RNA–Protein interactions for RNA: ENST00000263066.10

LDB3-201, Transcript of LIM domain binding 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDB3, Length 3,873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-201ENST00000263066 SCLT1Q96NL6 688 aa9.66□□□□□ -0.86
LDB3-201ENST00000263066 API5Q9BZZ5 524 aaKnown RBP9.66□□□□□ -0.86
LDB3-201ENST00000263066 USP16Q9Y5T5 823 aa9.66□□□□□ -0.86
LDB3-201ENST00000263066 EDC4Q6P2E9 1401 aaKnown RBP9.66□□□□□ -0.86
LDB3-201ENST00000263066 NEDD9Q14511 834 aa9.65□□□□□ -0.86
LDB3-201ENST00000263066 CWF19L2Q2TBE0 894 aaKnown RBP9.65□□□□□ -0.86
LDB3-201ENST00000263066 G2E3Q7L622 706 aa9.65□□□□□ -0.86
LDB3-201ENST00000263066 UBE3BQ7Z3V4 1068 aa9.65□□□□□ -0.86
LDB3-201ENST00000263066 IL17REQ8NFR9 667 aa9.65□□□□□ -0.86
LDB3-201ENST00000263066 CTCFLQ8NI51 663 aaPredicted RBP9.65□□□□□ -0.86
LDB3-201ENST00000263066 BIN2Q9UBW5 565 aaPredicted RBP9.65□□□□□ -0.86
LDB3-201ENST00000263066 TRMT112Q9UI30 125 aaKnown RBP9.65□□□□□ -0.86
LDB3-201ENST00000263066 CCNL1Q9UK58 526 aaPredicted RBP9.65□□□□□ -0.86
LDB3-201ENST00000263066 MRFAP1Q9Y605 127 aa9.65□□□□□ -0.86
LDB3-201ENST00000263066 TMCO5BA8MYB1 307 aa9.65□□□□□ -0.86
LDB3-201ENST00000263066 INPP5BP32019 993 aa9.65□□□□□ -0.86
LDB3-201ENST00000263066 NBPF11Q86T75 865 aa9.65□□□□□ -0.86
LDB3-201ENST00000263066 RPUSD2Q8IZ73 545 aaKnown RBP9.65□□□□□ -0.86
LDB3-201ENST00000263066 CARD6Q9BX69 1037 aa9.65□□□□□ -0.86
LDB3-201ENST00000263066 ODF2LQ9ULJ1 636 aa9.65□□□□□ -0.86
LDB3-201ENST00000263066 AGLP35573 1532 aa9.65□□□□□ -0.87
LDB3-201ENST00000263066 EZRP15311 586 aaKnown RBP9.65□□□□□ -0.87
LDB3-201ENST00000263066 TADA2BQ86TJ2 420 aa9.65□□□□□ -0.87
LDB3-201ENST00000263066 EFCAB13Q8IY85 973 aa9.65□□□□□ -0.87
LDB3-201ENST00000263066 DYDC1Q8WWB3 177 aa9.65□□□□□ -0.87
LDB3-201ENST00000263066 SRCIN1Q9C0H9 1055 aa9.65□□□□□ -0.87
LDB3-201ENST00000263066 KCNF1Q9H3M0 494 aa9.65□□□□□ -0.87
LDB3-201ENST00000263066 IQSEC3Q9UPP2 1182 aaPredicted RBP9.65□□□□□ -0.87
LDB3-201ENST00000263066 NKTRP30414 1462 aaKnown RBP9.64□□□□□ -0.87
LDB3-201ENST00000263066 RNMTO43148 476 aaKnown RBP9.64□□□□□ -0.87
LDB3-201ENST00000263066 ANO6Q4KMQ2 910 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 NAT10Q9H0A0 1025 aaKnown RBP9.64□□□□□ -0.87
LDB3-201ENST00000263066 G3BP2Q9UN86 482 aaKnown RBP9.64□□□□□ -0.87
LDB3-201ENST00000263066 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.64□□□□□ -0.87
LDB3-201ENST00000263066 USP6P35125 1406 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 A0A087WZG4 1122 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 CCDC69A6NI79 296 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 AKAP4Q5JQC9 854 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 CNNM1Q9NRU3 951 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 ZNF446Q9NWS9 450 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 MTMR7Q9Y216 660 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 MAP3K2Q9Y2U5 619 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 ERBB3P21860 1342 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 SFPQP23246 707 aaKnown RBP eCLIP9.64□□□□□ -0.87
LDB3-201ENST00000263066 UBE2HP62256 183 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 G3BP1Q13283 466 aaKnown RBP eCLIP9.64□□□□□ -0.87
LDB3-201ENST00000263066 BMP2KLQ5H9B9 411 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 TMX3Q96JJ7 454 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 LRRCC1Q9C099 1032 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 MKRN1Q9UHC7 482 aaKnown RBP9.64□□□□□ -0.87
LDB3-201ENST00000263066 TRPC5Q9UL62 973 aaPredicted RBP9.64□□□□□ -0.87
LDB3-201ENST00000263066 MYO6Q9UM54 1294 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 USP32Q8NFA0 1604 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 ARHGEF10O15013 1369 aa9.64□□□□□ -0.87
LDB3-201ENST00000263066 SRGAP3O43295 1099 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 FLIIQ13045 1269 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 NBPF9Q3BBW0 867 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 OTUD6BQ8N6M0 293 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 ERCC4Q92889 916 aaPredicted RBP9.63□□□□□ -0.87
LDB3-201ENST00000263066 LARP6Q9BRS8 491 aaKnown RBP9.63□□□□□ -0.87
LDB3-201ENST00000263066 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.63□□□□□ -0.87
LDB3-201ENST00000263066 JAG2Q9Y219 1238 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 CAPN7Q9Y6W3 813 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 SBNO2Q9Y2G9 1366 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 RGPD8O14715 1765 aaPredicted RBP9.63□□□□□ -0.87
LDB3-201ENST00000263066 A0A087WUV0 522 aaPredicted RBP9.63□□□□□ -0.87
LDB3-201ENST00000263066 RPSAP08865 295 aaKnown RBP9.63□□□□□ -0.87
LDB3-201ENST00000263066 TSHZ3Q63HK5 1081 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 ATF7IPQ6VMQ6 1270 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 KIAA1328Q86T90 577 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 FERMT3Q86UX7 667 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 PDILTQ8N807 584 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 EXOC4Q96A65 974 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.63□□□□□ -0.87
LDB3-201ENST00000263066 UTRNP46939 3433 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 RAD50Q92878 1312 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 PSDA5PKW4 1024 aaPredicted RBP9.63□□□□□ -0.87
LDB3-201ENST00000263066 TTC36A6NLP5 189 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 SETSIPP0DME0 302 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 MCM2P49736 904 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 EIF5P55010 431 aaKnown RBP9.63□□□□□ -0.87
LDB3-201ENST00000263066 GOPCQ9HD26 462 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 PARD3Q8TEW0 1356 aa9.63□□□□□ -0.87
LDB3-201ENST00000263066 NEMFO60524 1076 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 FBXW10Q5XX13 1052 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 SNRPA1P09661 255 aaKnown RBP9.62□□□□□ -0.87
LDB3-201ENST00000263066 PAX7P23759 505 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 TRDNQ13061 729 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 ZNF790Q6PG37 636 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 HELBQ8NG08 1087 aaPredicted RBP9.62□□□□□ -0.87
LDB3-201ENST00000263066 C1orf167Q5SNV9 1468 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 ANKRD26Q9UPS8 1709 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 UNC5CLQ8IV45 518 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 CACTINQ8WUQ7 758 aaKnown RBP9.62□□□□□ -0.87
LDB3-201ENST00000263066 KIF1BPQ96EK5 621 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 CEP89Q96ST8 783 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.62□□□□□ -0.87
LDB3-201ENST00000263066 SBNO1A3KN83 1393 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 NRKQ7Z2Y5 1582 aa9.62□□□□□ -0.87
LDB3-201ENST00000263066 PLA2G4AP47712 749 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms