RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 ARID4AP29374 1257 aaPredicted RBP17.77■□□□□ 0.43
CBX3-201ENST00000337620 CRAMP1Q96RY5 1269 aa17.77■□□□□ 0.43
CBX3-201ENST00000337620 ARAP2Q8WZ64 1704 aa17.76■□□□□ 0.43
CBX3-201ENST00000337620 ANKRD31Q8N7Z5 1873 aa17.76■□□□□ 0.43
CBX3-201ENST00000337620 BBOX1O75936 387 aa17.76■□□□□ 0.43
CBX3-201ENST00000337620 SLC51AQ86UW1 340 aa17.76■□□□□ 0.43
CBX3-201ENST00000337620 SRGNP10124 158 aa17.75■□□□□ 0.43
CBX3-201ENST00000337620 GYG1P46976 350 aa17.75■□□□□ 0.43
CBX3-201ENST00000337620 IPO9Q96P70 1041 aaKnown RBP17.75■□□□□ 0.43
CBX3-201ENST00000337620 A0A1B0GUL6 1792 aa17.75■□□□□ 0.43
CBX3-201ENST00000337620 A0A0D9SFI3 127 aa17.75■□□□□ 0.43
CBX3-201ENST00000337620 CHGBP05060 677 aa17.75■□□□□ 0.43
CBX3-201ENST00000337620 CAVIN4Q5BKX8 364 aa17.75■□□□□ 0.43
CBX3-201ENST00000337620 KIAA1211Q6ZU35 1233 aa17.75■□□□□ 0.43
CBX3-201ENST00000337620 VPS37DQ86XT2 251 aa17.75■□□□□ 0.43
CBX3-201ENST00000337620 DDRGK1Q96HY6 314 aa17.75■□□□□ 0.43
CBX3-201ENST00000337620 ZNF804BA4D1E1 1349 aa17.74■□□□□ 0.43
CBX3-201ENST00000337620 NPR1P16066 1061 aa17.74■□□□□ 0.43
CBX3-201ENST00000337620 HMG20BQ9P0W2 317 aa17.74■□□□□ 0.43
CBX3-201ENST00000337620 RASGRF1Q13972 1273 aa17.74■□□□□ 0.43
CBX3-201ENST00000337620 SPATA5Q8NB90 893 aa17.74■□□□□ 0.43
CBX3-201ENST00000337620 RFX7Q2KHR2 1363 aa17.73■□□□□ 0.43
CBX3-201ENST00000337620 XDHP47989 1333 aa17.73■□□□□ 0.43
CBX3-201ENST00000337620 CYP2E1P05181 493 aaPredicted RBP17.73■□□□□ 0.43
CBX3-201ENST00000337620 KLRK1P26718 216 aa17.73■□□□□ 0.43
CBX3-201ENST00000337620 SLC16A10Q8TF71 515 aa17.73■□□□□ 0.43
CBX3-201ENST00000337620 GNL3LQ9NVN8 582 aaKnown RBP17.73■□□□□ 0.43
CBX3-201ENST00000337620 NSFL1CQ9UNZ2 370 aaKnown RBP17.73■□□□□ 0.43
CBX3-201ENST00000337620 IQSEC3Q9UPP2 1182 aaPredicted RBP17.73■□□□□ 0.43
CBX3-201ENST00000337620 AKAP11Q9UKA4 1901 aa17.72■□□□□ 0.43
CBX3-201ENST00000337620 ALDH1B1P30837 517 aa17.72■□□□□ 0.43
CBX3-201ENST00000337620 TTF1Q15361 905 aaPredicted RBP17.72■□□□□ 0.43
CBX3-201ENST00000337620 C2CD5Q86YS7 1000 aa17.72■□□□□ 0.43
CBX3-201ENST00000337620 UPF1Q92900 1129 aaKnown RBP eCLIP17.72■□□□□ 0.431e-20■□□□□ 9.9
CBX3-201ENST00000337620 ZNF622Q969S3 477 aaKnown RBP eCLIP17.72■□□□□ 0.432e-21■■□□□ 12.9
CBX3-201ENST00000337620 MASTLQ96GX5 879 aa17.72■□□□□ 0.43
CBX3-201ENST00000337620 FAM84BQ96KN1 310 aaPredicted RBP17.72■□□□□ 0.43
CBX3-201ENST00000337620 PPEF1O14829 653 aaPredicted RBP17.72■□□□□ 0.43
CBX3-201ENST00000337620 GPSM2P81274 684 aa17.72■□□□□ 0.43
CBX3-201ENST00000337620 LRRFIP1Q32MZ4 808 aaKnown RBP17.72■□□□□ 0.43
CBX3-201ENST00000337620 SLFNL1Q499Z3 407 aa17.72■□□□□ 0.43
CBX3-201ENST00000337620 LSG1Q9H089 658 aaKnown RBP17.72■□□□□ 0.43
CBX3-201ENST00000337620 LEMD3Q9Y2U8 911 aa17.72■□□□□ 0.43
CBX3-201ENST00000337620 RAD50Q92878 1312 aa17.71■□□□□ 0.43
CBX3-201ENST00000337620 H0YIN7 160 aa17.71■□□□□ 0.43
CBX3-201ENST00000337620 RNF113AO15541 343 aaKnown RBP17.71■□□□□ 0.43
CBX3-201ENST00000337620 MCCP23508 829 aa17.71■□□□□ 0.43
CBX3-201ENST00000337620 SEC62Q99442 399 aaKnown RBP17.71■□□□□ 0.43
CBX3-201ENST00000337620 TICAM2Q86XR7 235 aa17.71■□□□□ 0.42
CBX3-201ENST00000337620 KIF2CQ99661 725 aa17.71■□□□□ 0.42
CBX3-201ENST00000337620 PIH1D3Q9NQM4 214 aaKnown RBP17.71■□□□□ 0.42
CBX3-201ENST00000337620 IDH1O75874 414 aaKnown RBP17.7■□□□□ 0.42
CBX3-201ENST00000337620 HIBADHP31937 336 aaKnown RBP17.7■□□□□ 0.42
CBX3-201ENST00000337620 MCMDC2Q4G0Z9 681 aa17.7■□□□□ 0.42
CBX3-201ENST00000337620 TMC4Q7Z404 712 aa17.7■□□□□ 0.42
CBX3-201ENST00000337620 FBXO33Q7Z6M2 555 aa17.7■□□□□ 0.42
CBX3-201ENST00000337620 ZNF589Q86UQ0 364 aaPredicted RBP17.7■□□□□ 0.42
CBX3-201ENST00000337620 FRAT2O75474 233 aaPredicted RBP17.69■□□□□ 0.42
CBX3-201ENST00000337620 PTH1RQ03431 593 aa17.69■□□□□ 0.42
CBX3-201ENST00000337620 TXNRD3Q86VQ6 643 aa17.69■□□□□ 0.42
CBX3-201ENST00000337620 SP8Q8IXZ3 490 aa17.69■□□□□ 0.42
CBX3-201ENST00000337620 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.69■□□□□ 0.42
CBX3-201ENST00000337620 EPB41L2O43491 1005 aaKnown RBP17.69■□□□□ 0.42
CBX3-201ENST00000337620 UFL1O94874 794 aa17.69■□□□□ 0.42
CBX3-201ENST00000337620 ZBTB7AO95365 584 aa17.69■□□□□ 0.42
CBX3-201ENST00000337620 ZFYP08048 801 aaPredicted RBP17.69■□□□□ 0.42
CBX3-201ENST00000337620 CCDC129Q6ZRS4 1044 aa17.69■□□□□ 0.42
CBX3-201ENST00000337620 HELLSQ9NRZ9 838 aa17.69■□□□□ 0.42
CBX3-201ENST00000337620 GGA1Q9UJY5 639 aa17.69■□□□□ 0.42
CBX3-201ENST00000337620 ATP2B4P23634 1241 aa17.68■□□□□ 0.42
CBX3-201ENST00000337620 CHRNA5P30532 468 aa17.68■□□□□ 0.42
CBX3-201ENST00000337620 WASHC4Q2M389 1173 aa17.68■□□□□ 0.42
CBX3-201ENST00000337620 ZMYM1Q5SVZ6 1142 aa17.68■□□□□ 0.42
CBX3-201ENST00000337620 GPR101Q96P66 508 aaPredicted RBP17.68■□□□□ 0.42
CBX3-201ENST00000337620 ATP6V0A2Q9Y487 856 aa17.68■□□□□ 0.42
CBX3-201ENST00000337620 MED23Q9ULK4 1368 aa17.68■□□□□ 0.42
CBX3-201ENST00000337620 CCDC171Q6TFL3 1326 aa17.68■□□□□ 0.42
CBX3-201ENST00000337620 COL11A2P13942 1736 aaPredicted RBP17.68■□□□□ 0.42
CBX3-201ENST00000337620 R3HDM1Q15032 1099 aaKnown RBP17.68■□□□□ 0.42
CBX3-201ENST00000337620 SLC9C2Q5TAH2 1124 aa17.68■□□□□ 0.42
CBX3-201ENST00000337620 ZSCAN25Q6NSZ9 544 aa17.68■□□□□ 0.42
CBX3-201ENST00000337620 DAXXQ9UER7 740 aaPredicted RBP17.68■□□□□ 0.42
CBX3-201ENST00000337620 TMX4Q9H1E5 349 aaPredicted RBP17.67■□□□□ 0.42
CBX3-201ENST00000337620 PODXL2Q9NZ53 605 aa17.67■□□□□ 0.42
CBX3-201ENST00000337620 DENND2AQ9ULE3 1009 aa17.67■□□□□ 0.42
CBX3-201ENST00000337620 C6orf229H3BNL8 230 aa17.66■□□□□ 0.42
CBX3-201ENST00000337620 SLC4A3P48751 1232 aa17.66■□□□□ 0.42
CBX3-201ENST00000337620 STYK1Q6J9G0 422 aa17.66■□□□□ 0.42
CBX3-201ENST00000337620 OLFM4Q6UX06 510 aa17.66■□□□□ 0.42
CBX3-201ENST00000337620 PALD1Q9ULE6 856 aa17.66■□□□□ 0.42
CBX3-201ENST00000337620 ATF5Q9Y2D1 282 aaPredicted RBP17.66■□□□□ 0.42
CBX3-201ENST00000337620 IRS2Q9Y4H2 1338 aa17.66■□□□□ 0.42
CBX3-201ENST00000337620 HSPA4P34932 840 aa17.66■□□□□ 0.42
CBX3-201ENST00000337620 BECN1Q14457 450 aa17.66■□□□□ 0.42
CBX3-201ENST00000337620 TBC1D16Q8TBP0 767 aa17.66■□□□□ 0.42
CBX3-201ENST00000337620 OSBP2Q969R2 916 aa17.66■□□□□ 0.42
CBX3-201ENST00000337620 POLLQ9UGP5 575 aa17.66■□□□□ 0.42
CBX3-201ENST00000337620 ADD2P35612 726 aa17.65■□□□□ 0.42
CBX3-201ENST00000337620 MAP3K12Q12852 859 aa17.65■□□□□ 0.42
CBX3-201ENST00000337620 MAP4K1Q92918 833 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms