RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 TTF1Q15361 905 aaPredicted RBP17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 CCDC102BQ68D86 513 aa17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 AKAP11Q9UKA4 1901 aa17.12■□□□□ 0.33
RTFDC1-201ENST00000023939 ADRA2BP18089 450 aa17.12■□□□□ 0.33
RTFDC1-201ENST00000023939 CCDC129Q6ZRS4 1044 aa17.12■□□□□ 0.33
RTFDC1-201ENST00000023939 FAM196AQ6ZSG2 479 aa17.12■□□□□ 0.33
RTFDC1-201ENST00000023939 ARHGEF1Q92888 912 aaKnown RBP17.12■□□□□ 0.33
RTFDC1-201ENST00000023939 SETDB2Q96T68 719 aa17.12■□□□□ 0.33
RTFDC1-201ENST00000023939 SH2B1Q9NRF2 756 aaPredicted RBP17.12■□□□□ 0.33
RTFDC1-201ENST00000023939 ANKRD1Q15327 319 aa17.11■□□□□ 0.33
RTFDC1-201ENST00000023939 ZSCAN25Q6NSZ9 544 aa17.11■□□□□ 0.33
RTFDC1-201ENST00000023939 RPS6KB1P23443 525 aa17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 GSE1Q14687 1217 aa17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 BLOC1S2Q6QNY1 142 aa17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 APPBP2Q92624 585 aa17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 SRP68Q9UHB9 627 aaKnown RBP17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 HMGB2P26583 209 aaKnown RBP17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 DEKP35659 375 aaKnown RBP17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 PHKA1P46020 1223 aa17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 SLC27A3Q5K4L6 730 aa17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 ILDR2Q71H61 639 aa17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 OSBP2Q969R2 916 aa17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 ZDHHC9Q9Y397 364 aa17.1■□□□□ 0.33
RTFDC1-201ENST00000023939 HSPD1P10809 573 aaKnown RBP17.09■□□□□ 0.33
RTFDC1-201ENST00000023939 CPA1P15085 419 aa17.09■□□□□ 0.33
RTFDC1-201ENST00000023939 TRAPPC3LQ5T215 181 aa17.09■□□□□ 0.33
RTFDC1-201ENST00000023939 TPTE2Q6XPS3 522 aa17.09■□□□□ 0.33
RTFDC1-201ENST00000023939 NOL8Q76FK4 1167 aaKnown RBP17.09■□□□□ 0.33
RTFDC1-201ENST00000023939 ANKRD18AQ8IVF6 992 aa17.09■□□□□ 0.33
RTFDC1-201ENST00000023939 HELBQ8NG08 1087 aaPredicted RBP17.09■□□□□ 0.33
RTFDC1-201ENST00000023939 BSDC1Q9NW68 430 aaPredicted RBP17.09■□□□□ 0.33
RTFDC1-201ENST00000023939 C4AP0C0L4 1744 aa17.08■□□□□ 0.33
RTFDC1-201ENST00000023939 M0R2C6 588 aa17.08■□□□□ 0.32
RTFDC1-201ENST00000023939 BAG4O95429 457 aaKnown RBP17.08■□□□□ 0.32
RTFDC1-201ENST00000023939 CYP21A2P08686 494 aa17.08■□□□□ 0.32
RTFDC1-201ENST00000023939 CHRNDQ07001 517 aa17.08■□□□□ 0.32
RTFDC1-201ENST00000023939 UBE3CQ15386 1083 aa17.08■□□□□ 0.32
RTFDC1-201ENST00000023939 C3orf67Q6ZVT6 689 aa17.08■□□□□ 0.32
RTFDC1-201ENST00000023939 KRT27Q7Z3Y8 459 aa17.08■□□□□ 0.32
RTFDC1-201ENST00000023939 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.08■□□□□ 0.32
RTFDC1-201ENST00000023939 TAF6LQ9Y6J9 622 aa17.08■□□□□ 0.32
RTFDC1-201ENST00000023939 BRD1O95696 1058 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 HMGB1P09429 215 aaKnown RBP17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 ADD2P35612 726 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 PKP1Q13835 747 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 SLFNL1Q499Z3 407 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 PI16Q6UXB8 463 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 AMIGO3Q86WK7 504 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 NBPF5PQ86XG9 351 aaPredicted RBP17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 NEK1Q96PY6 1258 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 LRRC4BQ9NT99 713 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 GTF2E1P29083 439 aaPredicted RBP17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 RFC4P35249 363 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 BICDL1Q6ZP65 573 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 SMIM5Q71RC9 77 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 NLRP3Q96P20 1036 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 PIH1D3Q9NQM4 214 aaKnown RBP17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 CTNNA3Q9UI47 895 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 MYH7P12883 1935 aa17.07■□□□□ 0.32
RTFDC1-201ENST00000023939 GOLGA6L22H0YM25 854 aa17.06■□□□□ 0.32
RTFDC1-201ENST00000023939 TRAK2O60296 914 aa17.06■□□□□ 0.32
RTFDC1-201ENST00000023939 UBE4AQ14139 1066 aa17.06■□□□□ 0.32
RTFDC1-201ENST00000023939 SKOR2Q2VWA4 1001 aaPredicted RBP17.06■□□□□ 0.32
RTFDC1-201ENST00000023939 SPATA5Q8NB90 893 aa17.06■□□□□ 0.32
RTFDC1-201ENST00000023939 COL4A1P02462 1669 aa17.06■□□□□ 0.32
RTFDC1-201ENST00000023939 CARMIL3Q8ND23 1372 aa17.05■□□□□ 0.32
RTFDC1-201ENST00000023939 WASHC4Q2M389 1173 aa17.05■□□□□ 0.32
RTFDC1-201ENST00000023939 ZNF804BA4D1E1 1349 aa17.05■□□□□ 0.32
RTFDC1-201ENST00000023939 CASZ1Q86V15 1759 aa17.05■□□□□ 0.32
RTFDC1-201ENST00000023939 RASGRF1Q13972 1273 aa17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 TPCN1Q9ULQ1 816 aa17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 A0A1B0GUL6 1792 aa17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 BRWD3Q6RI45 1802 aa17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 ZBTB22O15209 634 aa17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 FOXP2O15409 715 aa17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 LARGE1O95461 756 aa17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 TOB2Q14106 344 aaPredicted RBP17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 ME3Q16798 604 aa17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 SLC9C2Q5TAH2 1124 aa17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 PUS7LQ9H0K6 701 aaKnown RBP17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 MINPP1Q9UNW1 487 aa17.04■□□□□ 0.32
RTFDC1-201ENST00000023939 DOCK2Q92608 1830 aa17.03■□□□□ 0.32
RTFDC1-201ENST00000023939 TCRBV5S4A2TA0A5A2 114 aa17.03■□□□□ 0.32
RTFDC1-201ENST00000023939 PDIA4P13667 645 aaKnown RBP17.03■□□□□ 0.32
RTFDC1-201ENST00000023939 PDE6AP16499 860 aa17.03■□□□□ 0.32
RTFDC1-201ENST00000023939 RPS8P62241 208 aaKnown RBP17.03■□□□□ 0.32
RTFDC1-201ENST00000023939 COL9A3Q14050 684 aaPredicted RBP17.03■□□□□ 0.32
RTFDC1-201ENST00000023939 ZNF772Q68DY9 489 aaPredicted RBP17.03■□□□□ 0.32
RTFDC1-201ENST00000023939 STOX1Q6ZVD7 989 aa17.03■□□□□ 0.32
RTFDC1-201ENST00000023939 UBR3Q6ZT12 1888 aa17.03■□□□□ 0.32
RTFDC1-201ENST00000023939 WDR33Q9C0J8 1336 aaKnown RBP17.03■□□□□ 0.32
RTFDC1-201ENST00000023939 GPAA1O43292 621 aa17.02■□□□□ 0.32
RTFDC1-201ENST00000023939 RBM6P78332 1123 aaKnown RBP17.02■□□□□ 0.32
RTFDC1-201ENST00000023939 ST3GAL1Q11201 340 aa17.02■□□□□ 0.32
RTFDC1-201ENST00000023939 NFIXQ14938 502 aa17.02■□□□□ 0.32
RTFDC1-201ENST00000023939 DHX32Q7L7V1 743 aaKnown RBP17.02■□□□□ 0.32
RTFDC1-201ENST00000023939 FBXL16Q8N461 479 aa17.02■□□□□ 0.32
RTFDC1-201ENST00000023939 CELF1Q92879 486 aaKnown RBP17.02■□□□□ 0.32
RTFDC1-201ENST00000023939 SMC3Q9UQE7 1217 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms