RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 CCAR2Q8N163 923 aaKnown RBP14.53□□□□□ -0.08
NUP88-201ENST00000225696 NFATC2IPQ8NCF5 419 aa14.53□□□□□ -0.08
NUP88-201ENST00000225696 HAUS7Q99871 368 aa14.53□□□□□ -0.08
NUP88-201ENST00000225696 CAVIN2O95810 425 aa14.52□□□□□ -0.08
NUP88-201ENST00000225696 FDPSP14324 419 aaKnown RBP14.52□□□□□ -0.08
NUP88-201ENST00000225696 EXOSC10Q01780 885 aaKnown RBP14.52□□□□□ -0.08
NUP88-201ENST00000225696 FAM160A1Q05DH4 1040 aa14.52□□□□□ -0.08
NUP88-201ENST00000225696 NEXNQ0ZGT2 675 aa14.52□□□□□ -0.08
NUP88-201ENST00000225696 ELF2Q15723 593 aa14.52□□□□□ -0.08
NUP88-201ENST00000225696 TTLL5Q6EMB2 1281 aa14.52□□□□□ -0.08
NUP88-201ENST00000225696 NAA16Q6N069 864 aaPredicted RBP14.52□□□□□ -0.08
NUP88-201ENST00000225696 ZNF496Q96IT1 587 aaPredicted RBP14.52□□□□□ -0.08
NUP88-201ENST00000225696 GJB4Q9NTQ9 266 aa14.52□□□□□ -0.08
NUP88-201ENST00000225696 CGNQ9P2M7 1197 aaKnown RBP14.52□□□□□ -0.08
NUP88-201ENST00000225696 PCDHA7Q9UN72 937 aa14.52□□□□□ -0.08
NUP88-201ENST00000225696 SALL1Q9NSC2 1324 aa14.52□□□□□ -0.09
NUP88-201ENST00000225696 NCAPD2Q15021 1401 aa14.52□□□□□ -0.09
NUP88-201ENST00000225696 GOLIM4O00461 696 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 KINO60870 393 aaKnown RBP14.51□□□□□ -0.09
NUP88-201ENST00000225696 DPCR1Q3MIW9 517 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 FBXO38Q6PIJ6 1188 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 CCDC73Q6ZRK6 1079 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 ANKLE2Q86XL3 938 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 FMR1NBQ8N0W7 255 aaPredicted RBP14.51□□□□□ -0.09
NUP88-201ENST00000225696 KCNH5Q8NCM2 988 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 ST7Q9NRC1 585 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 MORC2Q9Y6X9 1032 aaPredicted RBP14.51□□□□□ -0.09
NUP88-201ENST00000225696 LAMA4Q16363 1823 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 SLFN14P0C7P3 912 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 PDIA3P30101 505 aaKnown RBP14.51□□□□□ -0.09
NUP88-201ENST00000225696 NDUFA8P51970 172 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 TIMM10P62072 90 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 ANKRD13DQ6ZTN6 518 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 ORAI2Q96SN7 254 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 LLPHQ9BRT6 129 aaKnown RBP14.51□□□□□ -0.09
NUP88-201ENST00000225696 NEDD4P46934 1319 aa14.51□□□□□ -0.09
NUP88-201ENST00000225696 E7EWF7 191 aa14.5□□□□□ -0.09
NUP88-201ENST00000225696 E4F1Q66K89 784 aaPredicted RBP14.5□□□□□ -0.09
NUP88-201ENST00000225696 KBTBD3Q8NAB2 608 aa14.5□□□□□ -0.09
NUP88-201ENST00000225696 C5P01031 1676 aa14.5□□□□□ -0.09
NUP88-201ENST00000225696 CTAGE5O15320 804 aa14.5□□□□□ -0.09
NUP88-201ENST00000225696 ANO10Q9NW15 660 aa14.5□□□□□ -0.09
NUP88-201ENST00000225696 ZNF446Q9NWS9 450 aa14.5□□□□□ -0.09
NUP88-201ENST00000225696 CLIC4Q9Y696 253 aa14.5□□□□□ -0.09
NUP88-201ENST00000225696 MYH15Q9Y2K3 1946 aa14.49□□□□□ -0.09
NUP88-201ENST00000225696 SIPA1L3O60292 1781 aaPredicted RBP14.49□□□□□ -0.09
NUP88-201ENST00000225696 BIN1O00499 593 aa14.49□□□□□ -0.09
NUP88-201ENST00000225696 POLR3DP05423 398 aaPredicted RBP14.49□□□□□ -0.09
NUP88-201ENST00000225696 RABL6Q3YEC7 729 aaPredicted RBP14.49□□□□□ -0.09
NUP88-201ENST00000225696 ARMCX5Q6P1M9 558 aa14.49□□□□□ -0.09
NUP88-201ENST00000225696 ZNF771Q7L3S4 317 aaPredicted RBP14.49□□□□□ -0.09
NUP88-201ENST00000225696 RAB11FIP4Q86YS3 637 aa14.49□□□□□ -0.09
NUP88-201ENST00000225696 NEUROD6Q96NK8 337 aa14.49□□□□□ -0.09
NUP88-201ENST00000225696 FMNL2Q96PY5 1086 aa14.49□□□□□ -0.09
NUP88-201ENST00000225696 AGXT2Q9BYV1 514 aa14.49□□□□□ -0.09
NUP88-201ENST00000225696 A0A087WZG4 1122 aa14.49□□□□□ -0.09
NUP88-201ENST00000225696 HSPD1P10809 573 aaKnown RBP14.49□□□□□ -0.09
NUP88-201ENST00000225696 LMBR1LQ6UX01 489 aa14.49□□□□□ -0.09
NUP88-201ENST00000225696 CEP57L1Q8IYX8 460 aa14.49□□□□□ -0.09
NUP88-201ENST00000225696 SDF4Q9BRK5 362 aa14.49□□□□□ -0.09
NUP88-201ENST00000225696 XPO4Q9C0E2 1151 aaKnown RBP14.49□□□□□ -0.09
NUP88-201ENST00000225696 CARMIL3Q8ND23 1372 aa14.48□□□□□ -0.09
NUP88-201ENST00000225696 NEMFO60524 1076 aa14.48□□□□□ -0.09
NUP88-201ENST00000225696 ISM2Q6H9L7 571 aa14.48□□□□□ -0.09
NUP88-201ENST00000225696 SLC52A2Q9HAB3 445 aa14.48□□□□□ -0.09
NUP88-201ENST00000225696 KDM6AO15550 1401 aaPredicted RBP14.48□□□□□ -0.09
NUP88-201ENST00000225696 PALLDQ8WX93 1383 aa14.48□□□□□ -0.09
NUP88-201ENST00000225696 SH3TC1Q8TE82 1336 aa14.47□□□□□ -0.09
NUP88-201ENST00000225696 CASP7P55210 303 aa14.47□□□□□ -0.09
NUP88-201ENST00000225696 ATG9AQ7Z3C6 839 aa14.47□□□□□ -0.09
NUP88-201ENST00000225696 ZNF397Q8NF99 534 aaPredicted RBP14.47□□□□□ -0.09
NUP88-201ENST00000225696 PAG1Q9NWQ8 432 aa14.47□□□□□ -0.09
NUP88-201ENST00000225696 IFNKQ9P0W0 207 aa14.47□□□□□ -0.09
NUP88-201ENST00000225696 OVOS2A0A0G2JMS6 1433 aa14.47□□□□□ -0.09
NUP88-201ENST00000225696 PTPN21Q16825 1174 aa14.47□□□□□ -0.09
NUP88-201ENST00000225696 LINC00301Q8NCQ3 95 aa14.47□□□□□ -0.09
NUP88-201ENST00000225696 MRPS27Q92552 414 aaKnown RBP14.47□□□□□ -0.09
NUP88-201ENST00000225696 ZNF396Q96N95 335 aaPredicted RBP14.47□□□□□ -0.09
NUP88-201ENST00000225696 MAST3O60307 1309 aa14.46□□□□□ -0.09
NUP88-201ENST00000225696 M0R2C6 588 aa14.46□□□□□ -0.09
NUP88-201ENST00000225696 HMGB1P09429 215 aaKnown RBP14.46□□□□□ -0.09
NUP88-201ENST00000225696 HAND2P61296 217 aa14.46□□□□□ -0.09
NUP88-201ENST00000225696 ERCC6LQ2NKX8 1250 aa14.46□□□□□ -0.09
NUP88-201ENST00000225696 TMC6Q7Z403 805 aa14.46□□□□□ -0.09
NUP88-201ENST00000225696 PPP1R13BQ96KQ4 1090 aa14.46□□□□□ -0.09
NUP88-201ENST00000225696 OSBPL5Q9H0X9 879 aaPredicted RBP14.46□□□□□ -0.09
NUP88-201ENST00000225696 KIAA1468Q9P260 1216 aa14.46□□□□□ -0.09
NUP88-201ENST00000225696 FOXP2O15409 715 aa14.46□□□□□ -0.1
NUP88-201ENST00000225696 SMC2O95347 1197 aa14.46□□□□□ -0.1
NUP88-201ENST00000225696 ZC3H6P61129 1189 aaKnown RBP14.46□□□□□ -0.1
NUP88-201ENST00000225696 ZMYM1Q5SVZ6 1142 aa14.46□□□□□ -0.1
NUP88-201ENST00000225696 ADALQ6DHV7 355 aa14.46□□□□□ -0.1
NUP88-201ENST00000225696 SYT10Q6XYQ8 523 aa14.46□□□□□ -0.1
NUP88-201ENST00000225696 ZNF594Q96JF6 807 aaPredicted RBP14.46□□□□□ -0.1
NUP88-201ENST00000225696 FAM53CQ9NYF3 392 aa14.46□□□□□ -0.1
NUP88-201ENST00000225696 RTEL1Q9NZ71 1219 aa14.46□□□□□ -0.1
NUP88-201ENST00000225696 KIF28PB7ZC32 967 aa14.45□□□□□ -0.1
NUP88-201ENST00000225696 FANCGO15287 622 aa14.45□□□□□ -0.1
NUP88-201ENST00000225696 SLU7O95391 586 aaKnown RBP14.45□□□□□ -0.1
NUP88-201ENST00000225696 ATP1A3P13637 1013 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms