RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 CREBRFQ8IUR6 639 aa12.16□□□□□ -0.46
SKA1-201ENST00000285116 TRIM5Q9C035 493 aa12.16□□□□□ -0.46
SKA1-201ENST00000285116 CEP135Q66GS9 1140 aa12.15□□□□□ -0.46
SKA1-201ENST00000285116 EVCP57679 992 aa12.15□□□□□ -0.46
SKA1-201ENST00000285116 IQCB1Q15051 598 aa12.15□□□□□ -0.46
SKA1-201ENST00000285116 FERMT3Q86UX7 667 aa12.15□□□□□ -0.46
SKA1-201ENST00000285116 KBTBD3Q8NAB2 608 aa12.15□□□□□ -0.46
SKA1-201ENST00000285116 XAGE3Q8WTP9 111 aa12.15□□□□□ -0.46
SKA1-201ENST00000285116 BRF1Q92994 677 aa12.15□□□□□ -0.46
SKA1-201ENST00000285116 FAM53CQ9NYF3 392 aa12.15□□□□□ -0.46
SKA1-201ENST00000285116 NR1I2O75469 434 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 PHKG2P15735 406 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 RBM6P78332 1123 aaKnown RBP12.14□□□□□ -0.47
SKA1-201ENST00000285116 EXOSC10Q01780 885 aaKnown RBP12.14□□□□□ -0.47
SKA1-201ENST00000285116 NAA30Q147X3 362 aaPredicted RBP12.14□□□□□ -0.47
SKA1-201ENST00000285116 ANKRD13DQ6ZTN6 518 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.14□□□□□ -0.47
SKA1-201ENST00000285116 NRBP1Q9UHY1 535 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 CYP21A2P08686 494 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 CDK11BP21127 795 aaKnown RBP12.14□□□□□ -0.47
SKA1-201ENST00000285116 ZNF165P49910 485 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 Q6ZUG5 572 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 DHX32Q7L7V1 743 aaKnown RBP12.14□□□□□ -0.47
SKA1-201ENST00000285116 MEGF6O75095 1541 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 C1orf167Q5SNV9 1468 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 SNRPA1P09661 255 aaKnown RBP12.14□□□□□ -0.47
SKA1-201ENST00000285116 PIP4K2AP48426 406 aaPredicted RBP12.14□□□□□ -0.47
SKA1-201ENST00000285116 PDE4CQ08493 712 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 STX1AQ16623 288 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 NSUN7Q8NE18 718 aaKnown RBP12.14□□□□□ -0.47
SKA1-201ENST00000285116 TIGD1Q96MW7 591 aa12.14□□□□□ -0.47
SKA1-201ENST00000285116 CCDC9Q9Y3X0 531 aaKnown RBP12.14□□□□□ -0.47
SKA1-201ENST00000285116 NWD2Q9ULI1 1742 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 SCRN1Q12765 414 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 TFCP2Q12800 502 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 CAMK4Q16566 473 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 SLFNL1Q499Z3 407 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 FAM173BQ6P4H8 233 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 COPS6Q7L5N1 327 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 CACTINQ8WUQ7 758 aaKnown RBP12.13□□□□□ -0.47
SKA1-201ENST00000285116 ZNF274Q96GC6 653 aaPredicted RBP12.13□□□□□ -0.47
SKA1-201ENST00000285116 MYD88Q99836 296 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 CLIP2Q9UDT6 1046 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 MYH7P12883 1935 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 JAK2O60674 1132 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 KMT5BQ4FZB7 885 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 ENGASEQ8NFI3 743 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 DDX54Q8TDD1 881 aaKnown RBP12.13□□□□□ -0.47
SKA1-201ENST00000285116 SIL1Q9H173 461 aa12.13□□□□□ -0.47
SKA1-201ENST00000285116 PLBD2Q8NHP8 589 aa12.12□□□□□ -0.47
SKA1-201ENST00000285116 ERO1AQ96HE7 468 aa12.12□□□□□ -0.47
SKA1-201ENST00000285116 ZNF396Q96N95 335 aaPredicted RBP12.12□□□□□ -0.47
SKA1-201ENST00000285116 ATG3Q9NT62 314 aa12.12□□□□□ -0.47
SKA1-201ENST00000285116 CALCOCO1Q9P1Z2 691 aa12.12□□□□□ -0.47
SKA1-201ENST00000285116 TFIP11Q9UBB9 837 aaKnown RBP12.12□□□□□ -0.47
SKA1-201ENST00000285116 DHX8Q14562 1220 aaKnown RBP12.12□□□□□ -0.47
SKA1-201ENST00000285116 ZMYM1Q5SVZ6 1142 aa12.12□□□□□ -0.47
SKA1-201ENST00000285116 CKAP2LQ8IYA6 745 aa12.12□□□□□ -0.47
SKA1-201ENST00000285116 BICD2Q8TD16 824 aa12.12□□□□□ -0.47
SKA1-201ENST00000285116 ZNF592Q92610 1267 aa12.12□□□□□ -0.47
SKA1-201ENST00000285116 DCAF5Q96JK2 942 aa12.12□□□□□ -0.47
SKA1-201ENST00000285116 ABCC12Q96J65 1359 aa12.12□□□□□ -0.47
SKA1-201ENST00000285116 C4AP0C0L4 1744 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 C4BP0C0L5 1744 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 H3BQV1 296 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 H7C1W4 665 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 IRX5P78411 483 aaPredicted RBP12.11□□□□□ -0.47
SKA1-201ENST00000285116 SLC20A2Q08357 652 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 AIMP1Q12904 312 aaKnown RBP12.11□□□□□ -0.47
SKA1-201ENST00000285116 IFFO2Q5TF58 517 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 TCEANC2Q96MN5 208 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 BPIFA3Q9BQP9 254 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 ZNF215Q9UL58 517 aaPredicted RBP12.11□□□□□ -0.47
SKA1-201ENST00000285116 DCCP43146 1447 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 A0A1W2PQ27 194 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 A0A1W2PQ64 194 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 A0A1W2PQD8 194 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 CTDNEP1O95476 244 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 FAM160A1Q05DH4 1040 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 SNW1Q13573 536 aaKnown RBP12.11□□□□□ -0.47
SKA1-201ENST00000285116 PTPN14Q15678 1187 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 STOX1Q6ZVD7 989 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 IFNL2Q8IZJ0 200 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 KLHDC4Q8TBB5 520 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 RAPGEF4Q8WZA2 1011 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 CHMP3Q9Y3E7 222 aa12.11□□□□□ -0.47
SKA1-201ENST00000285116 CIAO1O76071 339 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 TATP17735 454 aaPredicted RBP12.1□□□□□ -0.47
SKA1-201ENST00000285116 NYAP1Q6ZVC0 841 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 LRRC8AQ8IWT6 810 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 ZNF496Q96IT1 587 aaPredicted RBP12.1□□□□□ -0.47
SKA1-201ENST00000285116 FMNL2Q96PY5 1086 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 DNAJC25Q9H1X3 360 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 WDR19Q8NEZ3 1342 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 FOXO4P98177 505 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 CCDC144BQ3MJ40 725 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 CCDC144CPQ8IYA2 1237 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 DBNDD2Q9BQY9 259 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 KCNJ6P48051 423 aa12.1□□□□□ -0.47
SKA1-201ENST00000285116 STK3Q13188 491 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms