RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 SCAF11Q99590 1463 aaKnown RBP15.44■□□□□ 0.06
CHRFAM7A-201ENST00000299847 F13A1P00488 732 aa15.44■□□□□ 0.06
CHRFAM7A-201ENST00000299847 TNNI2P48788 182 aa15.44■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CLEC11AQ9Y240 323 aa15.44■□□□□ 0.06
CHRFAM7A-201ENST00000299847 NOLC1Q14978 699 aaKnown RBP eCLIP15.43■□□□□ 0.06
CHRFAM7A-201ENST00000299847 ZGPATQ8N5A5 531 aaKnown RBP15.43■□□□□ 0.06
CHRFAM7A-201ENST00000299847 UBXN1Q04323 297 aa15.43■□□□□ 0.06
CHRFAM7A-201ENST00000299847 ERMNQ8TAM6 284 aa15.43■□□□□ 0.06
CHRFAM7A-201ENST00000299847 PABPN1LA6NDY0 278 aaKnown RBP15.43■□□□□ 0.06
CHRFAM7A-201ENST00000299847 GRM8O00222 908 aa15.43■□□□□ 0.06
CHRFAM7A-201ENST00000299847 PRIM1P49642 420 aaKnown RBP15.43■□□□□ 0.06
CHRFAM7A-201ENST00000299847 SPECC1LQ69YQ0 1117 aa15.43■□□□□ 0.06
CHRFAM7A-201ENST00000299847 GUCA1BQ9UMX6 200 aa15.43■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CTAGE15A4D2H0 777 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 RHOXF2BP0C7M4 288 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CTAGE8P0CG41 777 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 BMS1Q14692 1282 aaKnown RBP15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CTAGE6Q86UF2 777 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CTAGE4Q8IX94 777 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 C8orf37Q96NL8 207 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 RHOXF2Q9BQY4 288 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 TEX13AQ9BXU3 409 aaPredicted RBP15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 AK2P54819 239 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CCDC155Q8N6L0 562 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 NBPF7P0C2Y1 421 aaPredicted RBP15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 IFT81Q8WYA0 676 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 IQGAP2Q13576 1575 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 GOLGA6L9A6NEM1 432 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CYLC1P35663 651 aaPredicted RBP15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 UVSSAQ2YD98 709 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 TSPYL6Q8N831 410 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 TCHPQ9BT92 498 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 PAXBP1Q9Y5B6 917 aa15.42■□□□□ 0.06
CHRFAM7A-201ENST00000299847 KCNG4Q8TDN1 519 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 IGSF3O75054 1194 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CKAP4Q07065 602 aaKnown RBP15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 MCM9Q9NXL9 1143 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 IFI16Q16666 785 aaKnown RBP15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CCDC129Q6ZRS4 1044 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CCDC25Q86WR0 208 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 ATRIPQ8WXE1 791 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 SIRT1Q96EB6 747 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 KRT2P35908 639 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 NFATC2IPQ8NCF5 419 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CCDC171Q6TFL3 1326 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 GRIPAP1Q4V328 841 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 FBF1Q8TES7 1133 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 LRRC27Q9C0I9 530 aa15.41■□□□□ 0.06
CHRFAM7A-201ENST00000299847 PYM1Q9BRP8 204 aaKnown RBP15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 MTHFSDQ2M296 383 aaKnown RBP15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 PPIP5K1Q6PFW1 1433 aa15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 PLCB3Q01970 1234 aa15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 UTP14AQ9BVJ6 771 aaKnown RBP15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 IQCGQ9H095 443 aaKnown RBP15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 KIF4AO95239 1232 aa15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 DCAF17Q5H9S7 520 aaPredicted RBP15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 PPP1R9BQ96SB3 815 aa15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 FAM13AO94988 1023 aa15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 DZIP3Q86Y13 1208 aaKnown RBP15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 CTAGE1Q96RT6 745 aa15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 NCOA1Q15788 1441 aa15.4■□□□□ 0.06
CHRFAM7A-201ENST00000299847 SPTLC2O15270 562 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 ZNF569Q5MCW4 686 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 PPM1EQ8WY54 764 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 EIF6P56537 245 aaKnown RBP15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 CNNM2Q9H8M5 875 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 IFNKQ9P0W0 207 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 SSX2IPQ9Y2D8 614 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 ATP8B2P98198 1209 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 TYRO3Q06418 890 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 EHBP1Q8NDI1 1231 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 SELENOOQ9BVL4 669 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 CTAGE9A4FU28 777 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 XRCC6P12956 609 aaKnown RBP eCLIP15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 CCT6AP40227 531 aaKnown RBP15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 RRP36Q96EU6 259 aaKnown RBP15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 FERMT1Q9BQL6 677 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 HARSP12081 509 aaKnown RBP15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 RAPGEF1Q13905 1077 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 CREB3L3Q68CJ9 461 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 CTNND2Q9UQB3 1225 aa15.39■□□□□ 0.05
CHRFAM7A-201ENST00000299847 MNAT1P51948 309 aa15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 EIF4A2Q14240 407 aaKnown RBP15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 ZNF174Q15697 407 aa15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 SYT10Q6XYQ8 523 aa15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 PROCA1Q8NCQ7 364 aaPredicted RBP15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 BICC1Q9H694 974 aaKnown RBP15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 PSMA7O14818 248 aa15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 HDAC1Q13547 482 aaPredicted RBP15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 BBXQ8WY36 941 aaPredicted RBP15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 VPS18Q9P253 973 aa15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 ZNF804AQ7Z570 1209 aa15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 MRRFQ96E11 262 aaKnown RBP15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 PTPDC1A2A3K4 754 aa15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 MAP3K9P80192 1104 aa15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 C14orf93Q9H972 538 aaKnown RBP15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 RNASE9P60153 205 aaKnown RBP15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 CCDC114Q96M63 670 aa15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 NLRP3Q96P20 1036 aa15.38■□□□□ 0.05
CHRFAM7A-201ENST00000299847 CCDC6Q16204 474 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms