1 713 aa12.89□□□□□ -0.35
RTN3-201ENST00000338850 ZBTB3Q9H5J0 574 aa12.89□□□□□ -0.35
RTN3-201ENST00000338850 UBN2Q6ZU65 1347 aa12.88□□□□□ -0.35
RTN3-201ENST00000338850 WDR90Q96KV7 1748 aa12.88□□□□□ -0.35
RTN3-201ENST00000338850 NCLP19338 710 aaKnown RBP12.88□□□□□ -0.35
RTN3-201ENST00000338850 GPTP24298 496 aa12.88□□□□□ -0.35
RTN3-201ENST00000338850 PDIA6Q15084 440 aa12.88□□□□□ -0.35
RTN3-201ENST00000338850 CRY2Q49AN0 593 aa12.88□□□□□ -0.35
RTN3-201ENST00000338850 OLFM4Q6UX06 510 aa12.88□□□□□ -0.35
RTN3-201ENST00000338850 NUTM1Q86Y26 1132 aa12.88□□□□□ -0.35
RTN3-201ENST00000338850 NYXQ9GZU5 481 aa12.88□□□□□ -0.35
RTN3-201ENST00000338850 RBSNQ9H1K0 784 aa12.88□□□□□ -0.35
RTN3-201ENST00000338850 IL1RAPL2Q9NP60 686 aa12.88□□□□□ -0.35
RTN3-201ENST00000338850 DICER1Q9UPY3 1922 aaKnown RBP12.88□□□□□ -0.35
RTN3-201ENST00000338850 RIC1Q4ADV7 1423 aa12.88□□□□□ -0.35
RTN3-201ENST00000338850 CACNA1SQ13698 1873 aa12.87□□□□□ -0.35
RTN3-201ENST00000338850 MED23Q9ULK4 1368 aa12.87□□□□□ -0.35
RTN3-201ENST00000338850 OFD1O75665 1012 aa12.87□□□□□ -0.35
RTN3-201ENST00000338850 FKBP4Q02790 459 aaKnown RBP eCLIP12.87□□□□□ -0.35
RTN3-201ENST00000338850 TSGA10IPQ3SY00 556 aa12.87□□□□□ -0.35
RTN3-201ENST00000338850 TSHZ3Q63HK5 1081 aa12.87□□□□□ -0.35
RTN3-201ENST00000338850 GIGYF2Q6Y7W6 1299 aaKnown RBP12.87□□□□□ -0.35
RTN3-201ENST00000338850 ZNF34Q8IZ26 560 aa12.87□□□□□ -0.35
RTN3-201ENST00000338850 ZSWIM6Q9HCJ5 1215 aa12.87□□□□□ -0.35
RTN3-201ENST00000338850 DIAPH3Q9NSV4 1193 aa12.87□□□□□ -0.35
RTN3-201ENST00000338850 MYH15Q9Y2K3 1946 aa12.87□□□□□ -0.35
RTN3-201ENST00000338850 NUP98P52948 1817 aa12.86□□□□□ -0.35
RTN3-201ENST00000338850 GRM8O00222 908 aa12.86□□□□□ -0.35
RTN3-201ENST00000338850 DDNO94850 711 aaPredicted RBP12.86□□□□□ -0.35
RTN3-201ENST00000338850 ZSCAN22P10073 491 aaPredicted RBP12.86□□□□□ -0.35
RTN3-201ENST00000338850 EIF2S2P20042 333 aaKnown RBP12.86□□□□□ -0.35
RTN3-201ENST00000338850 MSNP26038 577 aaKnown RBP12.86□□□□□ -0.35
RTN3-201ENST00000338850 ALDH1B1P30837 517 aa12.86□□□□□ -0.35
RTN3-201ENST00000338850 PROSER3Q2NL68 480 aa12.86□□□□□ -0.35
RTN3-201ENST00000338850 SUSD4Q5VX71 490 aa12.86□□□□□ -0.35
RTN3-201ENST00000338850 IL25Q9H293 177 aa12.86□□□□□ -0.35
RTN3-201ENST00000338850 TSPY26PQ9H489 355 aa12.86□□□□□ -0.35
RTN3-201ENST00000338850 HMG20BQ9P0W2 317 aa12.86□□□□□ -0.35
RTN3-201ENST00000338850 CCDC39Q9UFE4 941 aa12.86□□□□□ -0.35
RTN3-201ENST00000338850 SNED1Q8TER0 1413 aa12.86□□□□□ -0.35
RTN3-201ENST00000338850 NTSR2O95665 410 aa12.85□□□□□ -0.35
RTN3-201ENST00000338850 ANXA1P04083 346 aa12.85□□□□□ -0.35
RTN3-201ENST00000338850 HOXA10P31260 410 aaPredicted RBP12.85□□□□□ -0.35
RTN3-201ENST00000338850 UBE2HP62256 183 aa12.85□□□□□ -0.35
RTN3-201ENST00000338850 NECTIN1Q15223 517 aa12.85□□□□□ -0.35
RTN3-201ENST00000338850 ANKRD1Q15327 319 aa12.85□□□□□ -0.35
RTN3-201ENST00000338850 CCDC183Q5T5S1 534 aa12.85□□□□□ -0.35
RTN3-201ENST00000338850 RTKN2Q8IZC4 609 aa12.85□□□□□ -0.35
RTN3-201ENST00000338850 NECTIN2Q92692 538 aa12.85□□□□□ -0.35
RTN3-201ENST00000338850 KLRG1Q96E93 195 aa12.85□□□□□ -0.35
RTN3-201ENST00000338850 ZNF277Q9NRM2 450 aaPredicted RBP12.85□□□□□ -0.35
RTN3-201ENST00000338850 C9orf78Q9NZ63 289 aaPredicted RBP12.85□□□□□ -0.35
RTN3-201ENST00000338850 ZKSCAN5Q9Y2L8 839 aa12.85□□□□□ -0.35
RTN3-201ENST00000338850 MAP3K2Q9Y2U5 619 aa12.85□□□□□ -0.35
RTN3-201ENST00000338850 STX6O43752 255 aa12.84□□□□□ -0.35
RTN3-201ENST00000338850 F13A1P00488 732 aa12.84□□□□□ -0.35
RTN3-201ENST00000338850 IFIT2P09913 472 aaKnown RBP12.84□□□□□ -0.35
RTN3-201ENST00000338850 PSMA5P28066 241 aa12.84□□□□□ -0.35
RTN3-201ENST00000338850 AK2P54819 239 aa12.84□□□□□ -0.35
RTN3-201ENST00000338850 PARP10Q53GL7 1025 aa12.84□□□□□ -0.35
RTN3-201ENST00000338850 ELP1O95163 1332 aa12.84□□□□□ -0.35
RTN3-201ENST00000338850 ZKSCAN1P17029 563 aaPredicted RBP12.83□□□□□ -0.36
RTN3-201ENST00000338850 PDCP20941 246 aa12.83□□□□□ -0.36
RTN3-201ENST00000338850 OS9Q13438 667 aaPredicted RBP12.83□□□□□ -0.36
RTN3-201ENST00000338850 RNF20Q5VTR2 975 aa12.83□□□□□ -0.36
RTN3-201ENST00000338850 C3orf67Q6ZVT6 689 aa12.83□□□□□ -0.36
RTN3-201ENST00000338850 RUFY3Q7L099 469 aa12.83□□□□□ -0.36
RTN3-201ENST00000338850 SYNE4Q8N205 404 aa12.83□□□□□ -0.36
RTN3-201ENST00000338850 JMYQ8N9B5 988 aa12.83□□□□□ -0.36
RTN3-201ENST00000338850 RPGRQ92834 1020 aaKnown RBP12.83□□□□□ -0.36
RTN3-201ENST00000338850 MAP4K1Q92918 833 aa12.83□□□□□ -0.36
RTN3-201ENST00000338850 L3MBTL3Q96JM7 780 aaPredicted RBP12.83□□□□□ -0.36
RTN3-201ENST00000338850 UPF3BQ9BZI7 483 aaKnown RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms