RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 PLXNB1O43157 2135 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 A0A1W2PRQ8 180 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 TVP23AA6NH52 213 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 ANKRD30BLA7E2S9 258 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 H3BUX3 64 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 ACOT8O14734 319 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 OPN1MWP04001 364 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 OPN1MW2P0DN77 364 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 OPN1MW3P0DN78 364 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 VSIG10L2P0DP72 767 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 SELLP14151 372 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 GRK5P34947 590 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 SAA4P35542 130 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 SLC7A2P52569 658 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 CSNK2BP67870 215 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 DGCR6Q14129 220 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 KRT72Q14CN4 511 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 NSUN5P1Q3KNT7 163 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 SLC35F1Q5T1Q4 408 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 SAMD5Q5TGI4 173 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 TEX36Q5VZQ5 186 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 SLC36A1Q7Z2H8 476 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 DPY19L4Q7Z388 723 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 ARPINQ7Z6K5 226 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 KLHDC1Q8N7A1 406 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 SPERTQ8NA61 448 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 PROKR2Q8NFJ6 384 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 OR5T2Q8NGG2 359 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 OR5R1Q8NH85 324 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 SNTG1Q9NSN8 517 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 CENPMQ9NSP4 180 aa12.31□□□□□ -0.44
SYNE2-228ENST00000639659 MRPL22Q9NWU5 206 aaKnown RBP12.31□□□□□ -0.44
SYNE2-228ENST00000639659 A0A1W2PQ09 198 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 OR6C68A6NDL8 312 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 HMGB1P1B2RPK0 211 aaPredicted RBP12.3□□□□□ -0.44
SYNE2-228ENST00000639659 PTBP3O95758 552 aaKnown RBP12.3□□□□□ -0.44
SYNE2-228ENST00000639659 TFF1P04155 84 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 POU1F1P28069 291 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 GFOD2Q3B7J2 385 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 LYPD4Q6UWN0 246 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 SLC15A3Q8IY34 581 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 OR4C13Q8NGP0 309 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 NPRL2Q8WTW4 380 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 SGCDQ92629 289 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 CLPTM1LQ96KA5 538 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 KCTD14Q9BQ13 255 aaPredicted RBP12.3□□□□□ -0.44
SYNE2-228ENST00000639659 MRGBPQ9NV56 204 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 KAAG1Q9UBP8 84 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 AP3M1Q9Y2T2 418 aa12.3□□□□□ -0.44
SYNE2-228ENST00000639659 NKX6-3A6NJ46 265 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 NME4O00746 187 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 SPARCP09486 303 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 MUC1P15941 1255 aaPredicted RBP12.29□□□□□ -0.44
SYNE2-228ENST00000639659 RHCEP18577 417 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 GSK3BP49841 420 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 SPIBQ01892 262 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.29□□□□□ -0.44
SYNE2-228ENST00000639659 OXLD1Q5BKU9 147 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 LRRC10Q5BKY1 277 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 DRAM2Q6UX65 266 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 REC114Q7Z4M0 266 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 DCXRQ7Z4W1 244 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 WDR86Q86TI4 376 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 ZBTB46Q86UZ6 589 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 Q8N7P7 452 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 CYB561A3Q8NBI2 242 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 LY6G5BQ8NDX9 201 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 OR51L1Q8NGJ5 315 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 OR4C15Q8NGM1 316 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 RORBQ92753 470 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 NKX3-1Q99801 234 aaPredicted RBP12.29□□□□□ -0.44
SYNE2-228ENST00000639659 FGFR1OP2Q9NVK5 253 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 NDUFAF4Q9P032 175 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 FBLN5Q9UBX5 448 aa12.29□□□□□ -0.44
SYNE2-228ENST00000639659 PRPF19Q9UMS4 504 aaKnown RBP12.29□□□□□ -0.44
SYNE2-228ENST00000639659 GPR37O15354 613 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 LHBP01229 141 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 ANXA2P07355 339 aaKnown RBP12.28□□□□□ -0.44
SYNE2-228ENST00000639659 NDUFB7P17568 137 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 PAX6P26367 422 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 TIGD6Q17RP2 521 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 KPRPQ5T749 579 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-228ENST00000639659 METAP1DQ6UB28 335 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-228ENST00000639659 OR1M1Q8NGA1 313 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 OR51G2Q8NGK0 314 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 OR2T6Q8NHC8 308 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 PPP1R35Q8TAP8 253 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 C17orf50Q8WW18 174 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 SSX3Q99909 188 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 DCTN5Q9BTE1 182 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 PAPOLGQ9BWT3 736 aaKnown RBP12.28□□□□□ -0.44
SYNE2-228ENST00000639659 KCNG2Q9UJ96 466 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 ZNF391Q9UJN7 358 aa12.28□□□□□ -0.44
SYNE2-228ENST00000639659 CDIPTO14735 213 aa12.27□□□□□ -0.45
SYNE2-228ENST00000639659 ARPC3O15145 178 aa12.27□□□□□ -0.45
SYNE2-228ENST00000639659 XRCC2O43543 280 aa12.27□□□□□ -0.45
SYNE2-228ENST00000639659 ANGPTL7O43827 346 aa12.27□□□□□ -0.45
SYNE2-228ENST00000639659 PSKH1P11801 424 aa12.27□□□□□ -0.45
SYNE2-228ENST00000639659 GNALP38405 381 aa12.27□□□□□ -0.45
SYNE2-228ENST00000639659 NAA10P41227 235 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms