RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 SMC4Q9NTJ3 1288 aa18.26■□□□□ 0.51
HMGN3-201ENST00000275036 CHMP3Q9Y3E7 222 aa18.26■□□□□ 0.51
HMGN3-201ENST00000275036 UTYO14607 1347 aa18.25■□□□□ 0.51
HMGN3-201ENST00000275036 CELF2O95319 508 aaKnown RBP18.25■□□□□ 0.51
HMGN3-201ENST00000275036 KIF4BQ2VIQ3 1234 aa18.25■□□□□ 0.51
HMGN3-201ENST00000275036 USP48Q86UV5 1035 aa18.25■□□□□ 0.51
HMGN3-201ENST00000275036 MPHOSPH8Q99549 860 aa18.25■□□□□ 0.51
HMGN3-201ENST00000275036 TLL2Q9Y6L7 1015 aa18.25■□□□□ 0.51
HMGN3-201ENST00000275036 ZNF804BA4D1E1 1349 aa18.24■□□□□ 0.51
HMGN3-201ENST00000275036 CT47B1P0C2W7 299 aaPredicted RBP18.24■□□□□ 0.51
HMGN3-201ENST00000275036 ZNF280AP59817 542 aaPredicted RBP18.24■□□□□ 0.51
HMGN3-201ENST00000275036 IFIT5Q13325 482 aaKnown RBP18.24■□□□□ 0.51
HMGN3-201ENST00000275036 CDC37L1Q7L3B6 337 aa18.24■□□□□ 0.51
HMGN3-201ENST00000275036 PODNQ7Z5L7 613 aa18.24■□□□□ 0.51
HMGN3-201ENST00000275036 ZNF594Q96JF6 807 aaPredicted RBP18.24■□□□□ 0.51
HMGN3-201ENST00000275036 LEMD3Q9Y2U8 911 aa18.24■□□□□ 0.51
HMGN3-201ENST00000275036 WDR33Q9C0J8 1336 aaKnown RBP18.23■□□□□ 0.51
HMGN3-201ENST00000275036 USP17L3A6NCW0 530 aa18.23■□□□□ 0.51
HMGN3-201ENST00000275036 USP17L4A6NCW7 530 aa18.23■□□□□ 0.51
HMGN3-201ENST00000275036 ADM5C9JUS6 153 aa18.23■□□□□ 0.51
HMGN3-201ENST00000275036 FOXN1O15353 648 aa18.23■□□□□ 0.51
HMGN3-201ENST00000275036 TAF5LO75529 589 aa18.23■□□□□ 0.51
HMGN3-201ENST00000275036 DACT2Q5SW24 774 aa18.23■□□□□ 0.51
HMGN3-201ENST00000275036 CYP4F22Q6NT55 531 aa18.23■□□□□ 0.51
HMGN3-201ENST00000275036 USP17L1Q7RTZ2 530 aa18.23■□□□□ 0.51
HMGN3-201ENST00000275036 SAPCD2Q86UD0 394 aa18.23■□□□□ 0.51
HMGN3-201ENST00000275036 AGBL3Q8NEM8 1001 aa18.23■□□□□ 0.51
HMGN3-201ENST00000275036 HELBQ8NG08 1087 aaPredicted RBP18.23■□□□□ 0.51
HMGN3-201ENST00000275036 ZNF408Q9H9D4 720 aa18.23■□□□□ 0.51
HMGN3-201ENST00000275036 ANKRD2Q9GZV1 360 aa18.22■□□□□ 0.51
HMGN3-201ENST00000275036 COA1Q9GZY4 146 aa18.22■□□□□ 0.51
HMGN3-201ENST00000275036 RARSP54136 660 aaKnown RBP18.21■□□□□ 0.51
HMGN3-201ENST00000275036 BRPF1P55201 1214 aaPredicted RBP18.21■□□□□ 0.51
HMGN3-201ENST00000275036 CAPNS2Q96L46 248 aa18.21■□□□□ 0.51
HMGN3-201ENST00000275036 USP44Q9H0E7 712 aa18.21■□□□□ 0.51
HMGN3-201ENST00000275036 BICC1Q9H694 974 aaKnown RBP18.21■□□□□ 0.51
HMGN3-201ENST00000275036 WBP1LQ9NX94 342 aa18.21■□□□□ 0.51
HMGN3-201ENST00000275036 GGA3Q9NZ52 723 aa18.21■□□□□ 0.51
HMGN3-201ENST00000275036 NOB1Q9ULX3 412 aaKnown RBP18.21■□□□□ 0.51
HMGN3-201ENST00000275036 USP17L8P0C7I0 530 aa18.2■□□□□ 0.5
HMGN3-201ENST00000275036 CCDC57Q2TAC2 916 aa18.2■□□□□ 0.5
HMGN3-201ENST00000275036 KRT26Q7Z3Y9 468 aa18.2■□□□□ 0.5
HMGN3-201ENST00000275036 ANKRD44Q8N8A2 993 aa18.2■□□□□ 0.5
HMGN3-201ENST00000275036 HNRNPUQ00839 825 aaKnown RBP eCLIP18.19■□□□□ 0.5
HMGN3-201ENST00000275036 GRM1Q13255 1194 aa18.19■□□□□ 0.5
HMGN3-201ENST00000275036 SCARF1Q14162 830 aa18.19■□□□□ 0.5
HMGN3-201ENST00000275036 RABL6Q3YEC7 729 aaPredicted RBP18.19■□□□□ 0.5
HMGN3-201ENST00000275036 PAXIP1Q6ZW49 1069 aaPredicted RBP18.19■□□□□ 0.5
HMGN3-201ENST00000275036 POTEDQ86YR6 584 aa18.19■□□□□ 0.5
HMGN3-201ENST00000275036 PUS3Q9BZE2 481 aaKnown RBP18.19■□□□□ 0.5
HMGN3-201ENST00000275036 MYOZ2Q9NPC6 264 aa18.19■□□□□ 0.5
HMGN3-201ENST00000275036 AOC2O75106 756 aa18.18■□□□□ 0.5
HMGN3-201ENST00000275036 STRIP1Q5VSL9 837 aa18.18■□□□□ 0.5
HMGN3-201ENST00000275036 ANGEL2Q5VTE6 544 aaKnown RBP18.18■□□□□ 0.5
HMGN3-201ENST00000275036 LDHAL6AQ6ZMR3 332 aa18.18■□□□□ 0.5
HMGN3-201ENST00000275036 C15orf52Q6ZUT6 534 aaKnown RBP18.18■□□□□ 0.5
HMGN3-201ENST00000275036 FBXW7Q969H0 707 aa18.18■□□□□ 0.5
HMGN3-201ENST00000275036 DCPSQ96C86 337 aaKnown RBP18.18■□□□□ 0.5
HMGN3-201ENST00000275036 SCAF8Q9UPN6 1271 aaKnown RBP18.18■□□□□ 0.5
HMGN3-201ENST00000275036 KCNJ4P48050 445 aa18.17■□□□□ 0.5
HMGN3-201ENST00000275036 TAF7LQ5H9L4 462 aa18.17■□□□□ 0.5
HMGN3-201ENST00000275036 CD209Q9NNX6 404 aa18.17■□□□□ 0.5
HMGN3-201ENST00000275036 GTF2IP78347 998 aa18.16■□□□□ 0.5
HMGN3-201ENST00000275036 NBPF9Q3BBW0 867 aa18.16■□□□□ 0.5
HMGN3-201ENST00000275036 CERS5Q8N5B7 392 aa18.16■□□□□ 0.5
HMGN3-201ENST00000275036 CNNM1Q9NRU3 951 aa18.16■□□□□ 0.5
HMGN3-201ENST00000275036 PLIN1O60240 522 aa18.15■□□□□ 0.5
HMGN3-201ENST00000275036 TTLL5Q6EMB2 1281 aa18.15■□□□□ 0.5
HMGN3-201ENST00000275036 CDCA5Q96FF9 252 aa18.15■□□□□ 0.5
HMGN3-201ENST00000275036 HHIPL1Q96JK4 782 aa18.15■□□□□ 0.5
HMGN3-201ENST00000275036 ECE1P42892 770 aa18.14■□□□□ 0.49
HMGN3-201ENST00000275036 KIAA0825Q8IV33 1275 aa18.14■□□□□ 0.49
HMGN3-201ENST00000275036 SULF1Q8IWU6 871 aa18.14■□□□□ 0.49
HMGN3-201ENST00000275036 ZIC5Q96T25 663 aa18.14■□□□□ 0.49
HMGN3-201ENST00000275036 API5Q9BZZ5 524 aaKnown RBP18.14■□□□□ 0.49
HMGN3-201ENST00000275036 RIPOR2Q9Y4F9 1068 aa18.14■□□□□ 0.49
HMGN3-201ENST00000275036 MYO3BQ8WXR4 1341 aa18.14■□□□□ 0.49
HMGN3-201ENST00000275036 WNT10BO00744 389 aa18.13■□□□□ 0.49
HMGN3-201ENST00000275036 BCAR3O75815 825 aa18.13■□□□□ 0.49
HMGN3-201ENST00000275036 SASH1O94885 1247 aa18.13■□□□□ 0.49
HMGN3-201ENST00000275036 HSPA8P11142 646 aaKnown RBP18.13■□□□□ 0.49
HMGN3-201ENST00000275036 IL1R1P14778 569 aa18.13■□□□□ 0.49
HMGN3-201ENST00000275036 HUNKP57058 714 aa18.13■□□□□ 0.49
HMGN3-201ENST00000275036 LRRC24Q50LG9 513 aa18.13■□□□□ 0.49
HMGN3-201ENST00000275036 TNS4Q8IZW8 715 aa18.13■□□□□ 0.49
HMGN3-201ENST00000275036 KLHDC4Q8TBB5 520 aa18.13■□□□□ 0.49
HMGN3-201ENST00000275036 GBA2Q9HCG7 927 aaPredicted RBP18.13■□□□□ 0.49
HMGN3-201ENST00000275036 TNNQ9UQP3 1299 aa18.13■□□□□ 0.49
HMGN3-201ENST00000275036 JAG2Q9Y219 1238 aa18.13■□□□□ 0.49
HMGN3-201ENST00000275036 KIF16BQ96L93 1317 aa18.13■□□□□ 0.49
HMGN3-201ENST00000275036 LBX1P52954 281 aa18.12■□□□□ 0.49
HMGN3-201ENST00000275036 MAP2K1Q02750 393 aaPredicted RBP18.12■□□□□ 0.49
HMGN3-201ENST00000275036 AIDAQ96BJ3 306 aa18.12■□□□□ 0.49
HMGN3-201ENST00000275036 ZBED3Q96IU2 234 aaPredicted RBP18.12■□□□□ 0.49
HMGN3-201ENST00000275036 PCDHAC2Q9Y5I4 1007 aa18.12■□□□□ 0.49
HMGN3-201ENST00000275036 PITPNM2Q9BZ72 1349 aa18.12■□□□□ 0.49
HMGN3-201ENST00000275036 FAM155AB1AL88 458 aaPredicted RBP18.11■□□□□ 0.49
HMGN3-201ENST00000275036 RFX5P48382 616 aaPredicted RBP18.11■□□□□ 0.49
HMGN3-201ENST00000275036 CTCFP49711 727 aaPredicted RBP18.11■□□□□ 0.49
HMGN3-201ENST00000275036 ARHGAP45Q92619 1136 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms