RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 DBF4Q9UBU7 674 aaPredicted RBP8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 MAP3K2Q9Y2U5 619 aa8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 UBN2Q6ZU65 1347 aa8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 USP42Q9H9J4 1324 aaKnown RBP8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 ANKRD36CQ5JPF3 1778 aa8.27□□□□□ -1.08
DEPDC4-201ENST00000299185 N4BP2Q86UW6 1770 aaPredicted RBP8.27□□□□□ -1.08
DEPDC4-201ENST00000299185 TNRC6CQ9HCJ0 1690 aaKnown RBP8.27□□□□□ -1.08
DEPDC4-201ENST00000299185 COL24A1Q17RW2 1714 aa8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 QSER1Q2KHR3 1735 aa8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 CENPBP07199 599 aaPredicted RBP8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 CT47B1P0C2W7 299 aaPredicted RBP8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 IL6STP40189 918 aaPredicted RBP8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 SLC15A2Q16348 729 aa8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 CWF19L2Q2TBE0 894 aaKnown RBP8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 ALDH1L2Q3SY69 923 aa8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 SLC4A10Q6U841 1118 aa8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 TMEM57Q8N5G2 664 aa8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 MYD88Q99836 296 aa8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 TEX13AQ9BXU3 409 aaPredicted RBP8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 ATP13A2Q9NQ11 1180 aa8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 RTCBQ9Y3I0 505 aaKnown RBP8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 ABCC4O15439 1325 aa8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 MAP3K15Q6ZN16 1313 aa8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 KIF16BQ96L93 1317 aa8.27□□□□□ -1.09
DEPDC4-201ENST00000299185 AFDNP55196 1824 aaKnown RBP8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 CARMIL3Q8ND23 1372 aa8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 ABCC12Q96J65 1359 aa8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 PI4KAP2A4QPH2 592 aa8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 ZBTB7AO95365 584 aa8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 FMNL1O95466 1100 aaPredicted RBP8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 DDR1Q08345 913 aa8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 RC3H1Q5TC82 1133 aaKnown RBP8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 KIF6Q6ZMV9 814 aa8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 PI4KAP1Q8N8J0 262 aa8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 CRBNQ96SW2 442 aa8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 HYPKQ9NX55 129 aa8.26□□□□□ -1.09
DEPDC4-201ENST00000299185 COL4A1P02462 1669 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 NUP98P52948 1817 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 IGKV5-2P06315 115 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 SSFA2P28290 1259 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 RTL5Q5HYW3 569 aaPredicted RBP8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 ZKSCAN2Q63HK3 967 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 TBC1D9BQ66K14 1250 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 RIC3Q7Z5B4 369 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 SLC51AQ86UW1 340 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 SYNE4Q8N205 404 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 SNIP1Q8TAD8 396 aaKnown RBP8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 PXYLP1Q8TE99 480 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 DNAAF4Q8WXU2 420 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 KIFC2Q96AC6 838 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 TRIM47Q96LD4 638 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 C1orf115Q9H7X2 142 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 COG6Q9Y2V7 657 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 PXDNLA1KZ92 1463 aa8.25□□□□□ -1.09
DEPDC4-201ENST00000299185 ATP10DQ9P241 1426 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 WNT7AO00755 349 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 GYS1P13807 737 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 RFC4P35249 363 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 NFIXQ14938 502 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 MORN1Q5T089 497 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 TRAPPC3LQ5T215 181 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 KSR2Q6VAB6 950 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 ATF7IPQ6VMQ6 1270 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 ITPRIPQ8IWB1 547 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 PLBD2Q8NHP8 589 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 THAP11Q96EK4 314 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 NARFQ9UHQ1 456 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 RNF123Q5XPI4 1314 aa8.24□□□□□ -1.09
DEPDC4-201ENST00000299185 BEND3Q5T5X7 828 aa8.23□□□□□ -1.09
DEPDC4-201ENST00000299185 NUTM1Q86Y26 1132 aa8.23□□□□□ -1.09
DEPDC4-201ENST00000299185 FTSJ3Q8IY81 847 aaKnown RBP8.23□□□□□ -1.09
DEPDC4-201ENST00000299185 DZIP1LQ8IYY4 767 aaKnown RBP8.23□□□□□ -1.09
DEPDC4-201ENST00000299185 FAM160A2Q8N612 972 aaPredicted RBP8.23□□□□□ -1.09
DEPDC4-201ENST00000299185 EXOC6Q8TAG9 804 aa8.23□□□□□ -1.09
DEPDC4-201ENST00000299185 MEIS3Q99687 375 aa8.23□□□□□ -1.09
DEPDC4-201ENST00000299185 METTL22Q9BUU2 404 aaPredicted RBP8.23□□□□□ -1.09
DEPDC4-201ENST00000299185 API5Q9BZZ5 524 aaKnown RBP8.23□□□□□ -1.09
DEPDC4-201ENST00000299185 PTPRCP08575 1304 aa8.23□□□□□ -1.09
DEPDC4-201ENST00000299185 A0A087WZG4 1122 aa8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 NEURL1BA8MQ27 555 aa8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 DDX58O95786 925 aaKnown RBP8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 SNRPBP14678 240 aaKnown RBP8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 SMPD1P17405 629 aa8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 BRPF1P55201 1214 aaPredicted RBP8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 SUSD4Q5VX71 490 aa8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 GIGYF2Q6Y7W6 1299 aaKnown RBP8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 SLC16A10Q8TF71 515 aa8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 ISCA1Q9BUE6 129 aa8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 NIP7Q9Y221 180 aaKnown RBP eCLIP8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 COL11A2P13942 1736 aaPredicted RBP8.22□□□□□ -1.09
DEPDC4-201ENST00000299185 DDX60Q8IY21 1712 aaKnown RBP8.21□□□□□ -1.09
DEPDC4-201ENST00000299185 NTSR2O95665 410 aa8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 MMP10P09238 476 aa8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 TCIRG1Q13488 830 aa8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 EPHA10Q5JZY3 1008 aa8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 LCE2CQ5TA81 110 aa8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 UBE3BQ7Z3V4 1068 aa8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 NPM2Q86SE8 214 aaKnown RBP8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 NLRP10Q86W26 655 aa8.21□□□□□ -1.1
DEPDC4-201ENST00000299185 ZNF34Q8IZ26 560 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms