RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ZNF449Q6P9G9 518 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 HOMER3Q9NSC5 361 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 NPHP3Q7Z494 1330 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 ARHGEF17Q96PE2 2063 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-201ENST00000297405 ZNF500O60304 480 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-201ENST00000297405 TSPY2A6NKD2 308 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 TSPY3P0CV98 308 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 TSPY8P0CW00 308 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 TSPY1Q01534 308 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 APOBRQ0VD83 1088 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 P3H3Q8IVL6 736 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 ANGPTL3Q9Y5C1 460 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 CAMSAP2Q08AD1 1489 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 FBXO41Q8TF61 875 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 NUP155O75694 1391 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 EXOC6Q8TAG9 804 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 A0A087WUV0 522 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-201ENST00000297405 SMIM24O75264 130 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 SERPINI2O75830 405 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 ZRANB2O95218 330 aaKnown RBP eCLIP5.46□□□□□ -1.54
CSMD3-201ENST00000297405 FOXD4L5Q5VV16 416 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-201ENST00000297405 MMS22LQ6ZRQ5 1243 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 CCDC12Q8WUD4 166 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-201ENST00000297405 FOXD4L4Q8WXT5 416 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-201ENST00000297405 GNAI2P04899 355 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 MAGEA9P43362 315 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 KRR1Q13601 381 aaKnown RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 TSC22D1Q15714 1073 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 SRGAP1Q7Z6B7 1085 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 KDM5AP29375 1690 aaKnown RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 TP53BP1Q12888 1972 aaPredicted RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 DRP2Q13474 957 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 CCDC178Q5BJE1 867 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 GRAMD4Q6IC98 578 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 KIFC3Q9BVG8 833 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 VPS18Q9P253 973 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 TTF2Q9UNY4 1162 aaKnown RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 OTOFQ9HC10 1997 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 C10orf88Q9H8K7 445 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 BMP2KLQ5H9B9 411 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 NOL8Q76FK4 1167 aaKnown RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 SPTA1P02549 2419 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 CUL7Q14999 1698 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 ARHGAP10A1A4S6 786 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 PHBP35232 272 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 SERPINB10P48595 397 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 TRAF1Q13077 416 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 PDXDC1Q6P996 788 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 FAM177A1Q8N128 213 aaPredicted RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 TBC1D5Q92609 795 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 RUBCNQ92622 972 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 GOPCQ9HD26 462 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 DOPEY2Q9Y3R5 2298 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 RGL3Q3MIN7 710 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 CNKSR2Q8WXI2 1034 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 DNAJC13O75165 2243 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 MYOM3Q5VTT5 1437 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 AKAP6Q13023 2319 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 SLC4A10Q6U841 1118 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 NRDE2Q9H7Z3 1164 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 PARVBQ9HBI1 364 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 TAOK2Q9UL54 1235 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 IQSEC3Q9UPP2 1182 aaPredicted RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 ARHGEF9O43307 516 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 PSMC4P43686 418 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 LGSNQ5TDP6 509 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 CCDC25Q86WR0 208 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 NME8Q8N427 588 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 CNOT10Q9H9A5 744 aaKnown RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 PFDN4Q9NQP4 134 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 IQCA1LA6NCM1 817 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 XPCQ01831 940 aaPredicted RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 RBM27Q9P2N5 1060 aaKnown RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 PPP1R9AQ9ULJ8 1098 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 BRPF1P55201 1214 aaPredicted RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 FGFR1OP2Q9NVK5 253 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 MYO1AQ9UBC5 1043 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 SSX2IPQ9Y2D8 614 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 CTDP1Q9Y5B0 961 aaPredicted RBP5.45□□□□□ -1.54
CSMD3-201ENST00000297405 CTNNA2P26232 953 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 FBLN2P98095 1184 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 CCDC122Q5T0U0 273 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 VPS37DQ86XT2 251 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 RUNDC3BQ96NL0 473 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 COG6Q9Y2V7 657 aa5.45□□□□□ -1.54
CSMD3-201ENST00000297405 PABPN1LA6NDY0 278 aaKnown RBP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 CHUKO15111 745 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 HNRNPCL1O60812 293 aaKnown RBP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 ARHGAP4P98171 946 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 VWA3BQ502W6 1294 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 MAP3K1Q13233 1512 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 HFM1A2PYH4 1435 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 TRIM42Q8IWZ5 723 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 TMEM57Q8N5G2 664 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 CKAP5Q14008 2032 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 HARSP12081 509 aaKnown RBP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 STAG1Q8WVM7 1258 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 TXLNGQ9NUQ3 528 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms